Wall clock time and date at job start Tue Mar 31 2020 16:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47182 * 2 1 4 4 N 1.46496 * 109.47192 * 179.97438 * 3 2 1 5 5 C 1.37102 * 120.00078 * 263.10809 * 4 3 2 6 6 H 1.08003 * 119.99948 * 147.78177 * 5 4 3 7 7 C 1.38952 * 119.99926 * 327.78182 * 5 4 3 8 8 N 1.31409 * 119.99530 * 166.10204 * 7 5 4 9 9 Si 1.86799 * 120.00277 * 346.10397 * 7 5 4 10 10 H 1.48500 * 109.46884 * 96.00378 * 9 7 5 11 11 H 1.48493 * 109.47244 * 216.00771 * 9 7 5 12 12 H 1.48504 * 109.47008 * 336.00701 * 9 7 5 13 13 C 1.34781 * 119.99940 * 83.11303 * 4 3 2 14 14 O 1.21289 * 119.99810 * 184.53723 * 13 4 3 15 15 C 1.50701 * 119.99590 * 4.53651 * 13 4 3 16 16 H 1.08998 * 109.50901 * 323.52813 * 15 13 4 17 17 C 1.53097 * 109.54182 * 83.64307 * 15 13 4 18 18 N 1.47015 * 109.25494 * 176.80307 * 17 15 13 19 19 C 1.46904 * 110.99744 * 177.60905 * 18 17 15 20 20 C 1.50704 * 109.46936 * 169.99809 * 19 18 17 21 21 C 1.38230 * 119.99833 * 269.72422 * 20 19 18 22 22 C 1.38240 * 119.99683 * 179.74534 * 21 20 19 23 23 C 1.38235 * 120.00091 * 0.53062 * 22 21 20 24 24 C 1.38239 * 119.99751 * 359.74379 * 23 22 21 25 25 C 1.38232 * 119.99717 * 90.00083 * 20 19 18 26 26 C 1.47025 * 110.78848 * 301.40476 * 18 17 15 27 27 C 1.53093 * 109.25527 * 58.55409 * 26 18 17 28 28 O 1.43015 * 109.50178 * 203.44657 * 15 13 4 29 29 H 1.09000 * 109.46735 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47422 * 299.99556 * 1 2 3 31 31 H 1.08996 * 109.47064 * 60.00039 * 1 2 3 32 32 H 1.08998 * 109.47090 * 240.00011 * 2 1 3 33 33 H 1.09001 * 109.47401 * 120.00265 * 2 1 3 34 34 H 1.09007 * 109.46542 * 60.00242 * 3 2 1 35 35 H 1.09001 * 109.47169 * 300.00407 * 3 2 1 36 36 H 0.97007 * 119.99640 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.50416 * 296.73675 * 17 15 13 38 38 H 1.08997 * 109.50898 * 56.86892 * 17 15 13 39 39 H 1.09000 * 109.46967 * 289.99562 * 19 18 17 40 40 H 1.08998 * 109.47572 * 49.99711 * 19 18 17 41 41 H 1.08004 * 120.00461 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.00072 * 180.29292 * 22 21 20 43 43 H 1.07998 * 120.00229 * 179.76989 * 23 22 21 44 44 H 1.07999 * 119.99863 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.00666 * 359.97438 * 25 20 19 46 46 H 1.09007 * 109.47256 * 298.63713 * 26 18 17 47 47 H 1.09006 * 109.54208 * 178.51394 * 26 18 17 48 48 H 1.09004 * 109.50505 * 183.26360 * 27 26 18 49 49 H 1.08993 * 109.50710 * 63.16924 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5851 1.1796 6 1 5.1453 1.0987 1.3114 7 6 3.6553 2.3555 2.2050 8 7 4.1591 2.2780 3.4162 9 14 2.2204 3.5012 1.8617 10 1 0.9486 2.8215 2.2163 11 1 2.3662 4.7347 2.6755 12 1 2.2058 3.8580 0.4203 13 6 4.1794 1.3024 -1.1579 14 8 5.3894 1.2197 -1.1490 15 6 3.4299 1.2484 -2.4642 16 1 2.4924 0.7102 -2.3240 17 6 3.1353 2.6718 -2.9447 18 7 2.4724 2.6135 -4.2557 19 6 2.1206 3.9593 -4.7280 20 6 1.6724 3.8862 -6.1650 21 6 2.5950 4.0269 -7.1847 22 6 2.1847 3.9545 -8.5028 23 6 0.8502 3.7524 -8.8012 24 6 -0.0733 3.6173 -7.7814 25 6 0.3379 3.6841 -6.4633 26 6 3.3160 1.9148 -5.2364 27 6 3.6097 0.4994 -4.7323 28 8 4.2253 0.5750 -3.4436 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9564 -0.8900 36 1 3.7860 2.8161 4.1320 37 1 2.4820 3.1699 -2.2283 38 1 4.0693 3.2267 -3.0335 39 1 1.3128 4.3597 -4.1154 40 1 2.9914 4.6104 -4.6517 41 1 3.6370 4.1896 -6.9516 42 1 2.9062 4.0597 -9.2995 43 1 0.5291 3.6995 -9.8310 44 1 -1.1160 3.4599 -8.0145 45 1 -0.3836 3.5782 -5.6666 46 1 4.2527 2.4580 -5.3624 47 1 2.7950 1.8601 -6.1923 48 1 4.2821 -0.0025 -5.4280 49 1 2.6779 -0.0611 -4.6582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078088526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:10 Heat of formation + Delta-G solvation = -23.114543 kcal Electronic energy + Delta-G solvation = -29807.993660 eV Core-core repulsion = 25929.108088 eV Total energy + Delta-G solvation = -3878.885572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.29908 -39.39341 -38.12174 -35.91801 -35.40136 -32.93807 -31.99203 -31.57733 -31.24378 -30.90228 -28.16615 -26.09161 -25.66522 -24.28157 -23.85410 -22.78647 -21.62999 -21.40357 -20.33431 -19.09732 -17.16007 -17.02604 -16.64341 -16.40487 -15.92194 -15.71362 -15.50467 -15.40071 -14.76669 -14.47797 -14.35626 -14.18734 -13.88000 -13.66975 -13.60821 -13.30094 -13.17418 -12.77950 -12.69443 -12.38858 -12.34943 -12.16809 -11.99413 -11.64027 -11.53049 -11.38739 -11.23411 -11.11223 -11.01779 -10.93308 -10.57931 -10.44980 -10.04573 -9.68889 -9.45724 -9.14168 -9.12507 -9.05390 -8.47525 -8.41266 -7.84959 -6.38053 -3.97102 1.06730 1.16667 2.97934 3.11975 3.17839 3.34058 3.53238 3.75530 4.00561 4.08451 4.46641 4.58820 4.61802 4.75974 4.86601 4.90278 4.96022 5.05483 5.10108 5.20308 5.24073 5.27416 5.29976 5.35844 5.44618 5.48063 5.49253 5.54556 5.59451 5.73631 5.75359 5.76582 5.79738 5.81335 5.90936 5.99038 6.03589 6.13867 6.20523 6.26757 6.27064 6.38983 6.48396 6.71643 6.73352 6.84265 6.85460 7.27839 7.55815 8.21978 8.48991 8.92334 9.28576 9.71186 10.73922 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015737 B = 0.003393 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.767120 B = 8249.968739 C = 8612.859651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.090 3.910 4 N -0.462 5.462 5 C -0.309 4.309 6 H 0.112 0.888 7 C 0.053 3.947 8 N -0.869 5.869 9 Si 0.891 3.109 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.268 1.268 13 C 0.473 3.527 14 O -0.544 6.544 15 C 0.081 3.919 16 H 0.080 0.920 17 C 0.031 3.969 18 N -0.528 5.528 19 C 0.090 3.910 20 C -0.079 4.079 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.099 4.099 26 C 0.014 3.986 27 C 0.061 3.939 28 O -0.356 6.356 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.274 0.726 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.043 0.957 47 H 0.089 0.911 48 H 0.098 0.902 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.743 2.506 -20.972 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C -0.033 4.033 4 N -0.185 5.185 5 C -0.436 4.436 6 H 0.129 0.871 7 C -0.152 4.152 8 N -0.506 5.506 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.219 1.219 12 H -0.193 1.193 13 C 0.259 3.741 14 O -0.423 6.423 15 C 0.019 3.981 16 H 0.098 0.902 17 C -0.097 4.097 18 N -0.253 5.253 19 C -0.037 4.037 20 C -0.080 4.080 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.117 4.117 26 C -0.114 4.114 27 C -0.016 4.016 28 O -0.273 6.273 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.142 0.858 46 H 0.061 0.939 47 H 0.107 0.893 48 H 0.116 0.884 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.331 2.184 -20.632 23.640 hybrid contribution -0.438 1.264 -0.192 1.352 sum -11.769 3.448 -20.824 24.167 Atomic orbital electron populations 1.21733 0.95872 1.01507 1.01632 1.21956 0.95269 0.97493 1.03158 1.21995 0.83229 0.96960 1.01094 1.43690 1.03553 1.65142 1.06096 1.19173 1.06457 1.29943 0.88063 0.87080 1.25330 0.98129 0.96695 0.95008 1.69669 1.41784 1.39108 1.00083 0.86771 0.81835 0.80643 0.78642 1.20239 1.21921 1.19346 1.19583 0.87803 0.83218 0.83462 1.90579 1.13798 1.51749 1.86217 1.22109 0.94596 0.92249 0.89096 0.90233 1.22675 0.98666 0.97466 0.90899 1.62380 1.43390 1.16966 1.02572 1.21139 1.00601 0.90000 0.91965 1.19770 0.93809 0.99711 0.94679 1.21134 0.99325 1.00101 0.92659 1.21118 0.96086 1.00474 0.96305 1.21157 0.93429 1.00263 0.99190 1.21168 0.99606 1.00375 0.92842 1.21071 0.95364 0.98689 0.96593 1.22922 0.96009 0.96007 0.96430 1.22685 0.98439 0.95064 0.85432 1.88146 1.43667 1.76943 1.18582 0.92643 0.92751 0.92859 0.91959 0.90501 0.91519 0.91676 0.91535 0.89127 0.92912 0.89446 0.93535 0.86265 0.86126 0.86250 0.86087 0.85757 0.93885 0.89267 0.88442 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.14 -2.42 5.99 -26.73 -0.16 -2.58 16 3 C 0.09 1.81 3.25 -4.04 -0.01 1.80 16 4 N -0.46 -11.25 2.35 -114.81 -0.27 -11.52 16 5 C -0.31 -8.79 9.60 -14.93 -0.14 -8.93 16 6 H 0.11 3.58 7.76 -52.48 -0.41 3.17 16 7 C 0.05 1.46 5.43 -17.47 -0.09 1.37 16 8 N -0.87 -25.19 13.96 55.50 0.77 -24.42 16 9 Si 0.89 20.41 24.51 -169.99 -4.17 16.24 16 10 H -0.27 -5.87 6.87 56.52 0.39 -5.48 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -5.82 6.63 56.52 0.37 -5.45 16 13 C 0.47 11.47 6.81 -10.98 -0.07 11.39 16 14 O -0.54 -15.60 16.44 -13.13 -0.22 -15.81 16 15 C 0.08 1.54 2.37 -27.83 -0.07 1.48 16 16 H 0.08 1.38 5.51 -51.93 -0.29 1.10 16 17 C 0.03 0.52 4.73 -3.71 -0.02 0.50 16 18 N -0.53 -7.08 4.87 -235.73 -1.15 -8.22 16 19 C 0.09 1.02 5.44 -4.97 -0.03 1.00 16 20 C -0.08 -0.81 4.13 -104.63 -0.43 -1.24 16 21 C -0.11 -1.08 7.88 -39.58 -0.31 -1.39 16 22 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 23 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 24 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 25 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 26 C 0.01 0.18 4.66 -3.71 -0.02 0.16 16 27 C 0.06 0.84 7.01 37.21 0.26 1.10 16 28 O -0.36 -6.78 10.11 -53.91 -0.55 -7.33 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.03 6.86 -51.93 -0.36 0.67 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.07 1.42 2.28 -51.93 -0.12 1.30 16 35 H 0.07 1.14 5.46 -51.93 -0.28 0.86 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.09 1.48 6.85 -51.93 -0.36 1.12 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 40 H 0.05 0.54 8.02 -51.93 -0.42 0.12 16 41 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.04 0.57 8.14 -51.92 -0.42 0.14 16 47 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 48 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -33.05 380.40 -9.77 -42.82 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.62 Total: 5.05 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.31 Total: -2.55 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.64 Total: -44.16 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.76 Total: -23.14 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.17 Total: 16.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.05 -9.77 -42.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078088526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.708 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds