Wall clock time and date at job start Tue Mar 31 2020 16:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47183 * 2 1 4 4 N 1.46899 * 109.47044 * 179.97438 * 3 2 1 5 5 C 1.46847 * 110.99862 * 170.00059 * 4 3 2 6 6 C 1.53044 * 109.51335 * 174.15436 * 5 4 3 7 7 C 1.53119 * 109.27589 * 59.18419 * 6 5 4 8 8 N 1.46498 * 109.51687 * 182.44060 * 7 6 5 9 9 C 1.46497 * 120.00357 * 60.00230 * 8 7 6 10 10 S 1.65612 * 119.99870 * 239.99807 * 8 7 6 11 11 O 1.42101 * 104.27354 * 206.07382 * 10 8 7 12 12 O 1.42102 * 104.27569 * 333.92984 * 10 8 7 13 13 C 1.81404 * 104.44745 * 90.00148 * 10 8 7 14 14 C 1.52999 * 109.46677 * 179.97438 * 13 10 8 15 15 C 1.53001 * 109.46785 * 179.97438 * 14 13 10 16 16 C 1.50698 * 109.47032 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00117 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00147 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00229 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99923 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47009 * 89.99728 * 20 18 16 22 22 H 1.48502 * 109.47159 * 209.99911 * 20 18 16 23 23 H 1.48504 * 109.47037 * 329.99971 * 20 18 16 24 24 C 1.53120 * 109.16202 * 302.34077 * 7 6 5 25 25 C 1.46847 * 110.99299 * 45.79217 * 4 3 2 26 26 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47300 * 300.00397 * 1 2 3 28 28 H 1.08997 * 109.47114 * 60.00499 * 1 2 3 29 29 H 1.08999 * 109.47300 * 239.99603 * 2 1 3 30 30 H 1.09007 * 109.47157 * 119.99556 * 2 1 3 31 31 H 1.09002 * 109.46622 * 59.99826 * 3 2 1 32 32 H 1.08997 * 109.46688 * 299.99762 * 3 2 1 33 33 H 1.09002 * 109.46448 * 54.14158 * 5 4 3 34 34 H 1.08994 * 109.45958 * 294.16523 * 5 4 3 35 35 H 1.09000 * 109.49745 * 179.12223 * 6 5 4 36 36 H 1.08996 * 109.50070 * 299.23917 * 6 5 4 37 37 H 1.08993 * 109.52284 * 62.25342 * 7 6 5 38 38 H 1.08994 * 109.47360 * 89.99716 * 9 8 7 39 39 H 1.09000 * 109.47076 * 210.00102 * 9 8 7 40 40 H 1.09000 * 109.46949 * 329.99648 * 9 8 7 41 41 H 1.08998 * 109.47024 * 300.00196 * 13 10 8 42 42 H 1.09000 * 109.46954 * 60.00164 * 13 10 8 43 43 H 1.08994 * 109.47295 * 300.00276 * 14 13 10 44 44 H 1.09004 * 109.46763 * 60.00328 * 14 13 10 45 45 H 1.08998 * 109.47222 * 300.00453 * 15 14 13 46 46 H 1.09000 * 109.46648 * 60.00355 * 15 14 13 47 47 H 0.97000 * 119.99998 * 179.97438 * 19 18 16 48 48 H 1.08996 * 109.50328 * 177.59853 * 24 7 6 49 49 H 1.08996 * 109.50004 * 297.72216 * 24 7 6 50 50 H 1.09005 * 109.46836 * 65.83946 * 25 4 3 51 51 H 1.08995 * 109.45748 * 305.85482 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0354 2.7926 -0.2374 6 6 5.5582 2.7816 -0.0857 7 6 6.1592 1.7947 -1.0903 8 7 7.6119 1.7367 -0.9102 9 6 8.1745 1.3179 0.3760 10 16 8.6183 2.1446 -2.1606 11 8 9.8139 1.4229 -1.8978 12 8 7.8490 1.8879 -3.3275 13 6 8.8926 3.9263 -1.9582 14 6 9.8192 4.4288 -3.0671 15 6 10.0500 5.9317 -2.8968 16 6 10.9632 6.4266 -3.9886 17 1 11.3408 5.7381 -4.7302 18 6 11.3167 7.7582 -4.0410 19 7 12.1132 8.1902 -4.9941 20 14 10.6642 8.9489 -2.7579 21 1 11.6027 9.0011 -1.6084 22 1 10.5389 10.3021 -3.3566 23 1 9.3320 8.4899 -2.2888 24 6 5.5583 0.4067 -0.8523 25 6 4.0355 0.4864 -0.9818 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6032 3.4837 0.4862 34 1 3.7731 3.1119 -1.2460 35 1 5.9501 3.7805 -0.2777 36 1 5.8208 2.4755 0.9269 37 1 5.9298 2.1221 -2.1043 38 1 8.3144 0.2369 0.3766 39 1 9.1355 1.8088 0.5293 40 1 7.4921 1.5963 1.1790 41 1 7.9383 4.4497 -2.0165 42 1 9.3520 4.1152 -0.9879 43 1 10.7734 3.9053 -3.0084 44 1 9.3601 4.2398 -4.0376 45 1 9.0956 6.4549 -2.9557 46 1 10.5088 6.1210 -1.9263 47 1 12.3615 9.1272 -5.0311 48 1 5.9504 -0.2913 -1.5919 49 1 5.8209 0.0632 0.1483 50 1 3.7733 0.8168 -1.9869 51 1 3.6034 -0.4974 -0.7986 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068900220.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:07 Heat of formation + Delta-G solvation = -108.887576 kcal Electronic energy + Delta-G solvation = -27587.926627 eV Core-core repulsion = 23840.765609 eV Total energy + Delta-G solvation = -3747.161018 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.45418 -38.26640 -37.62930 -37.04024 -36.52432 -34.68638 -34.26430 -32.01751 -31.61775 -30.16978 -27.84529 -26.37823 -25.40143 -24.52468 -23.63111 -22.21653 -21.54042 -20.57830 -19.91352 -18.99619 -18.67939 -17.66555 -17.33624 -16.90297 -16.29525 -16.22846 -16.11632 -15.83555 -15.49347 -15.16918 -14.86809 -14.83255 -14.68499 -14.24620 -14.08938 -13.74107 -13.65506 -13.54990 -13.31370 -13.24780 -13.21448 -13.11238 -13.02884 -12.72281 -12.68580 -12.57356 -12.37502 -12.21729 -12.08118 -11.91489 -11.86079 -11.67206 -11.61558 -11.58641 -11.42790 -11.21461 -11.14250 -10.78824 -9.89648 -9.24966 -8.31098 -6.37348 -0.79438 1.35874 1.38631 1.50257 1.65048 2.35333 2.79424 2.94709 3.03784 3.11539 3.52496 3.73364 3.81973 3.85797 4.00847 4.05677 4.09721 4.16275 4.30017 4.31265 4.43778 4.45037 4.52818 4.56593 4.61118 4.66991 4.72930 4.75745 4.81060 4.83390 4.85030 4.89782 4.95089 4.97040 5.00313 5.06827 5.17433 5.23223 5.24006 5.31184 5.32022 5.41420 5.43511 5.48393 5.60916 5.64715 6.14638 6.17171 6.23644 6.70710 7.27248 8.85840 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.002589 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.419724 B =10812.607313 C =11785.828118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.055 3.945 4 N -0.542 5.542 5 C 0.055 3.945 6 C -0.125 4.125 7 C 0.140 3.860 8 N -0.992 5.992 9 C 0.085 3.915 10 S 2.612 3.388 11 O -0.988 6.988 12 O -0.991 6.991 13 C -0.608 4.608 14 C -0.103 4.103 15 C -0.004 4.004 16 C -0.545 4.545 17 H 0.028 0.972 18 C 0.000 4.000 19 N -0.952 5.952 20 Si 0.956 3.044 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.238 1.238 24 C -0.119 4.119 25 C 0.052 3.948 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.030 0.970 33 H 0.091 0.909 34 H 0.030 0.970 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.032 0.968 46 H 0.032 0.968 47 H 0.267 0.733 48 H 0.061 0.939 49 H 0.086 0.914 50 H 0.027 0.973 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.784 -15.604 18.063 33.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.073 4.073 4 N -0.267 5.267 5 C -0.074 4.074 6 C -0.164 4.164 7 C 0.034 3.966 8 N -0.829 5.829 9 C -0.060 4.060 10 S 2.710 3.290 11 O -0.978 6.978 12 O -0.981 6.981 13 C -0.739 4.739 14 C -0.143 4.143 15 C -0.042 4.042 16 C -0.583 4.583 17 H 0.047 0.953 18 C -0.197 4.197 19 N -0.592 5.592 20 Si 0.779 3.221 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.161 1.161 24 C -0.158 4.158 25 C -0.077 4.077 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.109 0.891 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.170 0.830 42 H 0.173 0.827 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.050 0.950 46 H 0.050 0.950 47 H 0.076 0.924 48 H 0.080 0.920 49 H 0.104 0.896 50 H 0.045 0.955 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.189 -16.252 17.818 33.457 hybrid contribution 0.070 1.485 -0.867 1.721 sum -23.119 -14.767 16.951 32.248 Atomic orbital electron populations 1.21722 0.94877 1.02172 1.01984 1.21671 0.96304 0.95905 1.02495 1.22201 0.86350 0.97757 1.00958 1.62076 1.07868 1.07149 1.49624 1.22109 0.94870 0.90216 1.00176 1.22008 0.94349 0.99385 1.00666 1.21122 0.77862 0.97349 1.00260 1.57347 1.15724 1.81819 1.28055 1.21674 0.99462 1.00722 0.84106 1.04771 0.72964 0.77997 0.73308 1.93529 1.48879 1.70424 1.84983 1.93516 1.70777 1.84970 1.48841 1.30553 1.10384 1.23945 1.09054 1.21178 0.97856 0.99104 0.96136 1.19493 0.96402 0.92263 0.96057 1.21554 1.29408 0.94639 1.12723 0.95321 1.26141 0.94784 1.00595 0.98195 1.70087 1.37247 1.16468 1.35409 0.85572 0.80667 0.77176 0.78718 1.18878 1.21102 1.16112 1.21883 0.94652 0.95982 1.03312 1.22198 0.94364 0.97894 0.93201 0.92102 0.92216 0.92941 0.91869 0.91195 0.90076 0.95218 0.89092 0.95137 0.90002 0.89113 0.89843 0.92428 0.90582 0.88166 0.83034 0.82654 0.92006 0.92137 0.94963 0.95009 0.92415 0.91999 0.89569 0.95472 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.13 -1.26 5.18 30.60 0.16 -1.11 16 3 C 0.05 0.63 5.27 86.30 0.46 1.09 16 4 N -0.54 -7.37 4.81 -896.34 -4.31 -11.67 16 5 C 0.05 0.73 5.43 86.33 0.47 1.19 16 6 C -0.12 -1.67 5.40 30.65 0.17 -1.50 16 7 C 0.14 2.51 2.52 45.07 0.11 2.63 16 8 N -0.99 -19.61 3.01 -516.12 -1.55 -21.16 16 9 C 0.08 1.26 9.20 127.77 1.18 2.44 16 10 S 2.61 73.58 5.37 -56.49 -0.30 73.27 16 11 O -0.99 -33.86 17.09 -127.65 -2.18 -36.04 16 12 O -0.99 -34.18 16.57 -127.65 -2.12 -36.30 16 13 C -0.61 -16.22 6.18 71.98 0.44 -15.77 16 14 C -0.10 -4.01 5.16 30.59 0.16 -3.85 16 15 C 0.00 -0.16 4.04 29.85 0.12 -0.04 16 16 C -0.55 -31.82 9.66 25.60 0.25 -31.58 16 17 H 0.03 1.86 7.99 -2.91 -0.02 1.83 16 18 C 0.00 -0.03 5.47 84.65 0.46 0.44 16 19 N -0.95 -60.28 13.96 21.45 0.30 -59.99 16 20 Si 0.96 43.18 27.47 68.60 1.88 45.06 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 24 C -0.12 -1.94 5.41 30.65 0.17 -1.77 16 25 C 0.05 0.76 4.85 86.33 0.42 1.18 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.67 6.21 -2.39 -0.01 0.65 16 30 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.03 0.37 8.08 -2.39 -0.02 0.35 16 33 H 0.09 1.00 8.12 -2.39 -0.02 0.98 16 34 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.05 6.58 -2.39 -0.02 1.03 16 37 H 0.08 1.77 6.88 -2.39 -0.02 1.76 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 1.09 7.79 -2.39 -0.02 1.07 16 40 H 0.10 0.97 6.39 -2.39 -0.02 0.95 16 41 H 0.15 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.16 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 45 H 0.03 1.38 7.20 -2.39 -0.02 1.37 16 46 H 0.03 1.34 7.57 -2.39 -0.02 1.33 16 47 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 48 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.09 1.25 7.59 -2.39 -0.02 1.23 16 50 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 51 H 0.09 1.19 5.81 -2.39 -0.01 1.17 16 Total: -1.00 -76.78 401.22 -2.20 -78.97 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.81 Total: 15.05 kcal Atomic # 6 Polarization: -52.47 SS G_CDS: 5.27 Total: -47.21 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -5.56 Total: -92.82 kcal Atomic # 8 Polarization: -68.04 SS G_CDS: -4.30 Total: -72.34 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.06 kcal Atomic # 16 Polarization: 73.58 SS G_CDS: -0.30 Total: 73.27 kcal Total: -76.78 -2.20 -78.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068900220.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.916 kcal (2) G-P(sol) polarization free energy of solvation -76.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds