Wall clock time and date at job start Tue Mar 31 2020 16:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47028 * 2 1 4 4 N 1.46898 * 109.47256 * 120.00342 * 2 1 3 5 5 C 1.46900 * 111.00159 * 174.99839 * 4 2 1 6 6 C 1.53233 * 109.34042 * 187.24880 * 5 4 2 7 7 N 1.47071 * 108.52625 * 306.17514 * 6 5 4 8 8 C 1.34782 * 120.88152 * 231.18663 * 7 6 5 9 9 O 1.21275 * 119.99957 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00012 * 179.97438 * 8 7 6 11 11 C 1.50703 * 109.47047 * 179.97438 * 10 8 7 12 12 C 1.38306 * 119.92975 * 270.29820 * 11 10 8 13 13 C 1.38104 * 120.06267 * 180.29756 * 12 11 10 14 14 C 1.38874 * 119.93265 * 359.43007 * 13 12 11 15 15 O 1.35749 * 120.06890 * 180.29770 * 14 13 12 16 16 C 1.34834 * 117.00013 * 354.46142 * 15 14 13 17 17 H 1.07996 * 120.00021 * 5.05939 * 16 15 14 18 18 C 1.38654 * 119.99707 * 185.05824 * 16 15 14 19 19 N 1.31550 * 120.00182 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99577 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47118 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47416 * 119.99910 * 20 18 16 23 23 H 1.48499 * 109.47261 * 240.00285 * 20 18 16 24 24 C 1.38882 * 119.86301 * 0.27303 * 14 13 12 25 25 C 1.38094 * 119.92975 * 0.02562 * 24 14 13 26 26 C 1.47081 * 118.23830 * 51.45375 * 7 6 5 27 27 C 1.46899 * 110.99692 * 299.30122 * 4 2 1 28 28 H 1.09004 * 109.46858 * 299.99688 * 1 2 3 29 29 H 1.08994 * 109.47254 * 59.99912 * 1 2 3 30 30 H 1.08998 * 109.47115 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46858 * 240.00312 * 2 1 3 32 32 H 1.09004 * 109.47047 * 60.00427 * 3 2 1 33 33 H 1.09005 * 109.47061 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47175 * 300.00136 * 3 2 1 35 35 H 1.08999 * 109.48952 * 67.28957 * 5 4 2 36 36 H 1.08999 * 109.49519 * 307.21361 * 5 4 2 37 37 H 1.09001 * 109.63105 * 186.45356 * 6 5 4 38 38 H 1.09006 * 109.62682 * 65.88621 * 6 5 4 39 39 H 1.09007 * 109.47286 * 60.00136 * 10 8 7 40 40 H 1.08998 * 109.47397 * 300.00180 * 10 8 7 41 41 H 1.07990 * 119.96779 * 0.02562 * 12 11 10 42 42 H 1.08000 * 120.02708 * 179.69965 * 13 12 11 43 43 H 0.97006 * 119.99724 * 179.97438 * 19 18 16 44 44 H 1.08005 * 120.03486 * 180.02562 * 24 14 13 45 45 H 1.08006 * 119.96521 * 180.02562 * 25 24 14 46 46 H 1.08997 * 109.62843 * 68.25898 * 26 7 6 47 47 H 1.09004 * 109.62979 * 188.83338 * 26 7 6 48 48 H 1.08993 * 109.49334 * 292.70170 * 27 4 2 49 49 H 1.09003 * 109.49613 * 52.79066 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4833 -0.8166 1.1750 6 6 3.9374 -1.6973 2.3438 7 7 3.3807 -1.1458 3.5884 8 6 4.1716 -0.9041 4.6526 9 8 5.3592 -1.1420 4.5920 10 6 3.5801 -0.3382 5.9179 11 6 4.6676 -0.1640 6.9466 12 6 4.9673 -1.1972 7.8157 13 6 5.9591 -1.0383 8.7635 14 6 6.6638 0.1561 8.8355 15 8 7.6434 0.3131 9.7621 16 6 7.8057 -0.6831 10.6561 17 1 7.2271 -1.5904 10.5646 18 6 8.7155 -0.5426 11.6930 19 7 9.4207 0.5623 11.8042 20 14 8.9408 -1.9231 12.9311 21 1 8.0377 -3.0502 12.5857 22 1 10.3497 -2.3911 12.8999 23 1 8.6144 -1.4259 14.2918 24 6 6.3647 1.1896 7.9573 25 6 5.3676 1.0268 7.0158 26 6 1.9368 -0.8707 3.6429 27 6 1.5624 -0.0169 2.4209 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 3.9336 0.1717 1.2679 36 1 3.7942 -1.2714 0.2345 37 1 5.0260 -1.6997 2.3991 38 1 3.5733 -2.7144 2.1989 39 1 2.8229 -1.0216 6.3024 40 1 3.1229 0.6280 5.7048 41 1 4.4222 -2.1276 7.7561 42 1 6.1893 -1.8438 9.4451 43 1 10.0569 0.6606 12.5298 44 1 6.9113 2.1196 8.0106 45 1 5.1348 1.8300 6.3323 46 1 1.3840 -1.8098 3.6205 47 1 1.7021 -0.3262 4.5575 48 1 2.0395 0.9602 2.4965 49 1 0.4802 0.1081 2.3841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110624277.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:12 Heat of formation + Delta-G solvation = -48.740180 kcal Electronic energy + Delta-G solvation = -28166.003743 eV Core-core repulsion = 24286.006960 eV Total energy + Delta-G solvation = -3879.996783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.42353 -40.67839 -39.60364 -38.18698 -36.44158 -34.41780 -33.40461 -32.27044 -31.88091 -31.77231 -28.65318 -28.08405 -27.49744 -26.65554 -24.71022 -23.64304 -23.21553 -22.13368 -20.99186 -19.85448 -19.55277 -18.83094 -18.17325 -17.13652 -16.77441 -16.62089 -16.32328 -16.16545 -15.94875 -15.82301 -15.51947 -15.49945 -15.15209 -14.96299 -14.65386 -14.40640 -14.30345 -14.09385 -13.65541 -13.55656 -13.38899 -13.15218 -12.98751 -12.83390 -12.71696 -12.62723 -12.48314 -12.27474 -12.21854 -12.20455 -12.09038 -11.90110 -11.86492 -11.48222 -11.18260 -10.88843 -10.71021 -9.78234 -9.76256 -9.19315 -8.90397 -8.47743 -6.15890 0.60781 0.66418 1.33861 1.42431 1.52777 1.69137 2.02937 2.17381 2.81668 2.91035 3.15715 3.51034 3.70169 3.83771 3.92941 3.98203 4.03578 4.10596 4.15322 4.19609 4.25158 4.37360 4.40388 4.43752 4.48552 4.54981 4.59647 4.65193 4.72470 4.77938 4.79389 4.80913 4.84990 4.92709 5.04503 5.05913 5.09369 5.11670 5.14579 5.29633 5.33069 5.42756 5.51864 5.58050 5.71107 5.77150 6.02661 6.07249 6.11630 6.21855 6.46698 6.96818 7.25572 7.78163 8.75957 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.033816 B = 0.001983 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.818626 B =14119.924157 C =14299.038268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.075 3.925 3 C -0.184 4.184 4 N -0.534 5.534 5 C 0.050 3.950 6 C 0.115 3.885 7 N -0.615 5.615 8 C 0.510 3.490 9 O -0.582 6.582 10 C -0.075 4.075 11 C -0.145 4.145 12 C -0.060 4.060 13 C -0.243 4.243 14 C 0.112 3.888 15 O -0.234 6.234 16 C -0.413 4.413 17 H 0.100 0.900 18 C -0.025 4.025 19 N -0.921 5.921 20 Si 1.021 2.979 21 H -0.252 1.252 22 H -0.269 1.269 23 H -0.265 1.265 24 C -0.206 4.206 25 C -0.058 4.058 26 C 0.107 3.893 27 C 0.034 3.966 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.118 0.882 43 H 0.273 0.727 44 H 0.112 0.888 45 H 0.144 0.856 46 H 0.087 0.913 47 H 0.112 0.888 48 H 0.036 0.964 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.908 -2.462 -23.791 33.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C -0.243 4.243 4 N -0.258 5.258 5 C -0.079 4.079 6 C -0.008 4.008 7 N -0.349 5.349 8 C 0.300 3.700 9 O -0.462 6.462 10 C -0.115 4.115 11 C -0.146 4.146 12 C -0.078 4.078 13 C -0.262 4.262 14 C 0.062 3.938 15 O -0.141 6.141 16 C -0.490 4.490 17 H 0.118 0.882 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.840 3.160 21 H -0.175 1.175 22 H -0.194 1.194 23 H -0.190 1.190 24 C -0.226 4.226 25 C -0.076 4.076 26 C -0.015 4.015 27 C -0.094 4.094 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.135 0.865 43 H 0.082 0.918 44 H 0.130 0.870 45 H 0.162 0.838 46 H 0.106 0.894 47 H 0.131 0.869 48 H 0.054 0.946 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -23.182 -2.796 -23.670 33.250 hybrid contribution 1.355 0.478 0.665 1.583 sum -21.827 -2.317 -23.006 31.797 Atomic orbital electron populations 1.21842 0.92987 1.02561 1.02422 1.21776 0.96685 0.92178 0.92660 1.22452 1.00783 0.98248 1.02812 1.62226 1.09610 1.51399 1.02597 1.22371 0.88429 0.98343 0.98779 1.21632 0.98880 0.97594 0.82710 1.48312 1.09736 1.64015 1.12882 1.21232 0.86087 0.77155 0.85505 1.90732 1.18055 1.53837 1.83552 1.20552 0.96699 1.04782 0.89429 1.19250 1.01417 0.94406 0.99508 1.20922 0.95248 0.98473 0.93115 1.21222 1.02274 0.98070 1.04681 1.19931 0.88541 0.94881 0.90421 1.83938 1.46748 1.44773 1.38603 1.21867 1.24760 0.96323 1.06009 0.88227 1.26629 0.94986 1.01157 0.99453 1.70197 1.24853 1.28097 1.32840 0.84503 0.78905 0.76142 0.76459 1.17522 1.19402 1.19023 1.20429 1.03603 0.98310 1.00217 1.20839 0.93259 0.97865 0.95599 1.22248 0.78474 1.01292 0.99524 1.22718 1.02318 0.95192 0.89205 0.92006 0.91387 0.91947 0.89828 0.92459 0.93739 0.91165 0.95350 0.88659 0.91229 0.90273 0.85399 0.85420 0.84459 0.86464 0.91834 0.87004 0.83815 0.89438 0.86949 0.94617 0.87152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.00 71.98 0.65 -0.28 16 2 C 0.07 0.69 2.96 44.92 0.13 0.82 16 3 C -0.18 -1.81 8.51 71.98 0.61 -1.19 16 4 N -0.53 -6.19 4.61 -869.09 -4.01 -10.20 16 5 C 0.05 0.72 5.14 86.38 0.44 1.17 16 6 C 0.11 2.16 6.59 86.35 0.57 2.73 16 7 N -0.62 -11.62 3.00 -817.06 -2.45 -14.07 16 8 C 0.51 13.33 7.70 87.66 0.68 14.00 16 9 O -0.58 -22.04 15.49 -3.01 -0.05 -22.08 16 10 C -0.08 -1.59 4.19 29.10 0.12 -1.47 16 11 C -0.14 -4.76 4.38 -19.83 -0.09 -4.85 16 12 C -0.06 -2.22 9.69 22.25 0.22 -2.00 16 13 C -0.24 -11.41 9.17 22.39 0.21 -11.20 16 14 C 0.11 5.99 6.65 22.58 0.15 6.14 16 15 O -0.23 -14.82 9.76 -22.77 -0.22 -15.04 16 16 C -0.41 -25.16 9.49 67.92 0.64 -24.52 16 17 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16 18 C -0.03 -1.48 5.49 84.83 0.47 -1.01 16 19 N -0.92 -58.29 13.67 21.61 0.30 -58.00 16 20 Si 1.02 44.36 29.55 68.60 2.03 46.39 16 21 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 24 C -0.21 -9.49 9.99 22.39 0.22 -9.27 16 25 C -0.06 -2.09 9.69 22.25 0.22 -1.88 16 26 C 0.11 1.13 6.53 86.50 0.57 1.69 16 27 C 0.03 0.33 4.78 86.54 0.41 0.74 16 28 H 0.06 0.36 6.27 -2.39 -0.01 0.34 16 29 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.08 0.78 8.07 -2.39 -0.02 0.76 16 32 H 0.06 0.58 6.56 -2.39 -0.02 0.57 16 33 H 0.04 0.55 6.69 -2.38 -0.02 0.53 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.03 0.49 6.81 -2.39 -0.02 0.48 16 36 H 0.10 1.17 8.05 -2.39 -0.02 1.15 16 37 H 0.07 1.69 7.06 -2.39 -0.02 1.67 16 38 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.13 1.90 7.93 -2.38 -0.02 1.88 16 40 H 0.13 1.86 7.62 -2.39 -0.02 1.84 16 41 H 0.14 4.15 8.06 -2.92 -0.02 4.12 16 42 H 0.12 5.57 5.64 -2.91 -0.02 5.56 16 43 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 44 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 45 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 46 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.11 0.72 6.02 -2.38 -0.01 0.70 16 48 H 0.04 0.42 6.71 -2.39 -0.02 0.41 16 49 H 0.11 0.67 5.97 -2.39 -0.01 0.65 16 Total: -1.00 -82.56 385.14 2.76 -79.80 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.95 Total: 23.58 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 6.22 Total: -30.36 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -6.17 Total: -82.27 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.27 Total: -37.12 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -82.56 2.76 -79.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110624277.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.058 kcal (2) G-P(sol) polarization free energy of solvation -82.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds