Wall clock time and date at job start Tue Mar 31 2020 16:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47028 * 2 1 4 4 N 1.46898 * 109.47256 * 120.00342 * 2 1 3 5 5 C 1.46900 * 111.00159 * 174.99839 * 4 2 1 6 6 C 1.53233 * 109.34042 * 187.24880 * 5 4 2 7 7 N 1.47071 * 108.52625 * 306.17514 * 6 5 4 8 8 C 1.34782 * 120.88152 * 231.18663 * 7 6 5 9 9 O 1.21275 * 119.99957 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00012 * 179.97438 * 8 7 6 11 11 C 1.50703 * 109.47047 * 179.97438 * 10 8 7 12 12 C 1.38306 * 119.92975 * 270.29820 * 11 10 8 13 13 C 1.38104 * 120.06267 * 180.29756 * 12 11 10 14 14 C 1.38874 * 119.93265 * 359.43007 * 13 12 11 15 15 O 1.35749 * 120.06890 * 180.29770 * 14 13 12 16 16 C 1.34834 * 117.00013 * 354.46142 * 15 14 13 17 17 H 1.07996 * 120.00021 * 5.05939 * 16 15 14 18 18 C 1.38654 * 119.99707 * 185.05824 * 16 15 14 19 19 N 1.31550 * 120.00182 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99577 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47118 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47416 * 119.99910 * 20 18 16 23 23 H 1.48499 * 109.47261 * 240.00285 * 20 18 16 24 24 C 1.38882 * 119.86301 * 0.27303 * 14 13 12 25 25 C 1.38094 * 119.92975 * 0.02562 * 24 14 13 26 26 C 1.47081 * 118.23830 * 51.45375 * 7 6 5 27 27 C 1.46899 * 110.99692 * 299.30122 * 4 2 1 28 28 H 1.09004 * 109.46858 * 299.99688 * 1 2 3 29 29 H 1.08994 * 109.47254 * 59.99912 * 1 2 3 30 30 H 1.08998 * 109.47115 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46858 * 240.00312 * 2 1 3 32 32 H 1.09004 * 109.47047 * 60.00427 * 3 2 1 33 33 H 1.09005 * 109.47061 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47175 * 300.00136 * 3 2 1 35 35 H 1.08999 * 109.48952 * 67.28957 * 5 4 2 36 36 H 1.08999 * 109.49519 * 307.21361 * 5 4 2 37 37 H 1.09001 * 109.63105 * 186.45356 * 6 5 4 38 38 H 1.09006 * 109.62682 * 65.88621 * 6 5 4 39 39 H 1.09007 * 109.47286 * 60.00136 * 10 8 7 40 40 H 1.08998 * 109.47397 * 300.00180 * 10 8 7 41 41 H 1.07990 * 119.96779 * 0.02562 * 12 11 10 42 42 H 1.08000 * 120.02708 * 179.69965 * 13 12 11 43 43 H 0.97006 * 119.99724 * 179.97438 * 19 18 16 44 44 H 1.08005 * 120.03486 * 180.02562 * 24 14 13 45 45 H 1.08006 * 119.96521 * 180.02562 * 25 24 14 46 46 H 1.08997 * 109.62843 * 68.25898 * 26 7 6 47 47 H 1.09004 * 109.62979 * 188.83338 * 26 7 6 48 48 H 1.08993 * 109.49334 * 292.70170 * 27 4 2 49 49 H 1.09003 * 109.49613 * 52.79066 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4833 -0.8166 1.1750 6 6 3.9374 -1.6973 2.3438 7 7 3.3807 -1.1458 3.5884 8 6 4.1716 -0.9041 4.6526 9 8 5.3592 -1.1420 4.5920 10 6 3.5801 -0.3382 5.9179 11 6 4.6676 -0.1640 6.9466 12 6 4.9673 -1.1972 7.8157 13 6 5.9591 -1.0383 8.7635 14 6 6.6638 0.1561 8.8355 15 8 7.6434 0.3131 9.7621 16 6 7.8057 -0.6831 10.6561 17 1 7.2271 -1.5904 10.5646 18 6 8.7155 -0.5426 11.6930 19 7 9.4207 0.5623 11.8042 20 14 8.9408 -1.9231 12.9311 21 1 8.0377 -3.0502 12.5857 22 1 10.3497 -2.3911 12.8999 23 1 8.6144 -1.4259 14.2918 24 6 6.3647 1.1896 7.9573 25 6 5.3676 1.0268 7.0158 26 6 1.9368 -0.8707 3.6429 27 6 1.5624 -0.0169 2.4209 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 3.9336 0.1717 1.2679 36 1 3.7942 -1.2714 0.2345 37 1 5.0260 -1.6997 2.3991 38 1 3.5733 -2.7144 2.1989 39 1 2.8229 -1.0216 6.3024 40 1 3.1229 0.6280 5.7048 41 1 4.4222 -2.1276 7.7561 42 1 6.1893 -1.8438 9.4451 43 1 10.0569 0.6606 12.5298 44 1 6.9113 2.1196 8.0106 45 1 5.1348 1.8300 6.3323 46 1 1.3840 -1.8098 3.6205 47 1 1.7021 -0.3262 4.5575 48 1 2.0395 0.9602 2.4965 49 1 0.4802 0.1081 2.3841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110624277.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:13 Heat of formation + Delta-G solvation = -25.712962 kcal Electronic energy + Delta-G solvation = -28165.005208 eV Core-core repulsion = 24286.006960 eV Total energy + Delta-G solvation = -3878.998248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.47515 -39.15859 -38.51018 -36.49585 -35.56605 -32.65829 -32.19794 -31.36694 -30.92989 -30.09393 -27.72959 -27.36986 -26.12219 -25.03614 -24.03543 -22.29703 -21.91701 -20.85034 -20.14174 -18.70272 -17.92962 -17.27401 -16.92532 -16.29694 -15.84185 -15.58447 -15.38142 -15.03213 -14.63376 -14.53270 -14.35517 -14.22679 -13.79102 -13.66237 -13.44050 -13.26297 -13.03772 -12.80207 -12.69525 -12.62134 -12.35942 -12.25683 -11.97652 -11.79902 -11.70784 -11.46755 -11.38382 -11.26986 -11.20976 -11.00011 -10.79112 -10.67778 -10.55665 -10.38245 -9.62677 -9.27175 -8.96795 -8.78023 -8.52878 -8.09368 -7.10756 -6.40416 -3.98771 2.29765 2.31334 2.77076 2.93716 3.15958 3.16812 3.22552 3.46830 4.00824 4.37341 4.38979 4.53417 4.64071 4.67980 4.79624 4.87018 4.91332 4.95639 5.06062 5.14711 5.15361 5.17242 5.21003 5.29306 5.34570 5.35133 5.37633 5.43337 5.46344 5.53964 5.64473 5.70373 5.71681 5.76884 5.78824 5.86089 5.90039 6.26948 6.37248 6.47318 6.63965 6.65585 6.75851 6.97054 7.10935 7.29321 7.37759 7.42869 7.50413 7.89571 8.05241 8.31243 9.05525 9.76707 10.77885 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.033816 B = 0.001983 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.818626 B =14119.924157 C =14299.038268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.076 3.924 3 C -0.188 4.188 4 N -0.531 5.531 5 C 0.041 3.959 6 C 0.117 3.883 7 N -0.624 5.624 8 C 0.512 3.488 9 O -0.521 6.521 10 C -0.078 4.078 11 C -0.170 4.170 12 C -0.056 4.056 13 C -0.232 4.232 14 C 0.157 3.843 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.192 4.192 25 C -0.060 4.060 26 C 0.113 3.887 27 C 0.033 3.967 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.269 0.731 44 H 0.116 0.884 45 H 0.107 0.893 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.043 0.957 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.877 -1.407 -21.980 29.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.255 5.255 5 C -0.088 4.088 6 C -0.006 4.006 7 N -0.361 5.361 8 C 0.301 3.699 9 O -0.395 6.395 10 C -0.118 4.118 11 C -0.171 4.171 12 C -0.074 4.074 13 C -0.251 4.251 14 C 0.103 3.897 15 O -0.082 6.082 16 C -0.466 4.466 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.211 4.211 25 C -0.078 4.078 26 C -0.011 4.011 27 C -0.095 4.095 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.134 0.866 45 H 0.125 0.875 46 H 0.093 0.907 47 H 0.109 0.891 48 H 0.061 0.939 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.049 -1.742 -21.785 28.991 hybrid contribution 0.386 0.113 0.470 0.618 sum -18.663 -1.628 -21.315 28.378 Atomic orbital electron populations 1.21880 0.94138 1.02524 1.01756 1.21722 0.95868 0.92466 0.93212 1.22494 1.01652 0.98073 1.02489 1.62195 1.10636 1.50913 1.01791 1.22501 0.87579 0.99467 0.99245 1.21609 1.00190 0.96625 0.82193 1.48265 1.08401 1.65671 1.13720 1.21074 0.86724 0.77594 0.84508 1.90731 1.15490 1.50839 1.82401 1.20429 0.97972 1.01736 0.91646 1.18649 1.02051 0.96045 1.00351 1.20503 0.96238 0.96559 0.94128 1.21104 1.01301 0.99093 1.03628 1.19382 0.87686 0.92816 0.89805 1.83977 1.43963 1.43618 1.36688 1.21379 1.24057 0.95817 1.05366 0.89031 1.25288 0.95729 0.98101 0.97498 1.70052 1.23228 1.25296 1.31306 0.85646 0.78578 0.79633 0.79560 1.19109 1.20186 1.20177 1.20147 1.02406 0.98874 0.99666 1.20377 0.94801 0.96126 0.96487 1.21915 0.80935 1.00129 0.98098 1.22671 1.01159 0.95883 0.89818 0.92445 0.92227 0.91725 0.89891 0.92272 0.92464 0.92005 0.94034 0.89750 0.88703 0.91127 0.89046 0.89169 0.87844 0.85581 0.92139 0.86579 0.87526 0.90683 0.89130 0.93896 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.00 37.16 0.33 -0.38 16 2 C 0.08 0.45 2.96 -67.71 -0.20 0.25 16 3 C -0.19 -1.13 8.51 37.16 0.32 -0.82 16 4 N -0.53 -3.87 4.61 -226.05 -1.04 -4.91 16 5 C 0.04 0.33 5.14 -3.70 -0.02 0.31 16 6 C 0.12 1.19 6.59 -3.61 -0.02 1.17 16 7 N -0.62 -6.86 3.00 -172.19 -0.52 -7.38 16 8 C 0.51 7.45 7.70 -10.98 -0.08 7.37 16 9 O -0.52 -10.10 15.49 5.56 0.09 -10.01 16 10 C -0.08 -1.02 4.19 -29.04 -0.12 -1.14 16 11 C -0.17 -3.04 4.38 -104.57 -0.46 -3.50 16 12 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 13 C -0.23 -5.32 9.17 -39.40 -0.36 -5.68 16 14 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 15 O -0.18 -5.29 9.76 0.04 0.00 -5.29 16 16 C -0.39 -11.21 9.49 30.89 0.29 -10.92 16 17 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 20 Si 0.94 21.02 29.55 -169.99 -5.02 15.99 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 C -0.19 -4.28 9.99 -39.40 -0.39 -4.68 16 25 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 26 C 0.11 0.86 6.53 -3.36 -0.02 0.84 16 27 C 0.03 0.23 4.78 -3.46 -0.02 0.21 16 28 H 0.06 0.27 6.27 -51.93 -0.33 -0.05 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 32 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 33 H 0.06 0.39 6.69 -51.93 -0.35 0.05 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.04 0.39 6.81 -51.93 -0.35 0.03 16 36 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 37 H 0.09 1.15 7.06 -51.93 -0.37 0.78 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.98 7.93 -51.93 -0.41 0.57 16 40 H 0.09 0.95 7.62 -51.93 -0.40 0.56 16 41 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.12 2.50 8.06 -52.48 -0.42 2.07 16 45 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 0.57 6.02 -51.93 -0.31 0.26 16 48 H 0.04 0.33 6.71 -51.93 -0.35 -0.02 16 49 H 0.09 0.48 5.97 -51.93 -0.31 0.17 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -34.43 385.14 -9.25 -43.68 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.44 Total: 2.50 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -1.88 Total: -15.28 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.80 Total: -37.40 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.09 Total: -15.30 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.43 -9.25 -43.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110624277.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.972 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds