Wall clock time and date at job start Tue Mar 31 2020 16:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47175 * 2 1 4 4 N 1.46896 * 109.47146 * 120.00578 * 2 1 3 5 5 C 1.46903 * 110.99705 * 299.29666 * 4 2 1 6 6 C 1.53238 * 109.33914 * 172.74743 * 5 4 2 7 7 N 1.47083 * 108.52109 * 53.83520 * 6 5 4 8 8 C 1.34776 * 120.88452 * 128.79078 * 7 6 5 9 9 O 1.21278 * 120.00076 * 180.02562 * 8 7 6 10 10 C 1.50698 * 119.99698 * 0.02735 * 8 7 6 11 11 C 1.50701 * 109.46924 * 180.02562 * 10 8 7 12 12 C 1.38321 * 119.96962 * 90.00002 * 11 10 8 13 13 C 1.38274 * 120.14074 * 179.97438 * 12 11 10 14 14 C 1.38128 * 120.06954 * 359.97438 * 13 12 11 15 15 C 1.38853 * 119.92520 * 0.02562 * 14 13 12 16 16 O 1.35756 * 120.06221 * 180.02562 * 15 14 13 17 17 C 1.34825 * 117.00499 * 354.46917 * 16 15 14 18 18 H 1.08001 * 119.99925 * 5.05754 * 17 16 15 19 19 C 1.38655 * 120.00251 * 185.05692 * 17 16 15 20 20 N 1.31552 * 120.00060 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00032 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46908 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47357 * 119.99643 * 21 19 17 24 24 H 1.48498 * 109.46968 * 240.00108 * 21 19 17 25 25 C 1.38077 * 119.96228 * 269.71863 * 11 10 8 26 26 C 1.47076 * 118.23465 * 308.81506 * 7 6 5 27 27 C 1.46900 * 110.99993 * 175.00237 * 4 2 1 28 28 H 1.08996 * 109.47050 * 299.99361 * 1 2 3 29 29 H 1.08999 * 109.47126 * 60.00327 * 1 2 3 30 30 H 1.09007 * 109.46956 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46793 * 240.00113 * 2 1 3 32 32 H 1.08994 * 109.47344 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46981 * 300.00621 * 3 2 1 34 34 H 1.09000 * 109.46403 * 59.99910 * 3 2 1 35 35 H 1.08996 * 109.49511 * 292.71028 * 5 4 2 36 36 H 1.09004 * 109.49019 * 52.79584 * 5 4 2 37 37 H 1.08997 * 109.63220 * 294.12446 * 6 5 4 38 38 H 1.09000 * 109.63008 * 173.53969 * 6 5 4 39 39 H 1.09000 * 109.47141 * 299.99426 * 10 8 7 40 40 H 1.08995 * 109.47710 * 59.99288 * 10 8 7 41 41 H 1.08007 * 119.92905 * 0.02562 * 12 11 10 42 42 H 1.07998 * 119.96567 * 179.97438 * 13 12 11 43 43 H 1.07996 * 120.03396 * 180.02562 * 14 13 12 44 44 H 0.97001 * 120.00040 * 179.97438 * 20 19 17 45 45 H 1.08001 * 120.03576 * 0.02562 * 25 11 10 46 46 H 1.09007 * 109.63031 * 291.47160 * 26 7 6 47 47 H 1.09004 * 109.62864 * 170.89484 * 26 7 6 48 48 H 1.08998 * 109.49494 * 307.20769 * 27 4 2 49 49 H 1.09003 * 109.49331 * 67.28952 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.5624 -0.0169 2.4210 6 6 1.9379 -0.8649 3.6408 7 7 3.3807 -1.1458 3.5884 8 6 4.1717 -0.9037 4.6525 9 8 5.3595 -1.1408 4.5915 10 6 3.5801 -0.3384 5.9179 11 6 4.6679 -0.1624 6.9460 12 6 5.3672 1.0290 7.0149 13 6 6.3656 1.1946 7.9571 14 6 6.6673 0.1701 8.8331 15 6 5.9670 -1.0271 8.7664 16 8 6.2608 -2.0356 9.6263 17 6 7.3176 -1.8548 10.4438 18 1 7.8372 -0.9081 10.4533 19 6 7.7374 -2.8843 11.2723 20 7 7.1043 -4.0374 11.2612 21 14 9.2012 -2.6335 12.4054 22 1 9.7334 -1.2583 12.2294 23 1 8.7743 -2.8229 13.8149 24 1 10.2600 -3.6199 12.0719 25 6 4.9614 -1.1885 7.8219 26 6 3.9374 -1.6973 2.3438 27 6 3.4832 -0.8165 1.1750 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9562 0.8900 35 1 2.0395 0.9602 2.4965 36 1 0.4802 0.1081 2.3841 37 1 1.3815 -1.8020 3.6206 38 1 1.7045 -0.3169 4.5536 39 1 3.1222 0.6276 5.7050 40 1 2.8234 -1.0221 6.3024 41 1 5.1323 1.8321 6.3319 42 1 6.9101 2.1258 8.0082 43 1 7.4469 0.3001 9.5691 44 1 7.3982 -4.7577 11.8405 45 1 4.4122 -2.1171 7.7703 46 1 3.5733 -2.7145 2.1989 47 1 5.0261 -1.6996 2.3991 48 1 3.7942 -1.2714 0.2346 49 1 3.9336 0.1718 1.2679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089705814.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:10 Heat of formation + Delta-G solvation = -25.050423 kcal Electronic energy + Delta-G solvation = -28320.906910 eV Core-core repulsion = 24441.937392 eV Total energy + Delta-G solvation = -3878.969518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.47058 -39.16202 -38.48529 -36.45861 -35.55732 -32.67958 -32.20202 -31.58351 -31.21516 -29.15755 -27.78500 -27.52762 -26.24412 -25.16485 -24.02898 -22.37137 -21.57579 -20.94898 -20.21566 -18.75856 -17.56644 -17.24719 -16.90310 -16.26973 -15.70798 -15.60251 -15.37689 -15.05214 -14.89940 -14.53310 -14.37977 -14.30251 -13.79987 -13.66181 -13.48982 -13.18668 -12.97043 -12.80289 -12.70032 -12.42473 -12.33341 -12.20841 -11.96312 -11.75764 -11.68541 -11.47784 -11.35426 -11.25005 -11.19808 -10.96659 -10.79460 -10.68923 -10.55123 -10.37688 -9.64244 -9.26802 -8.94250 -8.77971 -8.50163 -7.99676 -7.15033 -6.38100 -3.96883 2.15174 2.45583 2.78339 2.94944 3.16630 3.18425 3.23661 3.48992 4.02080 4.39133 4.40751 4.55138 4.65770 4.70386 4.81424 4.88833 4.91377 4.96683 5.04233 5.08622 5.16389 5.18561 5.21749 5.26268 5.35080 5.37236 5.45545 5.47258 5.52176 5.57770 5.66582 5.72951 5.74589 5.79110 5.81141 5.88864 5.99062 6.23941 6.38804 6.41222 6.66250 6.67979 6.72842 6.98361 7.14026 7.33350 7.37837 7.43566 7.50856 7.89485 8.07247 8.31632 9.07837 9.79191 10.80366 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.028711 B = 0.002119 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.987593 B =13213.306204 C =13515.389196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 C -0.188 4.188 4 N -0.531 5.531 5 C 0.034 3.966 6 C 0.112 3.888 7 N -0.623 5.623 8 C 0.517 3.483 9 O -0.518 6.518 10 C -0.092 4.092 11 C -0.033 4.033 12 C -0.197 4.197 13 C -0.075 4.075 14 C -0.231 4.231 15 C 0.155 3.845 16 O -0.180 6.180 17 C -0.389 4.389 18 H 0.092 0.908 19 C 0.037 3.963 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.174 4.174 26 C 0.117 3.883 27 C 0.041 3.959 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.268 0.732 45 H 0.114 0.886 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.012 9.687 -21.180 27.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.255 5.255 5 C -0.095 4.095 6 C -0.012 4.012 7 N -0.359 5.359 8 C 0.305 3.695 9 O -0.392 6.392 10 C -0.132 4.132 11 C -0.033 4.033 12 C -0.216 4.216 13 C -0.093 4.093 14 C -0.250 4.250 15 C 0.102 3.898 16 O -0.084 6.084 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.500 5.500 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.193 4.193 26 C -0.006 4.006 27 C -0.088 4.088 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.078 0.922 45 H 0.132 0.868 46 H 0.090 0.910 47 H 0.114 0.886 48 H 0.103 0.897 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.622 8.628 -21.024 26.496 hybrid contribution 1.059 1.021 0.450 1.539 sum -12.563 9.649 -20.574 25.966 Atomic orbital electron populations 1.21882 0.94132 1.02565 1.01729 1.21722 0.95879 0.92430 0.93232 1.22492 1.01625 0.98112 1.02460 1.62195 1.10643 1.50903 1.01772 1.22590 1.01196 0.95865 0.89840 1.21839 0.80962 1.00290 0.98097 1.48204 1.08444 1.65545 1.13709 1.20770 0.86671 0.77691 0.84323 1.90750 1.15409 1.50754 1.82319 1.20613 0.98232 1.02339 0.91990 1.18667 0.96082 0.93992 0.94581 1.20326 1.01190 0.97511 1.02543 1.20670 0.96312 0.97547 0.94779 1.21171 1.05194 0.94490 1.04175 1.19270 0.92909 0.88336 0.89326 1.83975 1.45215 1.36340 1.42864 1.21362 1.06973 1.00606 1.17648 0.89088 1.25278 0.98866 0.94464 0.98015 1.70051 1.39303 1.03077 1.37541 0.85652 0.79849 0.78722 0.79220 1.19138 1.20210 1.20195 1.19939 1.01802 0.99347 0.98209 1.21626 1.00226 0.96726 0.82025 1.22505 0.87563 0.99418 0.99274 0.92441 0.92249 0.91689 0.89881 0.92485 0.92019 0.92294 0.93972 0.89162 0.90540 0.89130 0.88608 0.88280 0.88091 0.87524 0.85623 0.92178 0.86837 0.90964 0.88650 0.89710 0.94076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.00 37.16 0.33 -0.42 16 2 C 0.08 0.47 2.96 -67.71 -0.20 0.27 16 3 C -0.19 -1.15 8.51 37.16 0.32 -0.83 16 4 N -0.53 -4.05 4.62 -226.34 -1.04 -5.09 16 5 C 0.03 0.24 4.76 -3.70 -0.02 0.22 16 6 C 0.11 0.92 6.50 -3.60 -0.02 0.89 16 7 N -0.62 -7.28 3.01 -172.46 -0.52 -7.80 16 8 C 0.52 7.95 7.70 -10.99 -0.08 7.87 16 9 O -0.52 -10.51 15.49 5.56 0.09 -10.42 16 10 C -0.09 -1.28 4.20 -29.04 -0.12 -1.40 16 11 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 12 C -0.20 -3.66 9.70 -39.54 -0.38 -4.04 16 13 C -0.07 -1.48 10.04 -39.61 -0.40 -1.87 16 14 C -0.23 -5.33 9.17 -39.39 -0.36 -5.69 16 15 C 0.15 3.96 6.65 -39.11 -0.26 3.70 16 16 O -0.18 -5.35 9.76 0.04 0.00 -5.35 16 17 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 18 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -26.05 13.67 55.48 0.76 -25.29 16 21 Si 0.94 21.17 29.55 -169.99 -5.02 16.15 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 C -0.17 -3.90 9.64 -39.40 -0.38 -4.28 16 26 C 0.12 1.26 6.60 -3.61 -0.02 1.24 16 27 C 0.04 0.35 5.14 -3.70 -0.02 0.33 16 28 H 0.06 0.29 6.27 -51.93 -0.33 -0.04 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 31 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 32 H 0.06 0.39 6.69 -51.93 -0.35 0.05 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 35 H 0.04 0.33 6.71 -51.93 -0.35 -0.02 16 36 H 0.09 0.51 5.97 -51.93 -0.31 0.20 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.61 6.02 -51.93 -0.31 0.30 16 39 H 0.10 1.04 7.60 -51.93 -0.39 0.64 16 40 H 0.10 1.19 7.94 -51.93 -0.41 0.78 16 41 H 0.10 1.60 8.06 -52.48 -0.42 1.17 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 46 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 47 H 0.10 1.20 7.06 -51.93 -0.37 0.84 16 48 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 49 H 0.04 0.39 6.81 -51.93 -0.35 0.03 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -34.90 385.10 -9.26 -44.16 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.43 Total: 2.96 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -1.88 Total: -15.11 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.81 Total: -38.18 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.09 Total: -15.78 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.90 -9.26 -44.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089705814.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.106 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds