Wall clock time and date at job start Tue Mar 31 2020 16:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47071 * 2 1 4 4 N 1.46503 * 109.46936 * 179.97438 * 3 2 1 5 5 C 1.37098 * 120.00192 * 266.55058 * 4 3 2 6 6 H 1.07998 * 119.99734 * 181.27906 * 5 4 3 7 7 C 1.38954 * 119.99939 * 1.27108 * 5 4 3 8 8 N 1.31416 * 119.99795 * 33.59554 * 7 5 4 9 9 Si 1.86798 * 120.00226 * 213.59589 * 7 5 4 10 10 H 1.48497 * 109.47318 * 95.00023 * 9 7 5 11 11 H 1.48497 * 109.47355 * 215.00137 * 9 7 5 12 12 H 1.48500 * 109.46797 * 334.99962 * 9 7 5 13 13 C 1.34778 * 119.99736 * 86.55203 * 4 3 2 14 14 O 1.21290 * 119.99946 * 359.97438 * 13 4 3 15 15 C 1.50700 * 119.99748 * 179.97438 * 13 4 3 16 16 N 1.46500 * 109.46834 * 179.97438 * 15 13 4 17 17 C 1.46494 * 120.00128 * 95.88117 * 16 15 13 18 18 C 1.53000 * 109.47192 * 264.86207 * 17 16 15 19 19 C 1.50703 * 109.46984 * 180.02562 * 18 17 16 20 20 C 1.38235 * 120.00191 * 90.00004 * 19 18 17 21 21 C 1.38231 * 119.99738 * 179.97438 * 20 19 18 22 22 C 1.38231 * 120.00393 * 359.97438 * 21 20 19 23 23 C 1.38242 * 120.00097 * 0.27926 * 22 21 20 24 24 C 1.38237 * 119.99445 * 269.97411 * 19 18 17 25 25 C 1.34776 * 119.99948 * 275.87702 * 16 15 13 26 26 C 1.50703 * 120.00211 * 4.67043 * 25 16 15 27 27 O 1.21285 * 120.00148 * 184.66999 * 25 16 15 28 28 H 1.09003 * 109.47174 * 59.99702 * 1 2 3 29 29 H 1.09004 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46811 * 299.99744 * 1 2 3 31 31 H 1.08998 * 109.46683 * 240.00295 * 2 1 3 32 32 H 1.09003 * 109.47174 * 120.00298 * 2 1 3 33 33 H 1.09007 * 109.46582 * 60.00552 * 3 2 1 34 34 H 1.09001 * 109.47542 * 300.00699 * 3 2 1 35 35 H 0.97000 * 119.99608 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47003 * 59.99781 * 15 13 4 37 37 H 1.08997 * 109.47438 * 300.00149 * 15 13 4 38 38 H 1.09004 * 109.47439 * 144.86050 * 17 16 15 39 39 H 1.09003 * 109.47289 * 24.86192 * 17 16 15 40 40 H 1.08992 * 109.47319 * 59.99903 * 18 17 16 41 41 H 1.08998 * 109.47222 * 299.99731 * 18 17 16 42 42 H 1.07997 * 120.00019 * 359.97372 * 20 19 18 43 43 H 1.08001 * 119.99665 * 179.97438 * 21 20 19 44 44 H 1.07998 * 120.00611 * 180.02562 * 22 21 20 45 45 H 1.08000 * 120.00108 * 179.72944 * 23 22 21 46 46 H 1.08002 * 120.00595 * 0.02562 * 24 19 18 47 47 H 1.09002 * 109.46817 * 355.25229 * 26 25 16 48 48 H 1.09006 * 109.46963 * 115.24413 * 26 25 16 49 49 H 1.08993 * 109.47628 * 235.24800 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.5141 1.1860 6 1 5.2698 1.5349 1.1853 7 6 3.4951 1.5600 2.3884 8 7 2.3578 0.9138 2.5150 9 14 4.1773 2.5403 3.8247 10 1 3.5715 3.8961 3.8309 11 1 3.8514 1.8467 5.0967 12 1 5.6514 2.6574 3.6883 13 6 4.1794 1.3721 -1.1642 14 8 3.5733 1.3083 -2.2129 15 6 5.6864 1.3726 -1.1636 16 7 6.1752 1.2886 -2.5421 17 6 6.5417 2.5089 -3.2650 18 6 5.3532 2.9805 -4.1051 19 6 5.7305 4.2355 -4.8492 20 6 6.2910 4.1495 -6.1099 21 6 6.6365 5.3008 -6.7926 22 6 6.4212 6.5380 -6.2149 23 6 5.8656 6.6238 -4.9520 24 6 5.5156 5.4727 -4.2712 25 6 6.2878 0.0886 -3.1452 26 6 5.8126 -1.1562 -2.4410 27 8 6.7715 0.0104 -4.2547 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9565 -0.8899 35 1 1.8729 0.9456 3.3545 36 1 6.0498 0.5155 -0.5967 37 1 6.0492 2.2922 -0.7044 38 1 7.3898 2.3035 -3.9183 39 1 6.8133 3.2865 -2.5510 40 1 4.5053 3.1860 -3.4519 41 1 5.0817 2.2030 -4.8191 42 1 6.4589 3.1830 -6.5615 43 1 7.0748 5.2336 -7.7774 44 1 6.6908 7.4375 -6.7484 45 1 5.7014 7.5903 -4.4988 46 1 5.0777 5.5399 -3.2862 47 1 5.4900 -0.9018 -1.4314 48 1 4.9768 -1.5884 -2.9914 49 1 6.6271 -1.8787 -2.3910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090370846.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:22 Heat of formation + Delta-G solvation = -51.078887 kcal Electronic energy + Delta-G solvation = -29411.870169 eV Core-core repulsion = 25531.771972 eV Total energy + Delta-G solvation = -3880.098197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.33717 -40.16214 -39.89880 -37.30698 -36.37916 -34.42441 -34.03383 -33.29773 -31.77113 -31.23142 -29.63297 -28.38408 -27.26776 -25.81513 -24.69217 -23.44497 -22.45483 -21.91840 -21.11280 -20.22443 -18.78647 -18.21876 -17.92083 -17.59469 -17.04192 -16.34985 -16.17462 -16.02315 -15.94889 -15.80387 -15.58469 -15.27885 -14.58140 -14.46751 -14.34215 -14.13932 -14.11157 -14.08635 -13.82052 -13.55605 -13.29523 -13.17406 -13.11079 -12.88935 -12.77416 -12.59568 -12.51182 -12.14948 -12.13171 -12.03954 -11.99079 -11.93510 -11.67680 -11.30936 -10.88911 -10.67752 -10.62734 -9.82401 -9.76263 -9.72049 -9.40554 -8.31915 -5.69166 0.43375 0.49768 1.44912 1.54431 1.58554 1.64963 2.02692 2.09024 2.35660 2.88137 3.06747 3.13002 3.65528 3.90770 3.92642 4.15850 4.16186 4.20254 4.25128 4.30423 4.33775 4.35430 4.47821 4.51568 4.53634 4.55581 4.61508 4.62396 4.66583 4.70426 4.87775 4.91078 4.99802 5.04089 5.09620 5.18497 5.22430 5.24616 5.29564 5.46276 5.52667 5.58490 5.61312 5.61754 5.76076 5.82423 5.90832 6.13128 6.32605 6.53813 7.12399 7.20944 7.69808 8.11842 8.69309 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.003510 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.575052 B = 7976.212889 C = 8678.155400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 C 0.141 3.859 4 N -0.443 5.443 5 C -0.373 4.373 6 H 0.119 0.881 7 C 0.016 3.984 8 N -0.854 5.854 9 Si 0.965 3.035 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.256 1.256 13 C 0.421 3.579 14 O -0.626 6.626 15 C 0.113 3.887 16 N -0.589 5.589 17 C 0.129 3.871 18 C -0.077 4.077 19 C -0.089 4.089 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.129 4.129 25 C 0.519 3.481 26 C -0.168 4.168 27 O -0.591 6.591 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.018 0.982 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.025 0.975 35 H 0.271 0.729 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.115 0.885 43 H 0.143 0.857 44 H 0.149 0.851 45 H 0.144 0.856 46 H 0.121 0.879 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.528 6.673 -5.554 10.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.145 4.145 3 C 0.018 3.982 4 N -0.161 5.161 5 C -0.499 4.499 6 H 0.136 0.864 7 C -0.190 4.190 8 N -0.489 5.489 9 Si 0.790 3.210 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.180 1.180 13 C 0.209 3.791 14 O -0.515 6.515 15 C -0.013 4.013 16 N -0.319 5.319 17 C 0.007 3.993 18 C -0.115 4.115 19 C -0.090 4.090 20 C -0.150 4.150 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.139 4.139 24 C -0.147 4.147 25 C 0.310 3.690 26 C -0.227 4.227 27 O -0.473 6.473 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.133 0.867 43 H 0.161 0.839 44 H 0.167 0.833 45 H 0.162 0.838 46 H 0.139 0.861 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.332 6.550 -6.440 11.157 hybrid contribution -0.406 0.077 0.917 1.006 sum 5.926 6.627 -5.523 10.466 Atomic orbital electron populations 1.21524 0.95129 1.01282 1.00771 1.21557 0.95942 0.97089 0.99950 1.21198 0.80801 0.97268 0.98941 1.44073 1.05463 1.61034 1.05518 1.19941 0.93321 1.53808 0.82875 0.86385 1.25787 0.96481 0.96122 1.00642 1.70296 1.17739 1.33690 1.27213 0.85355 0.79680 0.78485 0.77489 1.21045 1.21623 1.18012 1.20938 0.90991 0.83762 0.83383 1.90551 1.70617 1.58090 1.32200 1.21440 0.91421 1.06218 0.82205 1.47714 1.63336 1.06455 1.14395 1.21441 0.96309 0.85848 0.95710 1.20703 0.98563 0.94182 0.98092 1.19890 0.99213 0.94566 0.95300 1.21214 0.99729 0.99332 0.94701 1.21424 0.99678 0.92185 1.00655 1.21495 0.99112 0.98329 0.95570 1.21451 0.98414 0.98614 0.95384 1.21233 1.00753 0.92220 1.00494 1.21109 0.76395 0.86029 0.85504 1.21909 1.03795 0.95189 1.01784 1.90613 1.47526 1.87529 1.21653 0.93746 0.92324 0.92870 0.96298 0.90655 0.90219 0.95632 0.91845 0.86676 0.86363 0.90608 0.88564 0.91986 0.93801 0.86708 0.83935 0.83326 0.83813 0.86091 0.90143 0.89486 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.91 71.98 0.71 -3.90 16 2 C -0.11 -4.59 5.79 30.60 0.18 -4.42 16 3 C 0.14 6.46 4.58 86.38 0.40 6.85 16 4 N -0.44 -19.91 2.63 -635.51 -1.67 -21.58 16 5 C -0.37 -16.24 9.23 84.04 0.78 -15.46 16 6 H 0.12 4.62 6.48 -2.91 -0.02 4.60 16 7 C 0.02 0.69 4.77 84.93 0.41 1.09 16 8 N -0.85 -38.92 8.97 21.66 0.19 -38.73 16 9 Si 0.96 34.98 29.66 68.60 2.03 37.02 16 10 H -0.28 -10.58 7.11 99.48 0.71 -9.88 16 11 H -0.29 -10.70 7.11 99.48 0.71 -9.99 16 12 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 13 C 0.42 17.94 7.05 87.66 0.62 18.56 16 14 O -0.63 -30.34 14.49 -3.06 -0.04 -30.39 16 15 C 0.11 3.80 3.92 85.63 0.34 4.13 16 16 N -0.59 -20.21 2.04 -826.15 -1.68 -21.89 16 17 C 0.13 4.10 5.42 86.38 0.47 4.57 16 18 C -0.08 -2.65 5.29 29.85 0.16 -2.49 16 19 C -0.09 -2.63 5.13 -19.86 -0.10 -2.73 16 20 C -0.13 -3.56 9.70 22.27 0.22 -3.34 16 21 C -0.12 -2.62 10.05 22.27 0.22 -2.39 16 22 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 23 C -0.12 -2.55 10.05 22.27 0.22 -2.33 16 24 C -0.13 -3.38 9.70 22.27 0.22 -3.16 16 25 C 0.52 19.10 7.53 87.66 0.66 19.76 16 26 C -0.17 -5.21 9.88 71.24 0.70 -4.51 16 27 O -0.59 -24.95 16.74 -3.04 -0.05 -25.00 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.85 8.14 -2.38 -0.02 1.84 16 30 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 3.52 6.46 -2.39 -0.02 3.50 16 33 H 0.08 3.79 5.82 -2.38 -0.01 3.77 16 34 H 0.03 1.21 7.53 -2.39 -0.02 1.19 16 35 H 0.27 11.82 8.31 -92.71 -0.77 11.05 16 36 H 0.12 3.51 6.22 -2.39 -0.01 3.49 16 37 H 0.12 3.50 7.53 -2.39 -0.02 3.49 16 38 H 0.08 2.44 7.52 -2.38 -0.02 2.43 16 39 H 0.10 2.59 7.79 -2.39 -0.02 2.57 16 40 H 0.06 2.43 6.98 -2.39 -0.02 2.42 16 41 H 0.04 1.74 8.08 -2.39 -0.02 1.72 16 42 H 0.11 3.16 8.06 -2.91 -0.02 3.13 16 43 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 44 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 45 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 46 H 0.12 3.10 8.06 -2.91 -0.02 3.07 16 47 H 0.08 2.52 5.25 -2.39 -0.01 2.51 16 48 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 49 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -59.64 397.03 6.13 -53.51 By element: Atomic # 1 Polarization: 38.12 SS G_CDS: 0.93 Total: 39.05 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 6.41 Total: 8.00 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -3.16 Total: -82.19 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -0.10 Total: -55.39 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.02 kcal Total: -59.64 6.13 -53.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090370846.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.433 kcal (2) G-P(sol) polarization free energy of solvation -59.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds