Wall clock time and date at job start Tue Mar 31 2020 16:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47182 * 2 1 4 4 N 1.46496 * 109.47192 * 179.97438 * 3 2 1 5 5 C 1.37102 * 120.00078 * 263.10809 * 4 3 2 6 6 H 1.08003 * 119.99948 * 147.78177 * 5 4 3 7 7 C 1.38952 * 119.99926 * 327.78182 * 5 4 3 8 8 N 1.31409 * 119.99530 * 166.10204 * 7 5 4 9 9 Si 1.86799 * 120.00277 * 346.10397 * 7 5 4 10 10 H 1.48500 * 109.46884 * 96.00378 * 9 7 5 11 11 H 1.48493 * 109.47244 * 216.00771 * 9 7 5 12 12 H 1.48504 * 109.47008 * 336.00701 * 9 7 5 13 13 C 1.34781 * 119.99940 * 83.11303 * 4 3 2 14 14 O 1.21289 * 119.99810 * 184.53723 * 13 4 3 15 15 C 1.50701 * 119.99590 * 4.53651 * 13 4 3 16 16 H 1.08998 * 109.50901 * 323.52813 * 15 13 4 17 17 C 1.53097 * 109.54182 * 83.64307 * 15 13 4 18 18 N 1.47015 * 109.25494 * 176.80307 * 17 15 13 19 19 C 1.46904 * 110.99744 * 177.60905 * 18 17 15 20 20 C 1.50704 * 109.46936 * 169.99809 * 19 18 17 21 21 C 1.38230 * 119.99833 * 269.72422 * 20 19 18 22 22 C 1.38240 * 119.99683 * 179.74534 * 21 20 19 23 23 C 1.38235 * 120.00091 * 0.53062 * 22 21 20 24 24 C 1.38239 * 119.99751 * 359.74379 * 23 22 21 25 25 C 1.38232 * 119.99717 * 90.00083 * 20 19 18 26 26 C 1.47025 * 110.78848 * 301.40476 * 18 17 15 27 27 C 1.53093 * 109.25527 * 58.55409 * 26 18 17 28 28 O 1.43015 * 109.50178 * 203.44657 * 15 13 4 29 29 H 1.09000 * 109.46735 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47422 * 299.99556 * 1 2 3 31 31 H 1.08996 * 109.47064 * 60.00039 * 1 2 3 32 32 H 1.08998 * 109.47090 * 240.00011 * 2 1 3 33 33 H 1.09001 * 109.47401 * 120.00265 * 2 1 3 34 34 H 1.09007 * 109.46542 * 60.00242 * 3 2 1 35 35 H 1.09001 * 109.47169 * 300.00407 * 3 2 1 36 36 H 0.97007 * 119.99640 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.50416 * 296.73675 * 17 15 13 38 38 H 1.08997 * 109.50898 * 56.86892 * 17 15 13 39 39 H 1.09000 * 109.46967 * 289.99562 * 19 18 17 40 40 H 1.08998 * 109.47572 * 49.99711 * 19 18 17 41 41 H 1.08004 * 120.00461 * 359.97438 * 21 20 19 42 42 H 1.07998 * 120.00072 * 180.29292 * 22 21 20 43 43 H 1.07998 * 120.00229 * 179.76989 * 23 22 21 44 44 H 1.07999 * 119.99863 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.00666 * 359.97438 * 25 20 19 46 46 H 1.09007 * 109.47256 * 298.63713 * 26 18 17 47 47 H 1.09006 * 109.54208 * 178.51394 * 26 18 17 48 48 H 1.09004 * 109.50505 * 183.26360 * 27 26 18 49 49 H 1.08993 * 109.50710 * 63.16924 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5851 1.1796 6 1 5.1453 1.0987 1.3114 7 6 3.6553 2.3555 2.2050 8 7 4.1591 2.2780 3.4162 9 14 2.2204 3.5012 1.8617 10 1 0.9486 2.8215 2.2163 11 1 2.3662 4.7347 2.6755 12 1 2.2058 3.8580 0.4203 13 6 4.1794 1.3024 -1.1579 14 8 5.3894 1.2197 -1.1490 15 6 3.4299 1.2484 -2.4642 16 1 2.4924 0.7102 -2.3240 17 6 3.1353 2.6718 -2.9447 18 7 2.4724 2.6135 -4.2557 19 6 2.1206 3.9593 -4.7280 20 6 1.6724 3.8862 -6.1650 21 6 2.5950 4.0269 -7.1847 22 6 2.1847 3.9545 -8.5028 23 6 0.8502 3.7524 -8.8012 24 6 -0.0733 3.6173 -7.7814 25 6 0.3379 3.6841 -6.4633 26 6 3.3160 1.9148 -5.2364 27 6 3.6097 0.4994 -4.7323 28 8 4.2253 0.5750 -3.4436 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9564 -0.8900 36 1 3.7860 2.8161 4.1320 37 1 2.4820 3.1699 -2.2283 38 1 4.0693 3.2267 -3.0335 39 1 1.3128 4.3597 -4.1154 40 1 2.9914 4.6104 -4.6517 41 1 3.6370 4.1896 -6.9516 42 1 2.9062 4.0597 -9.2995 43 1 0.5291 3.6995 -9.8310 44 1 -1.1160 3.4599 -8.0145 45 1 -0.3836 3.5782 -5.6666 46 1 4.2527 2.4580 -5.3624 47 1 2.7950 1.8601 -6.1923 48 1 4.2821 -0.0025 -5.4280 49 1 2.6779 -0.0611 -4.6582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078088526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:09 Heat of formation + Delta-G solvation = -45.158398 kcal Electronic energy + Delta-G solvation = -29808.949554 eV Core-core repulsion = 25929.108088 eV Total energy + Delta-G solvation = -3879.841465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61694 -40.49385 -39.47731 -37.49595 -36.80232 -34.78556 -33.43043 -32.85807 -32.26662 -31.71234 -29.31931 -27.64850 -27.21087 -25.39938 -25.29925 -23.44997 -22.94595 -22.36160 -21.40168 -20.85027 -19.07511 -18.44323 -17.92861 -17.59618 -17.20998 -17.11789 -16.54271 -16.37924 -15.92978 -15.80917 -15.64221 -15.47280 -15.27332 -15.06565 -14.86058 -14.51559 -14.23197 -14.13682 -14.02195 -13.65125 -13.59968 -13.44719 -13.14868 -13.08873 -12.81033 -12.55034 -12.53587 -12.35947 -12.13660 -11.89300 -11.82193 -11.79403 -11.77154 -11.46790 -11.01297 -10.74926 -10.40916 -9.86697 -9.79598 -9.76762 -9.42599 -8.52154 -6.18719 0.40904 0.54166 1.16024 1.27060 1.39939 1.67502 2.12115 2.16497 2.60109 2.88638 3.04095 3.13324 3.59445 3.66699 3.74177 3.85177 3.88179 3.94861 3.98833 4.08408 4.16304 4.19479 4.23391 4.31735 4.34347 4.40658 4.45856 4.52115 4.58544 4.62293 4.64087 4.70874 4.77899 4.79982 4.88345 4.94042 5.11760 5.14713 5.20392 5.24736 5.38810 5.50172 5.57018 5.66517 5.69798 5.72813 5.85308 5.94597 6.05535 6.14284 6.49091 6.84073 7.18987 7.73665 8.64770 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015737 B = 0.003393 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.767120 B = 8249.968739 C = 8612.859651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.083 3.917 4 N -0.467 5.467 5 C -0.331 4.331 6 H 0.046 0.954 7 C 0.004 3.996 8 N -0.916 5.916 9 Si 0.960 3.040 10 H -0.239 1.239 11 H -0.293 1.293 12 H -0.246 1.246 13 C 0.463 3.537 14 O -0.606 6.606 15 C 0.096 3.904 16 H 0.104 0.896 17 C 0.039 3.961 18 N -0.519 5.519 19 C 0.090 3.910 20 C -0.092 4.092 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.106 4.106 26 C 0.020 3.980 27 C 0.054 3.946 28 O -0.391 6.391 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.281 0.719 37 H 0.098 0.902 38 H 0.029 0.971 39 H 0.098 0.902 40 H 0.040 0.960 41 H 0.117 0.883 42 H 0.137 0.863 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.132 0.868 46 H 0.033 0.967 47 H 0.110 0.890 48 H 0.118 0.882 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.218 3.356 -24.118 29.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C -0.038 4.038 4 N -0.189 5.189 5 C -0.459 4.459 6 H 0.064 0.936 7 C -0.197 4.197 8 N -0.554 5.554 9 Si 0.784 3.216 10 H -0.165 1.165 11 H -0.220 1.220 12 H -0.170 1.170 13 C 0.252 3.748 14 O -0.489 6.489 15 C 0.035 3.965 16 H 0.121 0.879 17 C -0.090 4.090 18 N -0.244 5.244 19 C -0.037 4.037 20 C -0.093 4.093 21 C -0.144 4.144 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.125 4.125 26 C -0.108 4.108 27 C -0.022 4.022 28 O -0.310 6.310 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.047 0.953 39 H 0.116 0.884 40 H 0.058 0.942 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.150 0.850 46 H 0.051 0.949 47 H 0.128 0.872 48 H 0.136 0.864 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.848 3.014 -23.798 28.751 hybrid contribution 1.071 0.924 0.719 1.587 sum -14.777 3.938 -23.079 27.686 Atomic orbital electron populations 1.21711 0.92236 1.03253 1.02835 1.21924 0.98292 0.95219 1.02149 1.22309 0.80042 0.99274 1.02201 1.43770 1.05560 1.64684 1.04848 1.18733 1.05353 1.31189 0.90660 0.93624 1.26229 1.01838 0.97683 0.93940 1.69811 1.44141 1.40092 1.01373 0.85672 0.78621 0.77566 0.79700 1.16489 1.22048 1.16983 1.20618 0.87533 0.81358 0.85318 1.90532 1.16749 1.54220 1.87430 1.21853 0.93901 0.94297 0.86458 0.87889 1.22501 0.98114 0.95284 0.93065 1.62416 1.42324 1.18357 1.01309 1.21189 1.00662 0.88603 0.93214 1.19686 0.94453 1.01294 0.93826 1.21221 0.99265 1.00641 0.93257 1.21369 0.96900 0.99998 0.96243 1.21490 0.93151 0.99113 1.00383 1.21458 1.00794 0.99653 0.92440 1.21233 0.95080 0.98690 0.97487 1.22910 0.95823 0.95080 0.96962 1.23030 0.99569 0.96243 0.83343 1.88103 1.45129 1.77148 1.20573 0.90765 0.92781 0.90375 0.91378 0.93323 0.92255 0.88238 0.90898 0.88363 0.95280 0.88393 0.94206 0.86541 0.84536 0.84068 0.84085 0.84997 0.94873 0.87188 0.86371 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.91 71.98 0.71 -2.58 16 2 C -0.14 -4.48 5.99 30.59 0.18 -4.30 16 3 C 0.08 3.17 3.25 86.38 0.28 3.45 16 4 N -0.47 -23.31 2.35 -635.53 -1.49 -24.80 16 5 C -0.33 -20.04 9.60 84.04 0.81 -19.24 16 6 H 0.05 3.27 7.76 -2.91 -0.02 3.25 16 7 C 0.00 0.24 5.43 84.93 0.46 0.70 16 8 N -0.92 -55.48 13.96 21.66 0.30 -55.17 16 9 Si 0.96 41.34 24.51 68.60 1.68 43.02 16 10 H -0.24 -8.99 6.87 99.48 0.68 -8.30 16 11 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.25 -9.64 6.63 99.48 0.66 -8.98 16 13 C 0.46 23.27 6.81 87.66 0.60 23.86 16 14 O -0.61 -37.17 16.44 14.80 0.24 -36.92 16 15 C 0.10 3.59 2.37 29.88 0.07 3.66 16 16 H 0.10 3.32 5.51 -2.39 -0.01 3.30 16 17 C 0.04 1.24 4.73 86.31 0.41 1.65 16 18 N -0.52 -12.61 4.87 -899.73 -4.38 -16.99 16 19 C 0.09 1.84 5.44 85.56 0.47 2.30 16 20 C -0.09 -1.65 4.13 -19.87 -0.08 -1.73 16 21 C -0.13 -2.11 7.88 22.27 0.18 -1.94 16 22 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 23 C -0.12 -1.53 10.05 22.27 0.22 -1.31 16 24 C -0.13 -1.64 10.05 22.27 0.22 -1.41 16 25 C -0.11 -1.66 9.70 22.27 0.22 -1.44 16 26 C 0.02 0.46 4.66 86.31 0.40 0.86 16 27 C 0.05 1.38 7.01 72.01 0.50 1.88 16 28 O -0.39 -14.79 10.11 -131.12 -1.33 -16.11 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 2.12 6.86 -2.39 -0.02 2.10 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 2.36 2.28 -2.38 -0.01 2.35 16 35 H 0.10 3.10 5.46 -2.39 -0.01 3.08 16 36 H 0.28 15.52 8.31 -92.70 -0.77 14.75 16 37 H 0.10 2.94 6.85 -2.39 -0.02 2.92 16 38 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.10 1.79 8.09 -2.39 -0.02 1.77 16 40 H 0.04 0.87 8.02 -2.39 -0.02 0.85 16 41 H 0.12 1.96 8.06 -2.91 -0.02 1.93 16 42 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 43 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 44 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 45 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 46 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.11 2.13 5.93 -2.38 -0.01 2.12 16 48 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 49 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -79.41 380.40 1.77 -77.64 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.87 Total: 26.46 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 5.87 Total: 2.89 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -5.57 Total: -96.97 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -1.08 Total: -53.04 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.68 Total: 43.02 kcal Total: -79.41 1.77 -77.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078088526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.482 kcal (2) G-P(sol) polarization free energy of solvation -79.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds