Wall clock time and date at job start Tue Mar 31 2020 16:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47183 * 2 1 4 4 N 1.46899 * 109.47044 * 179.97438 * 3 2 1 5 5 C 1.46847 * 110.99862 * 170.00059 * 4 3 2 6 6 C 1.53044 * 109.51335 * 174.15436 * 5 4 3 7 7 C 1.53119 * 109.27589 * 59.18419 * 6 5 4 8 8 N 1.46498 * 109.51687 * 182.44060 * 7 6 5 9 9 C 1.46497 * 120.00357 * 60.00230 * 8 7 6 10 10 S 1.65612 * 119.99870 * 239.99807 * 8 7 6 11 11 O 1.42101 * 104.27354 * 206.07382 * 10 8 7 12 12 O 1.42102 * 104.27569 * 333.92984 * 10 8 7 13 13 C 1.81404 * 104.44745 * 90.00148 * 10 8 7 14 14 C 1.52999 * 109.46677 * 179.97438 * 13 10 8 15 15 C 1.53001 * 109.46785 * 179.97438 * 14 13 10 16 16 C 1.50698 * 109.47032 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00117 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00147 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00229 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99923 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47009 * 89.99728 * 20 18 16 22 22 H 1.48502 * 109.47159 * 209.99911 * 20 18 16 23 23 H 1.48504 * 109.47037 * 329.99971 * 20 18 16 24 24 C 1.53120 * 109.16202 * 302.34077 * 7 6 5 25 25 C 1.46847 * 110.99299 * 45.79217 * 4 3 2 26 26 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47300 * 300.00397 * 1 2 3 28 28 H 1.08997 * 109.47114 * 60.00499 * 1 2 3 29 29 H 1.08999 * 109.47300 * 239.99603 * 2 1 3 30 30 H 1.09007 * 109.47157 * 119.99556 * 2 1 3 31 31 H 1.09002 * 109.46622 * 59.99826 * 3 2 1 32 32 H 1.08997 * 109.46688 * 299.99762 * 3 2 1 33 33 H 1.09002 * 109.46448 * 54.14158 * 5 4 3 34 34 H 1.08994 * 109.45958 * 294.16523 * 5 4 3 35 35 H 1.09000 * 109.49745 * 179.12223 * 6 5 4 36 36 H 1.08996 * 109.50070 * 299.23917 * 6 5 4 37 37 H 1.08993 * 109.52284 * 62.25342 * 7 6 5 38 38 H 1.08994 * 109.47360 * 89.99716 * 9 8 7 39 39 H 1.09000 * 109.47076 * 210.00102 * 9 8 7 40 40 H 1.09000 * 109.46949 * 329.99648 * 9 8 7 41 41 H 1.08998 * 109.47024 * 300.00196 * 13 10 8 42 42 H 1.09000 * 109.46954 * 60.00164 * 13 10 8 43 43 H 1.08994 * 109.47295 * 300.00276 * 14 13 10 44 44 H 1.09004 * 109.46763 * 60.00328 * 14 13 10 45 45 H 1.08998 * 109.47222 * 300.00453 * 15 14 13 46 46 H 1.09000 * 109.46648 * 60.00355 * 15 14 13 47 47 H 0.97000 * 119.99998 * 179.97438 * 19 18 16 48 48 H 1.08996 * 109.50328 * 177.59853 * 24 7 6 49 49 H 1.08996 * 109.50004 * 297.72216 * 24 7 6 50 50 H 1.09005 * 109.46836 * 65.83946 * 25 4 3 51 51 H 1.08995 * 109.45748 * 305.85482 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0354 2.7926 -0.2374 6 6 5.5582 2.7816 -0.0857 7 6 6.1592 1.7947 -1.0903 8 7 7.6119 1.7367 -0.9102 9 6 8.1745 1.3179 0.3760 10 16 8.6183 2.1446 -2.1606 11 8 9.8139 1.4229 -1.8978 12 8 7.8490 1.8879 -3.3275 13 6 8.8926 3.9263 -1.9582 14 6 9.8192 4.4288 -3.0671 15 6 10.0500 5.9317 -2.8968 16 6 10.9632 6.4266 -3.9886 17 1 11.3408 5.7381 -4.7302 18 6 11.3167 7.7582 -4.0410 19 7 12.1132 8.1902 -4.9941 20 14 10.6642 8.9489 -2.7579 21 1 11.6027 9.0011 -1.6084 22 1 10.5389 10.3021 -3.3566 23 1 9.3320 8.4899 -2.2888 24 6 5.5583 0.4067 -0.8523 25 6 4.0355 0.4864 -0.9818 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6032 3.4837 0.4862 34 1 3.7731 3.1119 -1.2460 35 1 5.9501 3.7805 -0.2777 36 1 5.8208 2.4755 0.9269 37 1 5.9298 2.1221 -2.1043 38 1 8.3144 0.2369 0.3766 39 1 9.1355 1.8088 0.5293 40 1 7.4921 1.5963 1.1790 41 1 7.9383 4.4497 -2.0165 42 1 9.3520 4.1152 -0.9879 43 1 10.7734 3.9053 -3.0084 44 1 9.3601 4.2398 -4.0376 45 1 9.0956 6.4549 -2.9557 46 1 10.5088 6.1210 -1.9263 47 1 12.3615 9.1272 -5.0311 48 1 5.9504 -0.2913 -1.5919 49 1 5.8209 0.0632 0.1483 50 1 3.7733 0.8168 -1.9869 51 1 3.6034 -0.4974 -0.7986 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068900220.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:07 Heat of formation + Delta-G solvation = -84.397029 kcal Electronic energy + Delta-G solvation = -27586.864637 eV Core-core repulsion = 23840.765609 eV Total energy + Delta-G solvation = -3746.099029 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.80562 -37.03680 -36.89597 -35.78502 -34.81820 -34.10883 -32.22313 -31.36507 -31.01656 -28.38454 -27.17217 -25.74113 -24.05574 -23.50365 -22.94780 -21.05456 -20.43183 -19.87872 -18.86060 -17.63280 -16.93045 -16.84119 -16.05704 -15.98184 -15.71121 -15.26963 -15.05077 -14.45609 -14.35077 -14.19721 -14.14101 -13.97016 -13.61914 -13.13725 -12.93398 -12.75650 -12.64327 -12.55929 -12.36223 -12.14866 -12.09517 -11.91652 -11.85524 -11.79597 -11.59914 -11.58232 -11.44157 -11.27837 -11.11499 -11.00736 -10.95869 -10.81660 -10.54839 -10.10407 -9.88613 -9.71134 -9.29095 -9.00893 -8.65235 -8.59805 -6.09377 -4.08688 0.36180 2.66289 3.25544 3.33070 3.35044 3.51500 3.94601 4.21046 4.32273 4.39237 4.40382 4.57548 4.63212 4.71584 4.73894 4.90175 4.92310 5.01982 5.06119 5.07631 5.13248 5.22073 5.24237 5.26424 5.31149 5.32288 5.36793 5.38337 5.53041 5.55630 5.61059 5.64218 5.69358 5.75936 5.76016 5.83657 5.85938 5.90954 6.11864 6.16520 6.25736 6.45227 6.65836 6.73574 6.74939 7.11340 7.25406 7.70005 8.46675 8.94996 9.51653 11.03876 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.002589 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.419724 B =10812.607313 C =11785.828118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.055 3.945 4 N -0.540 5.540 5 C 0.057 3.943 6 C -0.130 4.130 7 C 0.146 3.854 8 N -1.002 6.002 9 C 0.094 3.906 10 S 2.598 3.402 11 O -0.956 6.956 12 O -0.958 6.958 13 C -0.616 4.616 14 C -0.098 4.098 15 C -0.004 4.004 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 C -0.121 4.121 25 C 0.049 3.951 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.020 0.980 46 H 0.015 0.985 47 H 0.264 0.736 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.037 0.963 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.559 -16.038 14.702 30.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.073 4.073 4 N -0.265 5.265 5 C -0.072 4.072 6 C -0.169 4.169 7 C 0.039 3.961 8 N -0.838 5.838 9 C -0.051 4.051 10 S 2.695 3.305 11 O -0.946 6.946 12 O -0.949 6.949 13 C -0.747 4.747 14 C -0.137 4.137 15 C -0.042 4.042 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.135 4.135 19 N -0.538 5.538 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.160 4.160 25 C -0.079 4.079 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.055 0.945 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.959 -16.657 14.459 30.426 hybrid contribution -0.633 1.706 0.241 1.836 sum -21.592 -14.951 14.700 30.097 Atomic orbital electron populations 1.21739 0.95515 1.01833 1.01855 1.21708 0.95771 0.96489 1.02743 1.22163 0.87012 0.97220 1.00892 1.62040 1.07212 1.07198 1.50001 1.22064 0.94982 0.89981 1.00158 1.22023 0.94341 0.99638 1.00927 1.20966 0.78645 0.96174 1.00271 1.57671 1.15745 1.82221 1.28152 1.21410 0.98537 1.00474 0.84706 1.05473 0.73543 0.78176 0.73340 1.93574 1.47106 1.69511 1.84451 1.93560 1.70223 1.84474 1.46601 1.30656 1.10168 1.24069 1.09820 1.21311 0.96864 1.01140 0.94370 1.19524 0.97209 0.89987 0.97523 1.21136 1.28484 0.94847 1.12041 0.90736 1.25032 0.94599 0.98270 0.95554 1.69911 1.35347 1.15752 1.32835 0.86771 0.80005 0.80463 0.81986 1.20212 1.21261 1.19074 1.21903 0.94132 0.96787 1.03216 1.22224 0.94945 0.97204 0.93529 0.92515 0.92618 0.92803 0.91568 0.91065 0.90676 0.94813 0.90323 0.94419 0.90759 0.90149 0.88329 0.92503 0.91045 0.90890 0.85574 0.85471 0.91034 0.91049 0.96221 0.96628 0.92622 0.90862 0.90463 0.94506 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.13 -0.76 5.18 -26.73 -0.14 -0.89 16 3 C 0.05 0.37 5.27 -3.82 -0.02 0.35 16 4 N -0.54 -4.24 4.81 -234.66 -1.13 -5.37 16 5 C 0.06 0.44 5.43 -3.83 -0.02 0.42 16 6 C -0.13 -1.07 5.40 -26.65 -0.14 -1.21 16 7 C 0.15 1.44 2.52 -67.81 -0.17 1.27 16 8 N -1.00 -10.90 3.01 -114.49 -0.34 -11.25 16 9 C 0.09 0.83 9.20 59.85 0.55 1.38 16 10 S 2.60 37.71 5.37 -107.50 -0.58 37.13 16 11 O -0.96 -16.55 17.09 -57.54 -0.98 -17.53 16 12 O -0.96 -16.44 16.57 -57.54 -0.95 -17.39 16 13 C -0.62 -8.94 6.18 37.16 0.23 -8.71 16 14 C -0.10 -1.91 5.16 -26.73 -0.14 -2.05 16 15 C 0.00 -0.09 4.04 -27.88 -0.11 -0.20 16 16 C -0.53 -15.05 9.66 -34.44 -0.33 -15.38 16 17 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 20 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 24 C -0.12 -1.08 5.41 -26.65 -0.14 -1.22 16 25 C 0.05 0.39 4.85 -3.83 -0.02 0.38 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.39 6.21 -51.93 -0.32 0.07 16 30 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.03 0.23 8.08 -51.93 -0.42 -0.18 16 33 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.63 6.58 -51.93 -0.34 0.28 16 37 H 0.10 1.09 6.88 -51.93 -0.36 0.73 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.61 7.79 -51.93 -0.40 0.21 16 40 H 0.07 0.50 6.39 -51.93 -0.33 0.16 16 41 H 0.13 1.59 8.14 -51.92 -0.42 1.17 16 42 H 0.13 1.59 8.14 -51.92 -0.42 1.17 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 46 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.08 0.65 7.59 -51.93 -0.39 0.26 16 50 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.08 0.59 5.81 -51.93 -0.30 0.29 16 LS Contribution 401.22 15.07 6.05 6.05 Total: -1.00 -34.59 401.22 -11.59 -46.18 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -9.57 Total: -3.22 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -0.19 Total: -24.40 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.70 Total: -43.57 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -1.94 Total: -34.92 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 37.71 SS G_CDS: -0.58 Total: 37.13 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.59 -11.59 -46.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068900220.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.218 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds