Wall clock time and date at job start Tue Mar 31 2020 16:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47636 * 2 1 4 4 N 1.46493 * 109.47547 * 180.02562 * 3 2 1 5 5 C 1.37099 * 120.00300 * 274.45860 * 4 3 2 6 6 H 1.08003 * 120.00187 * 134.00942 * 5 4 3 7 7 C 1.38943 * 119.99985 * 314.01604 * 5 4 3 8 8 N 1.31421 * 120.00190 * 3.59824 * 7 5 4 9 9 Si 1.86807 * 120.00174 * 183.59599 * 7 5 4 10 10 H 1.48494 * 109.46690 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46918 * 119.99565 * 9 7 5 12 12 H 1.48501 * 109.47080 * 239.99893 * 9 7 5 13 13 C 1.34774 * 119.99867 * 94.45713 * 4 3 2 14 14 O 1.21296 * 120.00218 * 5.29341 * 13 4 3 15 15 C 1.50706 * 120.00060 * 185.28940 * 13 4 3 16 16 H 1.09003 * 109.50337 * 49.91785 * 15 13 4 17 17 C 1.53098 * 109.50582 * 289.83028 * 15 13 4 18 18 N 1.47014 * 109.25562 * 183.17090 * 17 15 13 19 19 C 1.46899 * 110.99929 * 182.39348 * 18 17 15 20 20 C 1.50703 * 109.47194 * 169.99829 * 19 18 17 21 21 C 1.38230 * 120.00219 * 269.72590 * 20 19 18 22 22 C 1.38236 * 120.00332 * 179.80946 * 21 20 19 23 23 C 1.38244 * 119.99524 * 0.40017 * 22 21 20 24 24 C 1.38233 * 120.00105 * 359.85624 * 23 22 21 25 25 C 1.38232 * 119.99752 * 90.00597 * 20 19 18 26 26 C 1.47010 * 110.75664 * 58.61761 * 18 17 15 27 27 C 1.53097 * 109.25475 * 301.38809 * 26 18 17 28 28 O 1.43012 * 109.54192 * 170.02583 * 15 13 4 29 29 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46837 * 299.99923 * 1 2 3 31 31 H 1.09005 * 109.47120 * 59.99418 * 1 2 3 32 32 H 1.09000 * 109.46837 * 240.00077 * 2 1 3 33 33 H 1.08998 * 109.47479 * 120.00741 * 2 1 3 34 34 H 1.09000 * 109.46944 * 60.00142 * 3 2 1 35 35 H 1.09005 * 109.47341 * 300.00447 * 3 2 1 36 36 H 0.96997 * 120.00055 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.50749 * 63.24281 * 17 15 13 38 38 H 1.08998 * 109.50962 * 303.10464 * 17 15 13 39 39 H 1.09001 * 109.46965 * 50.00281 * 19 18 17 40 40 H 1.08990 * 109.47268 * 290.00310 * 19 18 17 41 41 H 1.08003 * 120.00014 * 359.97438 * 21 20 19 42 42 H 1.07999 * 120.00536 * 180.23446 * 22 21 20 43 43 H 1.07997 * 119.99471 * 179.83558 * 23 22 21 44 44 H 1.07995 * 119.99902 * 179.97438 * 24 23 22 45 45 H 1.08005 * 120.00001 * 359.97127 * 25 20 19 46 46 H 1.09005 * 109.50642 * 61.31473 * 26 18 17 47 47 H 1.08993 * 109.50967 * 181.44436 * 26 18 17 48 48 H 1.09003 * 109.50657 * 296.90377 * 27 26 18 49 49 H 1.09005 * 109.50614 * 176.78080 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1911 1.3499 1.1828 6 1 5.0239 0.6681 1.2723 7 6 3.8149 2.1332 2.2669 8 7 2.7585 2.9104 2.1811 9 14 4.8105 2.0817 3.8467 10 1 5.9431 1.1348 3.6872 11 1 5.3377 3.4377 4.1440 12 1 3.9423 1.6320 4.9645 13 6 4.1784 1.5333 -1.1646 14 8 3.5754 1.7115 -2.2018 15 6 5.6806 1.4135 -1.1774 16 1 5.9796 0.5252 -0.6210 17 6 6.2980 2.6551 -0.5283 18 7 7.7632 2.5681 -0.6119 19 6 8.3973 3.7153 0.0512 20 6 9.8807 3.4741 0.1629 21 6 10.3965 2.8450 1.2804 22 6 11.7567 2.6201 1.3811 23 6 12.6021 3.0319 0.3677 24 6 12.0869 3.6657 -0.7475 25 6 10.7262 3.8871 -0.8497 26 6 8.1998 2.4612 -2.0116 27 6 7.5632 1.2216 -2.6457 28 8 6.1406 1.3089 -2.5274 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 2.4961 3.4575 2.9378 37 1 5.9956 2.7076 0.5176 38 1 5.9560 3.5478 -1.0520 39 1 7.9733 3.8389 1.0477 40 1 8.2189 4.6173 -0.5339 41 1 9.7364 2.5267 2.0738 42 1 12.1593 2.1252 2.2525 43 1 13.6651 2.8586 0.4476 44 1 12.7474 3.9878 -1.5389 45 1 10.3237 4.3823 -1.7211 46 1 7.8881 3.3508 -2.5590 47 1 9.2854 2.3722 -2.0484 48 1 7.9170 0.3276 -2.1321 49 1 7.8383 1.1698 -3.6992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078088524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:07 Heat of formation + Delta-G solvation = -45.552174 kcal Electronic energy + Delta-G solvation = -29672.887250 eV Core-core repulsion = 25793.028709 eV Total energy + Delta-G solvation = -3879.858541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -39.89871 -39.08728 -37.85702 -35.61040 -34.90116 -32.86581 -31.73674 -31.38631 -30.98068 -30.51740 -27.80809 -25.89524 -25.05863 -23.99901 -23.64453 -22.53255 -21.32107 -20.63636 -20.01256 -19.22595 -17.33743 -16.80389 -16.29623 -15.79746 -15.51660 -15.35774 -15.17698 -14.65364 -14.51483 -14.33022 -14.16333 -14.01690 -13.73711 -13.45318 -13.34298 -13.30315 -12.82910 -12.51675 -12.43463 -12.21695 -11.75751 -11.55596 -11.44185 -11.39799 -11.21942 -11.04650 -11.00158 -10.92476 -10.81921 -10.68117 -10.42000 -10.23503 -10.20421 -9.65178 -9.23003 -9.06801 -8.93722 -8.82531 -8.37041 -8.11487 -7.46698 -6.31312 -4.25175 1.29047 1.36883 3.05225 3.16232 3.19345 3.60812 3.81921 3.88756 4.15382 4.27608 4.75024 4.81409 4.91582 4.94467 5.04879 5.06951 5.22005 5.30910 5.38359 5.46127 5.51312 5.59240 5.66476 5.76239 5.78852 5.84927 5.87565 5.96935 5.98115 5.99208 6.03877 6.08245 6.26221 6.35824 6.41416 6.46050 6.53656 6.57935 6.61536 6.63296 6.76827 6.89176 6.95457 7.19104 7.20099 7.22654 7.30001 7.61662 7.71899 8.01699 8.37733 9.01865 9.46529 9.89892 10.60794 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.003841 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.303008 B = 7287.677853 C = 8857.371436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.100 3.900 4 N -0.440 5.440 5 C -0.336 4.336 6 H 0.088 0.912 7 C 0.049 3.951 8 N -0.866 5.866 9 Si 0.910 3.090 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.487 3.513 14 O -0.583 6.583 15 C 0.100 3.900 16 H 0.080 0.920 17 C 0.036 3.964 18 N -0.529 5.529 19 C 0.091 3.909 20 C -0.070 4.070 21 C -0.098 4.098 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.116 4.116 26 C 0.014 3.986 27 C 0.065 3.935 28 O -0.365 6.365 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.127 0.873 35 H 0.051 0.949 36 H 0.270 0.730 37 H 0.118 0.882 38 H 0.038 0.962 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.039 0.961 47 H 0.083 0.917 48 H 0.055 0.945 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.893 0.449 -0.606 13.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C -0.023 4.023 4 N -0.160 5.160 5 C -0.465 4.465 6 H 0.106 0.894 7 C -0.157 4.157 8 N -0.503 5.503 9 Si 0.736 3.264 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.273 3.727 14 O -0.466 6.466 15 C 0.039 3.961 16 H 0.098 0.902 17 C -0.092 4.092 18 N -0.253 5.253 19 C -0.037 4.037 20 C -0.070 4.070 21 C -0.116 4.116 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.142 4.142 25 C -0.134 4.134 26 C -0.115 4.115 27 C -0.013 4.013 28 O -0.283 6.283 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.136 0.864 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.057 0.943 47 H 0.102 0.898 48 H 0.073 0.927 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.455 0.254 -0.900 13.487 hybrid contribution 0.503 0.684 0.712 1.108 sum 13.958 0.938 -0.188 13.991 Atomic orbital electron populations 1.21646 0.96683 1.00280 1.01384 1.21800 0.94601 0.99609 1.00931 1.21840 0.81152 0.94776 1.04558 1.43313 1.04842 1.63562 1.04265 1.19458 1.15249 1.22514 0.89230 0.89405 1.25514 0.96067 0.94422 0.99660 1.69574 1.23368 1.25495 1.31838 0.86109 0.80158 0.78497 0.81603 1.18807 1.20417 1.20542 1.19978 0.87632 0.80312 0.84751 1.90550 1.69775 1.53274 1.33024 1.21721 0.93619 0.98201 0.82589 0.90241 1.22730 0.85003 0.96864 1.04561 1.62256 1.07602 1.41083 1.14401 1.21069 0.90270 0.91828 1.00491 1.19809 0.94996 0.97818 0.94381 1.21106 0.95126 0.97511 0.97869 1.21155 0.93665 1.00226 0.98951 1.21110 0.99529 0.99316 0.94417 1.21077 0.95160 0.99788 0.98137 1.21080 0.93480 1.00444 0.98421 1.22878 1.00760 0.98741 0.89073 1.22598 0.81822 0.96454 1.00429 1.88083 1.19911 1.94366 1.25890 0.93799 0.92846 0.93300 0.93693 0.92207 0.85605 0.93081 0.91936 0.86414 0.94377 0.89383 0.93900 0.85746 0.86212 0.86448 0.86359 0.86421 0.94262 0.89844 0.92708 0.88888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.91 37.16 0.37 -2.09 16 2 C -0.13 -2.73 6.24 -26.73 -0.17 -2.89 16 3 C 0.10 2.39 5.15 -4.05 -0.02 2.37 16 4 N -0.44 -10.93 2.53 -114.81 -0.29 -11.22 16 5 C -0.34 -8.07 6.56 -14.94 -0.10 -8.16 16 6 H 0.09 2.05 7.02 -52.48 -0.37 1.68 16 7 C 0.05 1.16 5.41 -17.47 -0.09 1.06 16 8 N -0.87 -21.70 10.74 55.50 0.60 -21.10 16 9 Si 0.91 18.45 29.55 -169.99 -5.02 13.43 16 10 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 11 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 13 C 0.49 12.27 7.03 -10.98 -0.08 12.20 16 14 O -0.58 -16.44 16.03 -14.11 -0.23 -16.67 16 15 C 0.10 2.14 2.49 -27.83 -0.07 2.07 16 16 H 0.08 1.68 7.38 -51.93 -0.38 1.29 16 17 C 0.04 0.70 4.72 -3.71 -0.02 0.68 16 18 N -0.53 -8.57 4.72 -235.76 -1.11 -9.68 16 19 C 0.09 1.29 5.12 -4.98 -0.03 1.26 16 20 C -0.07 -0.89 4.90 -104.63 -0.51 -1.40 16 21 C -0.10 -1.20 9.70 -39.59 -0.38 -1.58 16 22 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 23 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 25 C -0.12 -1.31 7.94 -39.58 -0.31 -1.62 16 26 C 0.01 0.20 5.28 -3.71 -0.02 0.18 16 27 C 0.06 1.01 7.01 37.21 0.26 1.27 16 28 O -0.36 -7.65 10.03 -54.89 -0.55 -8.20 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.13 3.18 5.16 -51.93 -0.27 2.91 16 35 H 0.05 1.29 7.23 -51.93 -0.38 0.91 16 36 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 37 H 0.12 2.45 6.13 -51.93 -0.32 2.13 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.26 7.98 -51.93 -0.41 0.85 16 40 H 0.04 0.59 8.06 -51.93 -0.42 0.17 16 41 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.12 1.21 8.00 -52.48 -0.42 0.79 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 1.07 6.01 -51.93 -0.31 0.76 16 48 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -29.13 389.30 -11.01 -40.14 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.91 Total: 9.05 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.36 Total: -1.62 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -0.81 Total: -42.00 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.78 Total: -24.87 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.13 -11.01 -40.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078088524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.407 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds