Wall clock time and date at job start Tue Mar 31 2020 16:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47175 * 2 1 4 4 N 1.46896 * 109.47146 * 120.00578 * 2 1 3 5 5 C 1.46903 * 110.99705 * 299.29666 * 4 2 1 6 6 C 1.53238 * 109.33914 * 172.74743 * 5 4 2 7 7 N 1.47083 * 108.52109 * 53.83520 * 6 5 4 8 8 C 1.34776 * 120.88452 * 128.79078 * 7 6 5 9 9 O 1.21278 * 120.00076 * 180.02562 * 8 7 6 10 10 C 1.50698 * 119.99698 * 0.02735 * 8 7 6 11 11 C 1.50701 * 109.46924 * 180.02562 * 10 8 7 12 12 C 1.38321 * 119.96962 * 90.00002 * 11 10 8 13 13 C 1.38274 * 120.14074 * 179.97438 * 12 11 10 14 14 C 1.38128 * 120.06954 * 359.97438 * 13 12 11 15 15 C 1.38853 * 119.92520 * 0.02562 * 14 13 12 16 16 O 1.35756 * 120.06221 * 180.02562 * 15 14 13 17 17 C 1.34825 * 117.00499 * 354.46917 * 16 15 14 18 18 H 1.08001 * 119.99925 * 5.05754 * 17 16 15 19 19 C 1.38655 * 120.00251 * 185.05692 * 17 16 15 20 20 N 1.31552 * 120.00060 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00032 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46908 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47357 * 119.99643 * 21 19 17 24 24 H 1.48498 * 109.46968 * 240.00108 * 21 19 17 25 25 C 1.38077 * 119.96228 * 269.71863 * 11 10 8 26 26 C 1.47076 * 118.23465 * 308.81506 * 7 6 5 27 27 C 1.46900 * 110.99993 * 175.00237 * 4 2 1 28 28 H 1.08996 * 109.47050 * 299.99361 * 1 2 3 29 29 H 1.08999 * 109.47126 * 60.00327 * 1 2 3 30 30 H 1.09007 * 109.46956 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46793 * 240.00113 * 2 1 3 32 32 H 1.08994 * 109.47344 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46981 * 300.00621 * 3 2 1 34 34 H 1.09000 * 109.46403 * 59.99910 * 3 2 1 35 35 H 1.08996 * 109.49511 * 292.71028 * 5 4 2 36 36 H 1.09004 * 109.49019 * 52.79584 * 5 4 2 37 37 H 1.08997 * 109.63220 * 294.12446 * 6 5 4 38 38 H 1.09000 * 109.63008 * 173.53969 * 6 5 4 39 39 H 1.09000 * 109.47141 * 299.99426 * 10 8 7 40 40 H 1.08995 * 109.47710 * 59.99288 * 10 8 7 41 41 H 1.08007 * 119.92905 * 0.02562 * 12 11 10 42 42 H 1.07998 * 119.96567 * 179.97438 * 13 12 11 43 43 H 1.07996 * 120.03396 * 180.02562 * 14 13 12 44 44 H 0.97001 * 120.00040 * 179.97438 * 20 19 17 45 45 H 1.08001 * 120.03576 * 0.02562 * 25 11 10 46 46 H 1.09007 * 109.63031 * 291.47160 * 26 7 6 47 47 H 1.09004 * 109.62864 * 170.89484 * 26 7 6 48 48 H 1.08998 * 109.49494 * 307.20769 * 27 4 2 49 49 H 1.09003 * 109.49331 * 67.28952 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.5624 -0.0169 2.4210 6 6 1.9379 -0.8649 3.6408 7 7 3.3807 -1.1458 3.5884 8 6 4.1717 -0.9037 4.6525 9 8 5.3595 -1.1408 4.5915 10 6 3.5801 -0.3384 5.9179 11 6 4.6679 -0.1624 6.9460 12 6 5.3672 1.0290 7.0149 13 6 6.3656 1.1946 7.9571 14 6 6.6673 0.1701 8.8331 15 6 5.9670 -1.0271 8.7664 16 8 6.2608 -2.0356 9.6263 17 6 7.3176 -1.8548 10.4438 18 1 7.8372 -0.9081 10.4533 19 6 7.7374 -2.8843 11.2723 20 7 7.1043 -4.0374 11.2612 21 14 9.2012 -2.6335 12.4054 22 1 9.7334 -1.2583 12.2294 23 1 8.7743 -2.8229 13.8149 24 1 10.2600 -3.6199 12.0719 25 6 4.9614 -1.1885 7.8219 26 6 3.9374 -1.6973 2.3438 27 6 3.4832 -0.8165 1.1750 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9562 0.8900 35 1 2.0395 0.9602 2.4965 36 1 0.4802 0.1081 2.3841 37 1 1.3815 -1.8020 3.6206 38 1 1.7045 -0.3169 4.5536 39 1 3.1222 0.6276 5.7050 40 1 2.8234 -1.0221 6.3024 41 1 5.1323 1.8321 6.3319 42 1 6.9101 2.1258 8.0082 43 1 7.4469 0.3001 9.5691 44 1 7.3982 -4.7577 11.8405 45 1 4.4122 -2.1171 7.7703 46 1 3.5733 -2.7145 2.1989 47 1 5.0261 -1.6996 2.3991 48 1 3.7942 -1.2714 0.2346 49 1 3.9336 0.1718 1.2679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089705814.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:09 Heat of formation + Delta-G solvation = -48.545533 kcal Electronic energy + Delta-G solvation = -28321.925734 eV Core-core repulsion = 24441.937392 eV Total energy + Delta-G solvation = -3879.988342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47888 -40.68318 -39.62231 -38.18258 -36.48151 -34.36137 -33.75402 -32.57051 -31.95309 -30.88564 -28.91957 -28.08285 -27.46010 -26.97905 -24.74393 -23.45503 -23.17046 -22.31908 -21.08472 -19.79000 -19.34137 -18.74015 -18.20857 -17.10437 -16.85999 -16.71662 -16.51053 -16.13948 -16.09322 -15.94710 -15.59278 -15.49900 -15.16671 -14.91520 -14.67693 -14.37334 -14.25211 -13.99199 -13.67419 -13.56301 -13.37400 -13.16221 -12.99205 -12.86838 -12.72818 -12.62318 -12.51550 -12.31515 -12.23612 -12.20756 -12.08565 -11.90238 -11.87909 -11.48556 -11.20843 -10.90808 -10.79049 -9.81043 -9.64257 -9.19606 -8.98473 -8.47565 -6.15995 0.51018 0.74788 1.33312 1.42429 1.52342 1.62495 1.97758 2.17230 2.81859 2.90191 3.14040 3.43420 3.64797 3.80832 3.90992 3.96252 4.07981 4.09079 4.15221 4.23899 4.29479 4.35206 4.38023 4.41858 4.45722 4.52380 4.57477 4.59295 4.71602 4.72842 4.76477 4.80467 4.84278 4.92412 5.03604 5.04218 5.08091 5.11629 5.12652 5.29611 5.33450 5.43023 5.50279 5.64194 5.71986 5.74385 6.02522 6.07026 6.11183 6.22045 6.41053 6.97020 7.18586 7.78688 8.76299 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.028711 B = 0.002119 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.987593 B =13213.306204 C =13515.389196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.075 3.925 3 C -0.184 4.184 4 N -0.536 5.536 5 C 0.036 3.964 6 C 0.104 3.896 7 N -0.614 5.614 8 C 0.514 3.486 9 O -0.581 6.581 10 C -0.088 4.088 11 C -0.025 4.025 12 C -0.181 4.181 13 C -0.073 4.073 14 C -0.246 4.246 15 C 0.112 3.888 16 O -0.234 6.234 17 C -0.413 4.413 18 H 0.100 0.900 19 C -0.026 4.026 20 N -0.922 5.922 21 Si 1.021 2.979 22 H -0.252 1.252 23 H -0.265 1.265 24 H -0.269 1.269 25 C -0.192 4.192 26 C 0.114 3.886 27 C 0.052 3.948 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.141 0.859 40 H 0.121 0.879 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.118 0.882 44 H 0.272 0.728 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.631 12.585 -22.973 30.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 C -0.242 4.242 4 N -0.261 5.261 5 C -0.092 4.092 6 C -0.018 4.018 7 N -0.348 5.348 8 C 0.303 3.697 9 O -0.460 6.460 10 C -0.128 4.128 11 C -0.025 4.025 12 C -0.199 4.199 13 C -0.091 4.091 14 C -0.266 4.266 15 C 0.062 3.938 16 O -0.141 6.141 17 C -0.489 4.489 18 H 0.118 0.882 19 C -0.223 4.223 20 N -0.560 5.560 21 Si 0.840 3.160 22 H -0.175 1.175 23 H -0.190 1.190 24 H -0.195 1.195 25 C -0.211 4.211 26 C -0.009 4.009 27 C -0.077 4.077 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.130 0.870 39 H 0.159 0.841 40 H 0.139 0.861 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.115 0.885 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -15.320 11.575 -22.883 29.872 hybrid contribution 1.355 0.279 0.697 1.549 sum -13.965 11.854 -22.186 28.771 Atomic orbital electron populations 1.21847 0.93061 1.02492 1.02463 1.21776 0.96636 0.92317 0.92542 1.22445 1.00849 0.98062 1.02874 1.62211 1.09673 1.51553 1.02655 1.22617 1.02388 0.95216 0.88969 1.22175 0.78452 1.01330 0.99815 1.48270 1.09777 1.63851 1.12884 1.20984 0.86088 0.77282 0.85315 1.90737 1.18023 1.53793 1.83469 1.20719 0.96867 1.05355 0.89815 1.19180 0.96609 0.92800 0.93959 1.20942 0.99197 0.98174 1.01594 1.21127 0.96520 0.97875 0.93585 1.21291 1.05186 0.94820 1.05264 1.19870 0.94793 0.88844 0.90284 1.83934 1.46581 1.38656 1.44942 1.21865 1.07445 1.01446 1.18188 0.88232 1.26632 1.02189 0.93838 0.99629 1.70196 1.41907 1.04416 1.39516 0.84504 0.75374 0.79370 0.76759 1.17513 1.18985 1.19451 1.20204 1.01576 1.00507 0.98862 1.21666 0.98955 0.97615 0.82702 1.22357 0.88407 0.98389 0.98544 0.91975 0.91285 0.92131 0.89828 0.93603 0.91097 0.92377 0.94235 0.87064 0.89817 0.86991 0.84082 0.86102 0.83706 0.83677 0.86424 0.91856 0.87644 0.90589 0.91110 0.88549 0.94943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.00 71.98 0.65 -0.38 16 2 C 0.08 0.73 2.96 44.92 0.13 0.87 16 3 C -0.18 -1.77 8.51 71.98 0.61 -1.16 16 4 N -0.54 -6.80 4.62 -870.01 -4.02 -10.82 16 5 C 0.04 0.39 4.76 86.38 0.41 0.80 16 6 C 0.10 1.35 6.50 86.35 0.56 1.92 16 7 N -0.61 -13.20 3.01 -817.94 -2.46 -15.66 16 8 C 0.51 15.03 7.70 87.66 0.68 15.70 16 9 O -0.58 -23.73 15.49 -3.02 -0.05 -23.77 16 10 C -0.09 -2.17 4.20 29.10 0.12 -2.05 16 11 C -0.02 -0.90 4.37 -19.88 -0.09 -0.98 16 12 C -0.18 -6.11 9.70 22.30 0.22 -5.89 16 13 C -0.07 -2.73 10.04 22.25 0.22 -2.50 16 14 C -0.25 -11.59 9.17 22.39 0.21 -11.39 16 15 C 0.11 6.02 6.65 22.58 0.15 6.17 16 16 O -0.23 -14.93 9.76 -22.76 -0.22 -15.15 16 17 C -0.41 -25.31 9.49 67.92 0.64 -24.67 16 18 H 0.10 5.63 5.20 -2.91 -0.02 5.62 16 19 C -0.03 -1.53 5.49 84.83 0.47 -1.07 16 20 N -0.92 -58.67 13.67 21.61 0.30 -58.37 16 21 Si 1.02 44.70 29.55 68.60 2.03 46.72 16 22 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 C -0.19 -8.90 9.64 22.39 0.22 -8.68 16 26 C 0.11 2.38 6.60 86.35 0.57 2.95 16 27 C 0.05 0.80 5.14 86.38 0.44 1.25 16 28 H 0.06 0.40 6.27 -2.39 -0.01 0.38 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.08 0.82 8.07 -2.38 -0.02 0.80 16 32 H 0.04 0.55 6.69 -2.39 -0.02 0.53 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.58 6.56 -2.39 -0.02 0.56 16 35 H 0.04 0.47 6.71 -2.39 -0.02 0.46 16 36 H 0.11 0.79 5.97 -2.38 -0.01 0.77 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 0.98 6.02 -2.39 -0.01 0.97 16 39 H 0.14 2.23 7.60 -2.39 -0.02 2.21 16 40 H 0.12 2.50 7.94 -2.39 -0.02 2.48 16 41 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 42 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.12 5.59 5.64 -2.91 -0.02 5.57 16 44 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 45 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 46 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 47 H 0.07 1.85 7.06 -2.39 -0.02 1.84 16 48 H 0.10 1.26 8.05 -2.39 -0.02 1.24 16 49 H 0.03 0.57 6.81 -2.39 -0.02 0.55 16 Total: -1.00 -83.63 385.10 2.74 -80.89 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.95 Total: 25.29 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 6.21 Total: -29.13 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -6.18 Total: -84.85 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.27 Total: -38.93 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -83.63 2.74 -80.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089705814.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.347 kcal (2) G-P(sol) polarization free energy of solvation -83.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds