Wall clock time and date at job start Tue Mar 31 2020 16:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47637 * 2 1 4 4 N 1.46495 * 109.47379 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99912 * 270.00030 * 4 3 2 6 6 H 1.08001 * 120.00427 * 135.19948 * 5 4 3 7 7 C 1.38952 * 119.99719 * 315.19724 * 5 4 3 8 8 N 1.31408 * 119.99769 * 2.62862 * 7 5 4 9 9 Si 1.86794 * 119.99827 * 182.63234 * 7 5 4 10 10 H 1.48501 * 109.47332 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47235 * 120.00022 * 9 7 5 12 12 H 1.48499 * 109.47309 * 239.99931 * 9 7 5 13 13 C 1.34774 * 120.00465 * 89.99596 * 4 3 2 14 14 O 1.21292 * 119.99750 * 4.89396 * 13 4 3 15 15 C 1.50705 * 120.00284 * 184.89360 * 13 4 3 16 16 C 1.53008 * 109.46950 * 174.58131 * 15 13 4 17 17 H 1.08993 * 109.47209 * 55.00172 * 16 15 13 18 18 N 1.46496 * 109.46878 * 294.99989 * 16 15 13 19 19 C 1.34771 * 119.99801 * 158.35560 * 18 16 15 20 20 C 1.50708 * 120.00230 * 174.76243 * 19 18 16 21 21 O 1.21285 * 120.00122 * 354.48702 * 19 18 16 22 22 C 1.50703 * 109.46768 * 174.99751 * 16 15 13 23 23 C 1.38238 * 119.99650 * 82.38830 * 22 16 15 24 24 C 1.38238 * 119.99779 * 179.76622 * 23 22 16 25 25 C 1.38234 * 119.99984 * 0.50387 * 24 23 22 26 26 C 1.50693 * 120.00100 * 179.72851 * 25 24 23 27 27 C 1.38237 * 119.99534 * 359.74879 * 25 24 23 28 28 C 1.38229 * 119.99976 * 262.66066 * 22 16 15 29 29 H 1.08998 * 109.46745 * 300.00462 * 1 2 3 30 30 H 1.09003 * 109.46678 * 59.99842 * 1 2 3 31 31 H 1.08993 * 109.47567 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47102 * 239.99717 * 2 1 3 33 33 H 1.09001 * 109.47188 * 120.00260 * 2 1 3 34 34 H 1.08990 * 109.47076 * 59.99876 * 3 2 1 35 35 H 1.09003 * 109.46718 * 299.99648 * 3 2 1 36 36 H 0.97003 * 119.99619 * 185.00506 * 8 7 5 37 37 H 1.08992 * 109.47211 * 54.58312 * 15 13 4 38 38 H 1.08994 * 109.46949 * 294.58095 * 15 13 4 39 39 H 0.97000 * 120.00546 * 338.34335 * 18 16 15 40 40 H 1.08999 * 109.46852 * 179.72206 * 20 19 18 41 41 H 1.09003 * 109.46981 * 299.72301 * 20 19 18 42 42 H 1.09001 * 109.46739 * 59.72227 * 20 19 18 43 43 H 1.07995 * 120.00061 * 359.97438 * 23 22 16 44 44 H 1.08003 * 120.00098 * 180.22966 * 24 23 22 45 45 H 1.09010 * 109.46981 * 270.02123 * 26 25 24 46 46 H 1.08997 * 109.47277 * 30.02042 * 26 25 24 47 47 H 1.08999 * 109.47410 * 150.02657 * 26 25 24 48 48 H 1.08008 * 119.99417 * 179.97438 * 27 25 24 49 49 H 1.07994 * 120.00164 * 0.02562 * 28 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1910 1.4422 1.1864 6 1 5.0358 0.7831 1.3219 7 6 3.7994 2.2900 2.2153 8 7 2.7406 3.0545 2.0695 9 14 4.7781 2.3431 3.8054 10 1 5.9162 1.3932 3.7182 11 1 5.2956 3.7179 4.0225 12 1 3.9001 1.9598 4.9401 13 6 4.1785 1.4424 -1.1680 14 8 3.5750 1.5322 -2.2163 15 6 5.6815 1.3310 -1.1710 16 6 6.1817 1.2190 -2.6126 17 1 5.8072 2.0617 -3.1937 18 7 5.6991 -0.0328 -3.2010 19 6 5.6254 -0.1635 -4.5404 20 6 5.2423 -1.4882 -5.1484 21 8 5.8626 0.7864 -5.2563 22 6 7.6886 1.2313 -2.6238 23 6 8.3911 0.0669 -2.3753 24 6 9.7734 0.0771 -2.3903 25 6 10.4532 1.2538 -2.6435 26 6 11.9600 1.2662 -2.6537 27 6 9.7506 2.4192 -2.8867 28 6 8.3683 2.4080 -2.8769 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6768 1.9562 -0.8901 36 1 2.5089 3.6984 2.7571 37 1 5.9812 0.4444 -0.6125 38 1 6.1123 2.2170 -0.7047 39 1 5.4327 -0.7677 -2.6267 40 1 5.2312 -1.3996 -6.2347 41 1 5.9673 -2.2467 -4.8530 42 1 4.2515 -1.7761 -4.7971 43 1 7.8600 -0.8514 -2.1728 44 1 10.3222 -0.8334 -2.1998 45 1 12.3285 1.4822 -1.6508 46 1 12.3292 0.2921 -2.9745 47 1 12.3124 2.0334 -3.3432 48 1 10.2818 3.3387 -3.0841 49 1 7.8195 3.3186 -3.0662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056484643.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:31 Heat of formation + Delta-G solvation = -64.994923 kcal Electronic energy + Delta-G solvation = -29314.462419 eV Core-core repulsion = 25433.760777 eV Total energy + Delta-G solvation = -3880.701641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.03737 -38.70755 -38.43662 -35.63650 -34.72103 -32.82262 -32.52798 -31.34547 -30.78139 -30.61772 -28.78073 -27.04394 -25.73317 -24.47658 -22.82805 -22.55235 -20.85843 -20.49735 -19.90292 -19.13897 -17.22970 -16.48819 -16.35150 -16.04330 -15.50901 -15.05292 -14.75870 -14.62607 -14.51007 -14.28301 -13.92348 -13.84103 -13.74559 -13.28501 -13.13975 -13.00415 -12.65429 -12.59546 -12.40336 -12.21966 -12.01336 -11.90628 -11.74841 -11.47661 -11.27685 -11.13759 -11.06463 -11.01909 -10.88202 -10.74709 -10.68248 -10.30837 -10.23774 -9.70678 -9.52529 -9.11553 -8.80597 -8.72819 -8.50412 -8.25759 -7.45028 -6.32598 -4.22755 1.45841 1.56514 3.03270 3.07320 3.17146 3.19382 3.56527 3.86401 3.92346 4.08474 4.66196 4.90397 4.91290 4.93851 5.06906 5.14179 5.22416 5.31755 5.38250 5.48212 5.52379 5.53003 5.62580 5.74587 5.79295 5.80591 5.81681 5.84655 5.92994 6.02575 6.15799 6.18339 6.28278 6.39834 6.42935 6.52819 6.56039 6.61146 6.68936 6.71998 6.74117 6.83884 6.98286 7.15419 7.18073 7.29851 7.66813 7.88606 8.04165 8.37911 8.61839 9.03806 9.48417 9.92278 10.62790 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.004250 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.080597 B = 6586.767510 C = 8755.177575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.100 3.900 4 N -0.443 5.443 5 C -0.335 4.335 6 H 0.086 0.914 7 C 0.047 3.953 8 N -0.869 5.869 9 Si 0.916 3.084 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.474 3.526 14 O -0.594 6.594 15 C -0.123 4.123 16 C 0.201 3.799 17 H 0.101 0.899 18 N -0.707 5.707 19 C 0.516 3.484 20 C -0.173 4.173 21 O -0.549 6.549 22 C -0.086 4.086 23 C -0.102 4.102 24 C -0.123 4.123 25 C -0.096 4.096 26 C -0.111 4.111 27 C -0.120 4.120 28 C -0.099 4.099 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.125 0.875 35 H 0.048 0.952 36 H 0.270 0.730 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.397 0.603 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.119 0.881 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.174 -7.525 -4.724 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C -0.023 4.023 4 N -0.161 5.161 5 C -0.463 4.463 6 H 0.103 0.897 7 C -0.158 4.158 8 N -0.507 5.507 9 Si 0.742 3.258 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.262 3.738 14 O -0.479 6.479 15 C -0.163 4.163 16 C 0.095 3.905 17 H 0.118 0.882 18 N -0.357 5.357 19 C 0.303 3.697 20 C -0.233 4.233 21 O -0.427 6.427 22 C -0.088 4.088 23 C -0.121 4.121 24 C -0.142 4.142 25 C -0.096 4.096 26 C -0.168 4.168 27 C -0.138 4.138 28 C -0.118 4.118 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.231 0.769 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.137 0.863 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.882 -6.700 -5.588 13.182 hybrid contribution 0.268 -0.304 1.368 1.427 sum 10.151 -7.004 -4.220 13.034 Atomic orbital electron populations 1.21647 0.96735 1.00222 1.01429 1.21805 0.94622 0.99787 1.00620 1.21799 0.81627 0.94382 1.04496 1.43415 1.04788 1.63659 1.04255 1.19455 1.13963 1.22022 0.90867 0.89652 1.25510 0.95724 0.94897 0.99644 1.69555 1.23684 1.21951 1.35517 0.86047 0.79745 0.78423 0.81595 1.19211 1.20499 1.20656 1.20337 0.88856 0.80301 0.84311 1.90578 1.70221 1.55248 1.31851 1.21684 0.95623 1.04683 0.94309 1.19585 0.87688 0.88652 0.94550 0.88157 1.45812 1.66435 1.16843 1.06642 1.20583 0.76443 0.90413 0.82282 1.21898 1.03338 0.95236 1.02805 1.90679 1.49964 1.41164 1.60887 1.20299 0.95865 0.93758 0.98855 1.20884 0.93768 0.97817 0.99581 1.20937 0.94178 0.97438 1.01599 1.19857 0.95772 0.93654 1.00322 1.20753 0.91585 1.02359 1.02085 1.20959 0.93994 0.97559 1.01317 1.21013 0.94104 0.97868 0.98815 0.92874 0.93280 0.93851 0.93747 0.92508 0.85743 0.93321 0.91936 0.89783 0.88028 0.76937 0.89435 0.89882 0.89538 0.86406 0.86497 0.91395 0.91870 0.91807 0.86306 0.85899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.13 -2.60 6.26 -26.73 -0.17 -2.77 16 3 C 0.10 2.36 5.05 -4.05 -0.02 2.34 16 4 N -0.44 -10.61 2.53 -114.82 -0.29 -10.90 16 5 C -0.33 -8.02 8.56 -14.93 -0.13 -8.15 16 6 H 0.09 1.94 7.11 -52.49 -0.37 1.56 16 7 C 0.05 1.14 5.38 -17.47 -0.09 1.05 16 8 N -0.87 -22.26 10.72 55.50 0.60 -21.66 16 9 Si 0.92 18.81 29.56 -169.99 -5.02 13.78 16 10 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.47 10.80 7.45 -10.98 -0.08 10.72 16 14 O -0.59 -14.96 15.00 5.55 0.08 -14.88 16 15 C -0.12 -2.27 3.98 -27.88 -0.11 -2.38 16 16 C 0.20 3.48 1.74 -69.08 -0.12 3.36 16 17 H 0.10 2.07 7.23 -51.93 -0.38 1.70 16 18 N -0.71 -11.15 3.54 -54.93 -0.19 -11.34 16 19 C 0.52 8.52 7.84 -10.98 -0.09 8.44 16 20 C -0.17 -1.98 10.32 36.01 0.37 -1.60 16 21 O -0.55 -11.45 16.77 5.55 0.09 -11.36 16 22 C -0.09 -1.34 4.88 -104.62 -0.51 -1.85 16 23 C -0.10 -1.40 9.32 -39.58 -0.37 -1.77 16 24 C -0.12 -1.54 9.70 -39.58 -0.38 -1.92 16 25 C -0.10 -1.17 5.88 -104.63 -0.62 -1.79 16 26 C -0.11 -1.01 10.01 36.00 0.36 -0.65 16 27 C -0.12 -1.57 9.70 -39.58 -0.38 -1.96 16 28 C -0.10 -1.49 9.67 -39.59 -0.38 -1.87 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.13 3.16 5.14 -51.93 -0.27 2.89 16 35 H 0.05 1.21 7.36 -51.93 -0.38 0.83 16 36 H 0.27 6.55 8.32 -40.82 -0.34 6.21 16 37 H 0.08 1.42 7.59 -51.93 -0.39 1.03 16 38 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 39 H 0.40 5.43 8.58 -40.82 -0.35 5.08 16 40 H 0.09 0.97 8.12 -51.93 -0.42 0.55 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.12 1.43 7.64 -52.49 -0.40 1.03 16 44 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 45 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 46 H 0.06 0.50 8.09 -51.93 -0.42 0.09 16 47 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 48 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 49 H 0.12 1.78 8.05 -52.49 -0.42 1.35 16 LS Contribution 405.82 15.07 6.12 6.12 Total: -1.00 -31.11 405.82 -8.99 -40.10 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -8.01 Total: 12.98 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.35 Total: -2.84 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.11 Total: -43.91 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: 0.18 Total: -26.24 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.11 -8.99 -40.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484643.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.898 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds