Wall clock time and date at job start Tue Mar 31 2020 16:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47637 * 2 1 4 4 N 1.46495 * 109.47379 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99912 * 270.00030 * 4 3 2 6 6 H 1.08001 * 120.00427 * 135.19948 * 5 4 3 7 7 C 1.38952 * 119.99719 * 315.19724 * 5 4 3 8 8 N 1.31408 * 119.99769 * 2.62862 * 7 5 4 9 9 Si 1.86794 * 119.99827 * 182.63234 * 7 5 4 10 10 H 1.48501 * 109.47332 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47235 * 120.00022 * 9 7 5 12 12 H 1.48499 * 109.47309 * 239.99931 * 9 7 5 13 13 C 1.34774 * 120.00465 * 89.99596 * 4 3 2 14 14 O 1.21292 * 119.99750 * 4.89396 * 13 4 3 15 15 C 1.50705 * 120.00284 * 184.89360 * 13 4 3 16 16 C 1.53008 * 109.46950 * 174.58131 * 15 13 4 17 17 H 1.08993 * 109.47209 * 55.00172 * 16 15 13 18 18 N 1.46496 * 109.46878 * 294.99989 * 16 15 13 19 19 C 1.34771 * 119.99801 * 158.35560 * 18 16 15 20 20 C 1.50708 * 120.00230 * 174.76243 * 19 18 16 21 21 O 1.21285 * 120.00122 * 354.48702 * 19 18 16 22 22 C 1.50703 * 109.46768 * 174.99751 * 16 15 13 23 23 C 1.38238 * 119.99650 * 82.38830 * 22 16 15 24 24 C 1.38238 * 119.99779 * 179.76622 * 23 22 16 25 25 C 1.38234 * 119.99984 * 0.50387 * 24 23 22 26 26 C 1.50693 * 120.00100 * 179.72851 * 25 24 23 27 27 C 1.38237 * 119.99534 * 359.74879 * 25 24 23 28 28 C 1.38229 * 119.99976 * 262.66066 * 22 16 15 29 29 H 1.08998 * 109.46745 * 300.00462 * 1 2 3 30 30 H 1.09003 * 109.46678 * 59.99842 * 1 2 3 31 31 H 1.08993 * 109.47567 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47102 * 239.99717 * 2 1 3 33 33 H 1.09001 * 109.47188 * 120.00260 * 2 1 3 34 34 H 1.08990 * 109.47076 * 59.99876 * 3 2 1 35 35 H 1.09003 * 109.46718 * 299.99648 * 3 2 1 36 36 H 0.97003 * 119.99619 * 185.00506 * 8 7 5 37 37 H 1.08992 * 109.47211 * 54.58312 * 15 13 4 38 38 H 1.08994 * 109.46949 * 294.58095 * 15 13 4 39 39 H 0.97000 * 120.00546 * 338.34335 * 18 16 15 40 40 H 1.08999 * 109.46852 * 179.72206 * 20 19 18 41 41 H 1.09003 * 109.46981 * 299.72301 * 20 19 18 42 42 H 1.09001 * 109.46739 * 59.72227 * 20 19 18 43 43 H 1.07995 * 120.00061 * 359.97438 * 23 22 16 44 44 H 1.08003 * 120.00098 * 180.22966 * 24 23 22 45 45 H 1.09010 * 109.46981 * 270.02123 * 26 25 24 46 46 H 1.08997 * 109.47277 * 30.02042 * 26 25 24 47 47 H 1.08999 * 109.47410 * 150.02657 * 26 25 24 48 48 H 1.08008 * 119.99417 * 179.97438 * 27 25 24 49 49 H 1.07994 * 120.00164 * 0.02562 * 28 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1910 1.4422 1.1864 6 1 5.0358 0.7831 1.3219 7 6 3.7994 2.2900 2.2153 8 7 2.7406 3.0545 2.0695 9 14 4.7781 2.3431 3.8054 10 1 5.9162 1.3932 3.7182 11 1 5.2956 3.7179 4.0225 12 1 3.9001 1.9598 4.9401 13 6 4.1785 1.4424 -1.1680 14 8 3.5750 1.5322 -2.2163 15 6 5.6815 1.3310 -1.1710 16 6 6.1817 1.2190 -2.6126 17 1 5.8072 2.0617 -3.1937 18 7 5.6991 -0.0328 -3.2010 19 6 5.6254 -0.1635 -4.5404 20 6 5.2423 -1.4882 -5.1484 21 8 5.8626 0.7864 -5.2563 22 6 7.6886 1.2313 -2.6238 23 6 8.3911 0.0669 -2.3753 24 6 9.7734 0.0771 -2.3903 25 6 10.4532 1.2538 -2.6435 26 6 11.9600 1.2662 -2.6537 27 6 9.7506 2.4192 -2.8867 28 6 8.3683 2.4080 -2.8769 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6768 1.9562 -0.8901 36 1 2.5089 3.6984 2.7571 37 1 5.9812 0.4444 -0.6125 38 1 6.1123 2.2170 -0.7047 39 1 5.4327 -0.7677 -2.6267 40 1 5.2312 -1.3996 -6.2347 41 1 5.9673 -2.2467 -4.8530 42 1 4.2515 -1.7761 -4.7971 43 1 7.8600 -0.8514 -2.1728 44 1 10.3222 -0.8334 -2.1998 45 1 12.3285 1.4822 -1.6508 46 1 12.3292 0.2921 -2.9745 47 1 12.3124 2.0334 -3.3432 48 1 10.2818 3.3387 -3.0841 49 1 7.8195 3.3186 -3.0662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056484643.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:29 Heat of formation + Delta-G solvation = -81.654694 kcal Electronic energy + Delta-G solvation = -29315.184841 eV Core-core repulsion = 25433.760777 eV Total energy + Delta-G solvation = -3881.424063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.36780 -40.20089 -39.83181 -37.24273 -36.31323 -34.50754 -33.65827 -33.16241 -31.87529 -31.78092 -29.97404 -28.18965 -27.40657 -26.13326 -24.09995 -23.63141 -22.30709 -21.85211 -21.17077 -20.96655 -18.84320 -17.97269 -17.81081 -17.42898 -16.90150 -16.47749 -16.17895 -15.95275 -15.81859 -15.78322 -15.50913 -15.35040 -14.71254 -14.49428 -14.43299 -14.26809 -14.08336 -13.79112 -13.65859 -13.29732 -13.22236 -13.07636 -12.97381 -12.94908 -12.91044 -12.72459 -12.57038 -12.42290 -12.29593 -12.04705 -11.94966 -11.91410 -11.79504 -11.46351 -10.96880 -10.89254 -10.38492 -10.06174 -9.79349 -9.37975 -9.34721 -8.18543 -6.14463 0.40409 0.52883 1.44482 1.49287 1.60756 1.75480 2.06063 2.33653 2.36500 2.80389 3.04779 3.08560 3.80983 3.93274 3.98358 4.03597 4.11093 4.17702 4.22005 4.27269 4.33677 4.47134 4.52276 4.54319 4.60694 4.64772 4.68042 4.78658 4.86473 4.88157 4.91793 4.95183 4.98070 5.01229 5.06839 5.13012 5.21057 5.25811 5.30890 5.41827 5.46314 5.48770 5.52978 5.71624 5.76040 5.78690 6.14747 6.17922 6.49205 6.64758 7.15600 7.36256 7.62549 8.06717 8.77813 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.004250 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.080597 B = 6586.767510 C = 8755.177575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.100 3.900 4 N -0.454 5.454 5 C -0.344 4.344 6 H 0.101 0.899 7 C 0.002 3.998 8 N -0.904 5.904 9 Si 0.983 3.017 10 H -0.252 1.252 11 H -0.284 1.284 12 H -0.281 1.281 13 C 0.465 3.535 14 O -0.625 6.625 15 C -0.107 4.107 16 C 0.212 3.788 17 H 0.054 0.946 18 N -0.701 5.701 19 C 0.505 3.495 20 C -0.162 4.162 21 O -0.603 6.603 22 C -0.106 4.106 23 C -0.106 4.106 24 C -0.125 4.125 25 C -0.096 4.096 26 C -0.109 4.109 27 C -0.128 4.128 28 C -0.123 4.123 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.108 0.892 35 H 0.021 0.979 36 H 0.270 0.730 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.408 0.592 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.134 0.866 44 H 0.147 0.853 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.137 0.863 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.492 -10.172 -3.668 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C -0.024 4.024 4 N -0.173 5.173 5 C -0.471 4.471 6 H 0.119 0.881 7 C -0.199 4.199 8 N -0.542 5.542 9 Si 0.807 3.193 10 H -0.175 1.175 11 H -0.210 1.210 12 H -0.207 1.207 13 C 0.254 3.746 14 O -0.512 6.512 15 C -0.147 4.147 16 C 0.106 3.894 17 H 0.073 0.927 18 N -0.351 5.351 19 C 0.294 3.706 20 C -0.221 4.221 21 O -0.484 6.484 22 C -0.107 4.107 23 C -0.124 4.124 24 C -0.142 4.142 25 C -0.096 4.096 26 C -0.166 4.166 27 C -0.146 4.146 28 C -0.142 4.142 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.244 0.756 40 H 0.108 0.892 41 H 0.136 0.864 42 H 0.118 0.882 43 H 0.152 0.848 44 H 0.165 0.835 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.090 0.910 48 H 0.155 0.845 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.201 -9.385 -4.509 16.039 hybrid contribution -0.459 0.568 1.007 1.244 sum 11.742 -8.817 -3.502 15.096 Atomic orbital electron populations 1.21603 0.94203 1.02164 1.01413 1.21667 0.96809 0.96961 1.00211 1.21732 0.82055 0.96401 1.02188 1.43672 1.05022 1.63692 1.04865 1.19827 1.14195 1.22348 0.90754 0.88147 1.26340 0.96432 0.94435 1.02713 1.69701 1.25158 1.22755 1.36626 0.85017 0.78652 0.78266 0.77401 1.17480 1.21005 1.20685 1.21008 0.90581 0.79436 0.83525 1.90553 1.71341 1.56487 1.32810 1.21567 0.92211 1.05312 0.95592 1.19218 0.89316 0.88009 0.92828 0.92736 1.45789 1.65917 1.16453 1.06915 1.21578 0.75265 0.91699 0.82056 1.21901 1.04887 0.92734 1.02588 1.90653 1.52419 1.43413 1.61935 1.20131 0.94377 0.94992 1.01223 1.21085 0.94646 0.97459 0.99207 1.21315 0.93717 0.98699 1.00512 1.20307 0.97689 0.93066 0.98502 1.20815 0.89002 1.03674 1.03094 1.21214 0.93170 0.99074 1.01097 1.21122 0.95358 0.97597 1.00133 0.92886 0.93349 0.90872 0.94137 0.92650 0.87412 0.96023 0.92014 0.87554 0.88606 0.75571 0.89190 0.86399 0.88183 0.84835 0.83533 0.90248 0.90321 0.90957 0.84520 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 9.91 71.98 0.71 -3.76 16 2 C -0.12 -4.73 6.26 30.59 0.19 -4.54 16 3 C 0.10 4.86 5.05 86.38 0.44 5.29 16 4 N -0.45 -22.27 2.53 -635.55 -1.61 -23.87 16 5 C -0.34 -16.40 8.56 84.04 0.72 -15.69 16 6 H 0.10 4.40 7.11 -2.91 -0.02 4.38 16 7 C 0.00 0.10 5.38 84.93 0.46 0.56 16 8 N -0.90 -47.24 10.72 21.66 0.23 -47.01 16 9 Si 0.98 38.02 29.56 68.60 2.03 40.05 16 10 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 11 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 12 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 13 C 0.46 21.88 7.45 87.66 0.65 22.53 16 14 O -0.62 -32.96 15.00 -3.07 -0.05 -33.01 16 15 C -0.11 -4.02 3.98 29.85 0.12 -3.90 16 16 C 0.21 7.67 1.74 44.25 0.08 7.74 16 17 H 0.05 2.46 7.23 -2.39 -0.02 2.44 16 18 N -0.70 -22.20 3.54 -446.09 -1.58 -23.78 16 19 C 0.50 16.81 7.84 87.66 0.69 17.50 16 20 C -0.16 -3.41 10.32 71.24 0.74 -2.67 16 21 O -0.60 -26.26 16.77 -3.04 -0.05 -26.31 16 22 C -0.11 -3.33 4.88 -19.87 -0.10 -3.42 16 23 C -0.11 -2.72 9.32 22.27 0.21 -2.51 16 24 C -0.12 -2.74 9.70 22.27 0.22 -2.52 16 25 C -0.10 -2.10 5.88 -19.87 -0.12 -2.22 16 26 C -0.11 -1.60 10.01 71.23 0.71 -0.89 16 27 C -0.13 -3.24 9.70 22.27 0.22 -3.02 16 28 C -0.12 -3.83 9.67 22.27 0.22 -3.61 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.11 5.67 5.14 -2.39 -0.01 5.66 16 35 H 0.02 1.13 7.36 -2.39 -0.02 1.11 16 36 H 0.27 13.38 8.32 -92.71 -0.77 12.61 16 37 H 0.11 3.49 7.59 -2.39 -0.02 3.47 16 38 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 39 H 0.41 10.80 8.58 -92.71 -0.80 10.00 16 40 H 0.09 1.87 8.12 -2.39 -0.02 1.85 16 41 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.13 2.90 7.64 -2.91 -0.02 2.88 16 44 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 45 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 47 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 48 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 49 H 0.11 3.52 8.05 -2.91 -0.02 3.50 16 Total: -1.00 -71.06 405.82 5.27 -65.80 By element: Atomic # 1 Polarization: 43.10 SS G_CDS: 0.14 Total: 43.25 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 6.14 Total: 4.88 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -2.95 Total: -94.66 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -0.10 Total: -59.32 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -71.06 5.27 -65.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484643.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.858 kcal (2) G-P(sol) polarization free energy of solvation -71.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds