Wall clock time and date at job start Tue Mar 31 2020 16:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47071 * 2 1 4 4 N 1.46503 * 109.46936 * 179.97438 * 3 2 1 5 5 C 1.37098 * 120.00192 * 266.55058 * 4 3 2 6 6 H 1.07998 * 119.99734 * 181.27906 * 5 4 3 7 7 C 1.38954 * 119.99939 * 1.27108 * 5 4 3 8 8 N 1.31416 * 119.99795 * 33.59554 * 7 5 4 9 9 Si 1.86798 * 120.00226 * 213.59589 * 7 5 4 10 10 H 1.48497 * 109.47318 * 95.00023 * 9 7 5 11 11 H 1.48497 * 109.47355 * 215.00137 * 9 7 5 12 12 H 1.48500 * 109.46797 * 334.99962 * 9 7 5 13 13 C 1.34778 * 119.99736 * 86.55203 * 4 3 2 14 14 O 1.21290 * 119.99946 * 359.97438 * 13 4 3 15 15 C 1.50700 * 119.99748 * 179.97438 * 13 4 3 16 16 N 1.46500 * 109.46834 * 179.97438 * 15 13 4 17 17 C 1.46494 * 120.00128 * 95.88117 * 16 15 13 18 18 C 1.53000 * 109.47192 * 264.86207 * 17 16 15 19 19 C 1.50703 * 109.46984 * 180.02562 * 18 17 16 20 20 C 1.38235 * 120.00191 * 90.00004 * 19 18 17 21 21 C 1.38231 * 119.99738 * 179.97438 * 20 19 18 22 22 C 1.38231 * 120.00393 * 359.97438 * 21 20 19 23 23 C 1.38242 * 120.00097 * 0.27926 * 22 21 20 24 24 C 1.38237 * 119.99445 * 269.97411 * 19 18 17 25 25 C 1.34776 * 119.99948 * 275.87702 * 16 15 13 26 26 C 1.50703 * 120.00211 * 4.67043 * 25 16 15 27 27 O 1.21285 * 120.00148 * 184.66999 * 25 16 15 28 28 H 1.09003 * 109.47174 * 59.99702 * 1 2 3 29 29 H 1.09004 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46811 * 299.99744 * 1 2 3 31 31 H 1.08998 * 109.46683 * 240.00295 * 2 1 3 32 32 H 1.09003 * 109.47174 * 120.00298 * 2 1 3 33 33 H 1.09007 * 109.46582 * 60.00552 * 3 2 1 34 34 H 1.09001 * 109.47542 * 300.00699 * 3 2 1 35 35 H 0.97000 * 119.99608 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47003 * 59.99781 * 15 13 4 37 37 H 1.08997 * 109.47438 * 300.00149 * 15 13 4 38 38 H 1.09004 * 109.47439 * 144.86050 * 17 16 15 39 39 H 1.09003 * 109.47289 * 24.86192 * 17 16 15 40 40 H 1.08992 * 109.47319 * 59.99903 * 18 17 16 41 41 H 1.08998 * 109.47222 * 299.99731 * 18 17 16 42 42 H 1.07997 * 120.00019 * 359.97372 * 20 19 18 43 43 H 1.08001 * 119.99665 * 179.97438 * 21 20 19 44 44 H 1.07998 * 120.00611 * 180.02562 * 22 21 20 45 45 H 1.08000 * 120.00108 * 179.72944 * 23 22 21 46 46 H 1.08002 * 120.00595 * 0.02562 * 24 19 18 47 47 H 1.09002 * 109.46817 * 355.25229 * 26 25 16 48 48 H 1.09006 * 109.46963 * 115.24413 * 26 25 16 49 49 H 1.08993 * 109.47628 * 235.24800 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.5141 1.1860 6 1 5.2698 1.5349 1.1853 7 6 3.4951 1.5600 2.3884 8 7 2.3578 0.9138 2.5150 9 14 4.1773 2.5403 3.8247 10 1 3.5715 3.8961 3.8309 11 1 3.8514 1.8467 5.0967 12 1 5.6514 2.6574 3.6883 13 6 4.1794 1.3721 -1.1642 14 8 3.5733 1.3083 -2.2129 15 6 5.6864 1.3726 -1.1636 16 7 6.1752 1.2886 -2.5421 17 6 6.5417 2.5089 -3.2650 18 6 5.3532 2.9805 -4.1051 19 6 5.7305 4.2355 -4.8492 20 6 6.2910 4.1495 -6.1099 21 6 6.6365 5.3008 -6.7926 22 6 6.4212 6.5380 -6.2149 23 6 5.8656 6.6238 -4.9520 24 6 5.5156 5.4727 -4.2712 25 6 6.2878 0.0886 -3.1452 26 6 5.8126 -1.1562 -2.4410 27 8 6.7715 0.0104 -4.2547 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9565 -0.8899 35 1 1.8729 0.9456 3.3545 36 1 6.0498 0.5155 -0.5967 37 1 6.0492 2.2922 -0.7044 38 1 7.3898 2.3035 -3.9183 39 1 6.8133 3.2865 -2.5510 40 1 4.5053 3.1860 -3.4519 41 1 5.0817 2.2030 -4.8191 42 1 6.4589 3.1830 -6.5615 43 1 7.0748 5.2336 -7.7774 44 1 6.6908 7.4375 -6.7484 45 1 5.7014 7.5903 -4.4988 46 1 5.0777 5.5399 -3.2862 47 1 5.4900 -0.9018 -1.4314 48 1 4.9768 -1.5884 -2.9914 49 1 6.6271 -1.8787 -2.3910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090370846.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:23 Heat of formation + Delta-G solvation = -39.959314 kcal Electronic energy + Delta-G solvation = -29411.387988 eV Core-core repulsion = 25531.771972 eV Total energy + Delta-G solvation = -3879.616016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.88163 -39.04837 -38.31616 -35.71693 -34.80904 -33.12601 -32.42878 -31.59249 -30.81364 -29.99896 -28.25157 -27.02266 -25.61512 -24.17966 -23.46282 -22.47919 -20.90882 -20.70249 -19.44336 -18.71247 -17.21970 -16.82200 -16.54320 -16.30564 -15.59827 -15.05625 -15.00983 -14.70157 -14.39832 -14.26319 -13.95650 -13.63290 -13.40821 -13.24739 -13.14374 -12.96531 -12.64374 -12.54571 -12.46950 -12.17099 -12.02798 -11.77787 -11.58270 -11.48648 -11.35749 -11.06208 -10.99974 -10.90986 -10.86358 -10.53059 -10.49050 -10.43332 -10.30908 -9.56241 -9.41655 -9.08962 -8.92442 -8.85745 -8.55839 -7.97841 -7.96646 -6.63145 -3.95497 1.42453 1.46517 2.99153 3.00678 3.14769 3.14998 3.40210 3.72606 3.86702 3.96215 4.67941 4.80222 4.93538 4.96619 5.03931 5.09285 5.22442 5.40393 5.55461 5.59034 5.59390 5.64890 5.69519 5.77597 5.82273 5.93046 5.95318 6.00936 6.06001 6.07854 6.11089 6.24087 6.29654 6.34036 6.52462 6.55503 6.56863 6.58090 6.77796 6.83071 6.86772 6.89795 6.93825 7.09374 7.20464 7.32023 7.55118 7.65557 7.75190 8.25638 8.56868 8.92082 9.39860 9.81673 10.37285 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.003510 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.575052 B = 7976.212889 C = 8678.155400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.137 3.863 4 N -0.433 5.433 5 C -0.358 4.358 6 H 0.102 0.898 7 C 0.051 3.949 8 N -0.831 5.831 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.426 3.574 14 O -0.597 6.597 15 C 0.105 3.895 16 N -0.591 5.591 17 C 0.130 3.870 18 C -0.094 4.094 19 C -0.070 4.070 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.121 4.121 24 C -0.116 4.116 25 C 0.528 3.472 26 C -0.174 4.174 27 O -0.562 6.562 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.039 0.961 35 H 0.271 0.729 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.173 5.154 -5.923 9.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C 0.014 3.986 4 N -0.150 5.150 5 C -0.484 4.484 6 H 0.120 0.880 7 C -0.157 4.157 8 N -0.467 5.467 9 Si 0.728 3.272 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.213 3.787 14 O -0.483 6.483 15 C -0.022 4.022 16 N -0.322 5.322 17 C 0.007 3.993 18 C -0.132 4.132 19 C -0.071 4.071 20 C -0.134 4.134 21 C -0.140 4.140 22 C -0.150 4.150 23 C -0.139 4.139 24 C -0.134 4.134 25 C 0.317 3.683 26 C -0.233 4.233 27 O -0.441 6.441 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.140 0.860 47 H 0.101 0.899 48 H 0.111 0.889 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.968 5.026 -6.825 9.825 hybrid contribution 0.058 0.523 1.090 1.210 sum 5.026 5.548 -5.735 9.430 Atomic orbital electron populations 1.21596 0.97529 0.99932 1.00429 1.21715 0.93827 0.98342 1.01838 1.21299 0.80065 0.96871 1.00343 1.43876 1.05503 1.60796 1.04865 1.19554 0.92447 1.53488 0.82955 0.88037 1.25106 0.96053 0.95889 0.98655 1.70231 1.16719 1.33065 1.26643 0.86324 0.79778 0.80589 0.80491 1.20286 1.21072 1.19264 1.20296 0.89380 0.84827 0.84206 1.90563 1.69495 1.57063 1.31229 1.21443 0.94353 1.04431 0.81932 1.47627 1.64107 1.06175 1.14281 1.21330 0.96808 0.85808 0.95351 1.20987 0.99225 0.93875 0.99147 1.20015 0.97371 0.95073 0.94613 1.21153 0.98906 0.98585 0.94749 1.21115 1.00416 0.92640 0.99793 1.21085 1.00601 0.97443 0.95853 1.21127 0.99341 0.98266 0.95152 1.21150 1.00152 0.91986 1.00136 1.20626 0.76859 0.85053 0.85719 1.21920 1.03075 0.95717 1.02605 1.90633 1.46076 1.87026 1.20406 0.94376 0.94162 0.93001 0.94655 0.88899 0.89212 0.94214 0.91865 0.88401 0.88465 0.90420 0.90798 0.89360 0.90663 0.86019 0.86398 0.86533 0.86326 0.85970 0.89901 0.88894 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 37.16 0.37 -2.10 16 2 C -0.12 -2.51 5.79 -26.73 -0.15 -2.67 16 3 C 0.14 3.07 4.58 -4.04 -0.02 3.05 16 4 N -0.43 -9.66 2.63 -114.80 -0.30 -9.96 16 5 C -0.36 -7.93 9.23 -14.93 -0.14 -8.07 16 6 H 0.10 2.09 6.48 -52.49 -0.34 1.75 16 7 C 0.05 1.13 4.77 -17.46 -0.08 1.05 16 8 N -0.83 -18.97 8.97 55.50 0.50 -18.48 16 9 Si 0.90 17.45 29.66 -169.99 -5.04 12.40 16 10 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 11 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 12 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 13 C 0.43 9.00 7.05 -10.98 -0.08 8.92 16 14 O -0.60 -14.02 14.49 5.55 0.08 -13.94 16 15 C 0.10 1.80 3.92 -5.19 -0.02 1.78 16 16 N -0.59 -10.16 2.04 -175.06 -0.36 -10.51 16 17 C 0.13 2.04 5.42 -4.05 -0.02 2.02 16 18 C -0.09 -1.55 5.29 -27.88 -0.15 -1.69 16 19 C -0.07 -1.02 5.13 -104.62 -0.54 -1.55 16 20 C -0.12 -1.56 9.70 -39.58 -0.38 -1.95 16 21 C -0.12 -1.43 10.05 -39.59 -0.40 -1.82 16 22 C -0.13 -1.47 10.05 -39.58 -0.40 -1.86 16 23 C -0.12 -1.42 10.05 -39.58 -0.40 -1.81 16 24 C -0.12 -1.55 9.70 -39.58 -0.38 -1.94 16 25 C 0.53 9.66 7.53 -10.98 -0.08 9.58 16 26 C -0.17 -2.74 9.88 36.01 0.36 -2.38 16 27 O -0.56 -11.65 16.74 5.55 0.09 -11.55 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 2.14 6.46 -51.93 -0.34 1.80 16 33 H 0.09 2.09 5.82 -51.92 -0.30 1.79 16 34 H 0.04 0.91 7.53 -51.93 -0.39 0.52 16 35 H 0.27 5.91 8.31 -40.82 -0.34 5.57 16 36 H 0.10 1.57 6.22 -51.93 -0.32 1.25 16 37 H 0.10 1.54 7.53 -51.93 -0.39 1.14 16 38 H 0.08 1.24 7.52 -51.93 -0.39 0.85 16 39 H 0.07 1.03 7.79 -51.93 -0.40 0.62 16 40 H 0.09 1.64 6.98 -51.93 -0.36 1.28 16 41 H 0.07 1.39 8.08 -51.93 -0.42 0.97 16 42 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 47 H 0.08 1.32 5.25 -51.93 -0.27 1.05 16 48 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 49 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -27.22 397.03 -9.28 -36.50 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -7.72 Total: 11.00 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.52 Total: -1.45 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: -0.16 Total: -38.95 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: 0.17 Total: -25.50 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.04 Total: 12.40 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -27.22 -9.28 -36.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090370846.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.458 kcal (2) G-P(sol) polarization free energy of solvation -27.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds