Wall clock time and date at job start Tue Mar 31 2020 16:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47636 * 2 1 4 4 N 1.46493 * 109.47547 * 180.02562 * 3 2 1 5 5 C 1.37099 * 120.00300 * 274.45860 * 4 3 2 6 6 H 1.08003 * 120.00187 * 134.00942 * 5 4 3 7 7 C 1.38943 * 119.99985 * 314.01604 * 5 4 3 8 8 N 1.31421 * 120.00190 * 3.59824 * 7 5 4 9 9 Si 1.86807 * 120.00174 * 183.59599 * 7 5 4 10 10 H 1.48494 * 109.46690 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46918 * 119.99565 * 9 7 5 12 12 H 1.48501 * 109.47080 * 239.99893 * 9 7 5 13 13 C 1.34774 * 119.99867 * 94.45713 * 4 3 2 14 14 O 1.21296 * 120.00218 * 5.29341 * 13 4 3 15 15 C 1.50706 * 120.00060 * 185.28940 * 13 4 3 16 16 H 1.09003 * 109.50337 * 49.91785 * 15 13 4 17 17 C 1.53098 * 109.50582 * 289.83028 * 15 13 4 18 18 N 1.47014 * 109.25562 * 183.17090 * 17 15 13 19 19 C 1.46899 * 110.99929 * 182.39348 * 18 17 15 20 20 C 1.50703 * 109.47194 * 169.99829 * 19 18 17 21 21 C 1.38230 * 120.00219 * 269.72590 * 20 19 18 22 22 C 1.38236 * 120.00332 * 179.80946 * 21 20 19 23 23 C 1.38244 * 119.99524 * 0.40017 * 22 21 20 24 24 C 1.38233 * 120.00105 * 359.85624 * 23 22 21 25 25 C 1.38232 * 119.99752 * 90.00597 * 20 19 18 26 26 C 1.47010 * 110.75664 * 58.61761 * 18 17 15 27 27 C 1.53097 * 109.25475 * 301.38809 * 26 18 17 28 28 O 1.43012 * 109.54192 * 170.02583 * 15 13 4 29 29 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46837 * 299.99923 * 1 2 3 31 31 H 1.09005 * 109.47120 * 59.99418 * 1 2 3 32 32 H 1.09000 * 109.46837 * 240.00077 * 2 1 3 33 33 H 1.08998 * 109.47479 * 120.00741 * 2 1 3 34 34 H 1.09000 * 109.46944 * 60.00142 * 3 2 1 35 35 H 1.09005 * 109.47341 * 300.00447 * 3 2 1 36 36 H 0.96997 * 120.00055 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.50749 * 63.24281 * 17 15 13 38 38 H 1.08998 * 109.50962 * 303.10464 * 17 15 13 39 39 H 1.09001 * 109.46965 * 50.00281 * 19 18 17 40 40 H 1.08990 * 109.47268 * 290.00310 * 19 18 17 41 41 H 1.08003 * 120.00014 * 359.97438 * 21 20 19 42 42 H 1.07999 * 120.00536 * 180.23446 * 22 21 20 43 43 H 1.07997 * 119.99471 * 179.83558 * 23 22 21 44 44 H 1.07995 * 119.99902 * 179.97438 * 24 23 22 45 45 H 1.08005 * 120.00001 * 359.97127 * 25 20 19 46 46 H 1.09005 * 109.50642 * 61.31473 * 26 18 17 47 47 H 1.08993 * 109.50967 * 181.44436 * 26 18 17 48 48 H 1.09003 * 109.50657 * 296.90377 * 27 26 18 49 49 H 1.09005 * 109.50614 * 176.78080 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1911 1.3499 1.1828 6 1 5.0239 0.6681 1.2723 7 6 3.8149 2.1332 2.2669 8 7 2.7585 2.9104 2.1811 9 14 4.8105 2.0817 3.8467 10 1 5.9431 1.1348 3.6872 11 1 5.3377 3.4377 4.1440 12 1 3.9423 1.6320 4.9645 13 6 4.1784 1.5333 -1.1646 14 8 3.5754 1.7115 -2.2018 15 6 5.6806 1.4135 -1.1774 16 1 5.9796 0.5252 -0.6210 17 6 6.2980 2.6551 -0.5283 18 7 7.7632 2.5681 -0.6119 19 6 8.3973 3.7153 0.0512 20 6 9.8807 3.4741 0.1629 21 6 10.3965 2.8450 1.2804 22 6 11.7567 2.6201 1.3811 23 6 12.6021 3.0319 0.3677 24 6 12.0869 3.6657 -0.7475 25 6 10.7262 3.8871 -0.8497 26 6 8.1998 2.4612 -2.0116 27 6 7.5632 1.2216 -2.6457 28 8 6.1406 1.3089 -2.5274 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 2.4961 3.4575 2.9378 37 1 5.9956 2.7076 0.5176 38 1 5.9560 3.5478 -1.0520 39 1 7.9733 3.8389 1.0477 40 1 8.2189 4.6173 -0.5339 41 1 9.7364 2.5267 2.0738 42 1 12.1593 2.1252 2.2525 43 1 13.6651 2.8586 0.4476 44 1 12.7474 3.9878 -1.5389 45 1 10.3237 4.3823 -1.7211 46 1 7.8881 3.3508 -2.5590 47 1 9.2854 2.3722 -2.0484 48 1 7.9170 0.3276 -2.1321 49 1 7.8383 1.1698 -3.6992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078088524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:05 Heat of formation + Delta-G solvation = -61.087364 kcal Electronic energy + Delta-G solvation = -29673.560906 eV Core-core repulsion = 25793.028709 eV Total energy + Delta-G solvation = -3880.532197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.36196 -40.30941 -39.41832 -37.18608 -36.61355 -34.58864 -33.41125 -32.60479 -32.13636 -31.67808 -29.10794 -27.60067 -26.75199 -25.29384 -25.16596 -23.39097 -22.60838 -22.00592 -21.40827 -21.12345 -19.08681 -18.15914 -17.60885 -17.19227 -17.13302 -16.50360 -16.38849 -16.25041 -16.10198 -15.74412 -15.61881 -15.45060 -15.13634 -14.96976 -14.88255 -14.25161 -14.06754 -14.02709 -13.65093 -13.40492 -13.28010 -13.21083 -13.05968 -12.87658 -12.69093 -12.58022 -12.42164 -12.37823 -12.00966 -11.94291 -11.89500 -11.79761 -11.71253 -11.46023 -10.99942 -10.67022 -10.34574 -9.77200 -9.71367 -9.43888 -9.39065 -8.19099 -6.18920 0.44231 0.55199 1.41876 1.48473 1.60392 1.87687 2.20450 2.46903 2.66055 3.03516 3.13614 3.41879 3.73107 3.90753 3.92978 3.98051 4.08477 4.13523 4.20173 4.22090 4.25353 4.33868 4.35080 4.40312 4.45342 4.58864 4.61261 4.62995 4.72302 4.76821 4.80480 4.84444 4.91206 4.95490 5.00782 5.11748 5.13467 5.20986 5.24916 5.39943 5.43816 5.59357 5.66620 5.72266 5.73784 5.82922 5.96259 6.09067 6.15676 6.16509 6.46200 7.10518 7.51257 7.96199 8.74829 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.003841 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.303008 B = 7287.677853 C = 8857.371436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.121 4.121 3 C 0.097 3.903 4 N -0.444 5.444 5 C -0.346 4.346 6 H 0.094 0.906 7 C 0.014 3.986 8 N -0.894 5.894 9 Si 0.975 3.025 10 H -0.253 1.253 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.468 3.532 14 O -0.625 6.625 15 C 0.111 3.889 16 H 0.082 0.918 17 C 0.053 3.947 18 N -0.528 5.528 19 C 0.092 3.908 20 C -0.085 4.085 21 C -0.115 4.115 22 C -0.127 4.127 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.123 4.123 26 C 0.019 3.981 27 C 0.057 3.943 28 O -0.393 6.393 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.056 0.944 34 H 0.117 0.883 35 H 0.028 0.972 36 H 0.273 0.727 37 H 0.103 0.897 38 H 0.015 0.985 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.119 0.881 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.125 0.875 46 H 0.035 0.965 47 H 0.109 0.891 48 H 0.064 0.936 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.699 -0.140 0.154 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C -0.025 4.025 4 N -0.163 5.163 5 C -0.473 4.473 6 H 0.112 0.888 7 C -0.189 4.189 8 N -0.532 5.532 9 Si 0.798 3.202 10 H -0.176 1.176 11 H -0.202 1.202 12 H -0.204 1.204 13 C 0.257 3.743 14 O -0.512 6.512 15 C 0.050 3.950 16 H 0.100 0.900 17 C -0.076 4.076 18 N -0.253 5.253 19 C -0.035 4.035 20 C -0.086 4.086 21 C -0.133 4.133 22 C -0.144 4.144 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.141 4.141 26 C -0.109 4.109 27 C -0.020 4.020 28 O -0.311 6.311 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.034 0.966 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.137 0.863 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.143 0.857 46 H 0.053 0.947 47 H 0.127 0.873 48 H 0.082 0.918 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.277 -0.345 -0.126 16.281 hybrid contribution -0.311 0.893 0.450 1.047 sum 15.966 0.548 0.324 15.979 Atomic orbital electron populations 1.21595 0.93683 1.02239 1.01701 1.21688 0.97209 0.96961 1.00112 1.21847 0.81261 0.96667 1.02770 1.43570 1.05281 1.62651 1.04756 1.19670 1.15483 1.23146 0.89026 0.88800 1.26244 0.96602 0.93653 1.02375 1.69683 1.24563 1.26053 1.32893 0.85133 0.78935 0.78623 0.77525 1.17636 1.20246 1.20397 1.20699 0.89451 0.79930 0.84254 1.90498 1.71001 1.55385 1.34266 1.21464 0.91107 0.98977 0.83432 0.89989 1.22392 0.87404 0.94940 1.02826 1.62266 1.05160 1.42221 1.15637 1.21065 0.91552 0.91076 0.99772 1.19688 0.93838 0.99516 0.95533 1.21199 0.96113 0.98229 0.97809 1.21417 0.93028 1.00040 0.99962 1.21484 1.00858 0.98100 0.93749 1.21405 0.94866 0.99015 0.98858 1.21220 0.94115 1.00488 0.98294 1.22901 1.02017 0.98086 0.87878 1.22962 0.79130 0.97272 1.02601 1.88042 1.23202 1.94598 1.25308 0.90983 0.92429 0.93109 0.94840 0.92474 0.86605 0.95372 0.91672 0.87901 0.96646 0.90184 0.93777 0.86332 0.84387 0.83786 0.83879 0.85675 0.94658 0.87270 0.91788 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.91 71.98 0.71 -3.84 16 2 C -0.12 -5.14 6.24 30.59 0.19 -4.95 16 3 C 0.10 4.88 5.15 86.38 0.45 5.32 16 4 N -0.44 -22.90 2.53 -635.54 -1.61 -24.51 16 5 C -0.35 -16.88 6.56 84.04 0.55 -16.32 16 6 H 0.09 4.41 7.02 -2.91 -0.02 4.39 16 7 C 0.01 0.67 5.41 84.92 0.46 1.13 16 8 N -0.89 -45.61 10.74 21.66 0.23 -45.38 16 9 Si 0.97 37.58 29.55 68.60 2.03 39.61 16 10 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 11 H -0.28 -10.58 7.11 99.48 0.71 -9.88 16 12 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 13 C 0.47 24.68 7.03 87.66 0.62 25.29 16 14 O -0.62 -37.02 16.03 15.71 0.25 -36.77 16 15 C 0.11 4.91 2.49 29.88 0.07 4.98 16 16 H 0.08 3.52 7.38 -2.39 -0.02 3.50 16 17 C 0.05 2.12 4.72 86.31 0.41 2.53 16 18 N -0.53 -16.94 4.72 -899.81 -4.24 -21.18 16 19 C 0.09 2.59 5.12 85.56 0.44 3.03 16 20 C -0.09 -2.05 4.90 -19.87 -0.10 -2.15 16 21 C -0.11 -2.65 9.70 22.27 0.22 -2.44 16 22 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 23 C -0.12 -2.01 10.05 22.27 0.22 -1.78 16 24 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 25 C -0.12 -2.49 7.94 22.27 0.18 -2.31 16 26 C 0.02 0.53 5.28 86.31 0.46 0.99 16 27 C 0.06 1.71 7.01 72.01 0.50 2.21 16 28 O -0.39 -16.67 10.03 -130.19 -1.31 -17.98 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.12 6.07 5.16 -2.39 -0.01 6.06 16 35 H 0.03 1.49 7.23 -2.38 -0.02 1.48 16 36 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 37 H 0.10 4.41 6.13 -2.39 -0.01 4.39 16 38 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 2.33 7.98 -2.39 -0.02 2.31 16 40 H 0.04 1.21 8.06 -2.39 -0.02 1.19 16 41 H 0.12 2.77 8.06 -2.91 -0.02 2.75 16 42 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 44 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 45 H 0.13 2.28 8.00 -2.91 -0.02 2.26 16 46 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.11 2.53 6.01 -2.39 -0.01 2.52 16 48 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.12 2.93 8.14 -2.38 -0.02 2.91 16 Total: -1.00 -64.91 389.30 2.10 -62.80 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: 0.92 Total: 35.71 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 5.82 Total: 7.69 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -5.62 Total: -91.07 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -1.05 Total: -54.75 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -64.91 2.10 -62.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078088524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.716 kcal (2) G-P(sol) polarization free energy of solvation -64.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds