Wall clock time and date at job start Tue Mar 31 2020 16:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46979 * 2 1 4 4 N 1.46903 * 109.47174 * 119.99569 * 2 1 3 5 5 C 1.46903 * 111.00198 * 298.95868 * 4 2 1 6 6 C 1.46897 * 111.00347 * 174.99992 * 4 2 1 7 7 C 1.52994 * 109.47458 * 189.99964 * 6 4 2 8 8 N 1.46497 * 109.47276 * 180.02562 * 7 6 4 9 9 C 1.34780 * 120.00062 * 179.73016 * 8 7 6 10 10 O 1.21718 * 119.99957 * 359.97438 * 9 8 7 11 11 C 1.46256 * 119.99800 * 179.97438 * 9 8 7 12 12 C 1.35022 * 119.99894 * 179.97438 * 11 9 8 13 13 C 1.46957 * 120.00300 * 180.02562 * 12 11 9 14 14 C 1.40029 * 120.09915 * 359.72225 * 13 12 11 15 15 C 1.37601 * 119.89798 * 179.69970 * 14 13 12 16 16 C 1.39180 * 120.09887 * 0.60088 * 15 14 13 17 17 O 1.35565 * 119.89376 * 179.69676 * 16 15 14 18 18 C 1.34792 * 116.99720 * 174.42235 * 17 16 15 19 19 H 1.07998 * 119.99415 * 5.05109 * 18 17 16 20 20 C 1.38711 * 120.00019 * 185.05884 * 18 17 16 21 21 N 1.31506 * 120.00201 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00134 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47190 * 90.00207 * 22 20 18 24 24 H 1.48497 * 109.46872 * 210.00189 * 22 20 18 25 25 H 1.48501 * 109.47001 * 330.00012 * 22 20 18 26 26 C 1.39171 * 120.20408 * 359.67315 * 16 15 14 27 27 C 1.37600 * 120.10110 * 0.02662 * 26 16 15 28 28 H 1.09002 * 109.47139 * 299.99963 * 1 2 3 29 29 H 1.09000 * 109.47233 * 60.00733 * 1 2 3 30 30 H 1.09004 * 109.46739 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47195 * 239.99524 * 2 1 3 32 32 H 1.09005 * 109.46935 * 59.99588 * 3 2 1 33 33 H 1.08996 * 109.46786 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46540 * 299.99692 * 3 2 1 35 35 H 1.08997 * 109.46671 * 296.04874 * 5 4 2 36 36 H 1.09001 * 109.47113 * 56.04095 * 5 4 2 37 37 H 1.09002 * 109.47267 * 176.04638 * 5 4 2 38 38 H 1.08999 * 109.46868 * 70.00144 * 6 4 2 39 39 H 1.09000 * 109.47013 * 310.00465 * 6 4 2 40 40 H 1.08999 * 109.46934 * 60.00220 * 7 6 4 41 41 H 1.09000 * 109.47417 * 300.00253 * 7 6 4 42 42 H 0.97000 * 119.99935 * 359.97438 * 8 7 6 43 43 H 1.08004 * 120.00191 * 359.97438 * 11 9 8 44 44 H 1.08004 * 119.99907 * 359.97438 * 12 11 9 45 45 H 1.08004 * 120.05337 * 359.97438 * 14 13 12 46 46 H 1.07999 * 119.94808 * 180.27028 * 15 14 13 47 47 H 0.96998 * 120.00257 * 179.97438 * 21 20 18 48 48 H 1.08001 * 119.94985 * 180.02562 * 26 16 15 49 49 H 1.07997 * 120.05103 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.5691 -0.0120 2.4210 6 6 3.4832 -0.8164 1.1753 7 6 3.9347 -1.7504 2.2998 8 7 5.3942 -1.8735 2.2760 9 6 6.0202 -2.6469 3.1852 10 8 5.3728 -3.2427 4.0263 11 6 7.4774 -2.7703 3.1610 12 6 8.1045 -3.5447 4.0721 13 6 9.5687 -3.6683 4.0482 14 6 10.3151 -2.9884 3.0779 15 6 11.6863 -3.1022 3.0631 16 6 12.3305 -3.9013 4.0030 17 8 13.6812 -4.0153 3.9809 18 6 14.2533 -4.7090 4.9850 19 1 13.6355 -5.2126 5.7138 20 6 15.6354 -4.7760 5.0823 21 7 16.1935 -5.4524 6.0623 22 14 16.7038 -3.9054 3.8214 23 1 16.9868 -2.5225 4.2827 24 1 17.9815 -4.6448 3.6603 25 1 15.9924 -3.8569 2.5188 26 6 11.5924 -4.5834 4.9658 27 6 10.2213 -4.4708 4.9920 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 2.0051 0.9861 2.4627 36 1 0.4820 0.0665 2.4133 37 1 1.8860 -0.5836 3.2933 38 1 3.9334 0.1662 1.3163 39 1 3.7973 -1.2256 0.2150 40 1 3.4844 -2.7330 2.1588 41 1 3.6206 -1.3412 3.2601 42 1 5.9104 -1.3957 1.6081 43 1 8.0518 -2.2420 2.4143 44 1 7.5302 -4.0727 4.8190 45 1 9.8156 -2.3722 2.3448 46 1 12.2631 -2.5747 2.3178 47 1 17.1600 -5.4996 6.1301 48 1 12.0966 -5.2021 5.6934 49 1 9.6494 -5.0001 5.7397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112928852.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:12 Heat of formation + Delta-G solvation = -20.149118 kcal Electronic energy + Delta-G solvation = -26369.445642 eV Core-core repulsion = 22490.688660 eV Total energy + Delta-G solvation = -3878.756981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.80379 -39.34034 -38.90504 -37.06695 -35.15431 -33.24952 -32.52204 -32.32715 -30.53500 -29.36320 -28.32239 -27.62397 -26.48744 -25.56897 -23.41675 -22.33302 -22.05111 -20.84090 -20.08877 -19.27483 -18.07230 -17.46919 -17.13701 -16.86577 -16.04566 -15.62460 -15.25962 -15.00249 -14.92918 -14.72289 -14.32606 -14.08481 -14.00988 -13.96476 -13.63587 -13.52703 -13.25998 -12.84851 -12.62716 -12.56801 -12.45413 -12.40611 -12.21519 -11.90196 -11.81513 -11.73108 -11.69862 -11.38497 -11.20588 -11.18984 -11.02505 -10.76714 -10.28078 -9.85256 -9.65966 -9.55068 -9.15891 -8.91314 -8.78926 -8.47176 -7.24370 -6.60513 -4.24403 0.99151 2.03221 2.47881 2.94993 3.11489 3.15350 3.28550 3.53199 3.69392 4.08530 4.33671 4.42802 4.44419 4.57011 4.62952 4.66806 4.79823 4.89346 4.93808 4.97942 5.05920 5.11328 5.12806 5.17149 5.22981 5.35479 5.42829 5.43612 5.48668 5.52879 5.59712 5.61111 5.69647 5.73081 5.80686 5.93940 6.02171 6.26916 6.30989 6.42881 6.52608 6.58801 6.59207 6.67367 6.92641 7.08759 7.16164 7.41587 7.49583 7.62675 7.83972 8.30330 8.72817 9.32979 10.45769 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.001486 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.759906 B =18841.044675 C =19539.737078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 C -0.189 4.189 4 N -0.532 5.532 5 C 0.011 3.989 6 C 0.043 3.957 7 C 0.124 3.876 8 N -0.734 5.734 9 C 0.556 3.444 10 O -0.556 6.556 11 C -0.278 4.278 12 C 0.035 3.965 13 C -0.189 4.189 14 C -0.046 4.046 15 C -0.199 4.199 16 C 0.173 3.827 17 O -0.203 6.203 18 C -0.392 4.392 19 H 0.111 0.889 20 C 0.067 3.933 21 N -0.867 5.867 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.258 1.258 26 C -0.230 4.230 27 C -0.037 4.037 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.399 0.601 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.283 0.717 48 H 0.138 0.862 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.268 12.110 -11.733 30.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.248 4.248 4 N -0.256 5.256 5 C -0.136 4.136 6 C -0.085 4.085 7 C -0.001 4.001 8 N -0.387 5.387 9 C 0.347 3.653 10 O -0.436 6.436 11 C -0.299 4.299 12 C 0.016 3.984 13 C -0.190 4.190 14 C -0.064 4.064 15 C -0.219 4.219 16 C 0.119 3.881 17 O -0.105 6.105 18 C -0.467 4.467 19 H 0.128 0.872 20 C -0.139 4.139 21 N -0.503 5.503 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.182 1.182 26 C -0.249 4.249 27 C -0.055 4.055 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.233 0.767 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.093 0.907 48 H 0.155 0.845 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -25.526 11.200 -11.174 30.031 hybrid contribution 1.204 1.355 -0.670 1.933 sum -24.321 12.556 -11.843 29.823 Atomic orbital electron populations 1.21879 0.94056 1.02635 1.01777 1.21741 0.95999 0.92408 0.93138 1.22501 1.01540 0.98128 1.02594 1.62121 1.09760 1.51155 1.02529 1.22575 1.01392 0.97069 0.92609 1.22265 0.88217 0.98506 0.99549 1.21206 0.80165 1.00348 0.98336 1.45765 1.07346 1.50612 1.34929 1.18381 0.88583 0.78042 0.80244 1.90788 1.68105 1.46865 1.37855 1.22454 0.92273 1.09344 1.05811 1.22306 0.92666 0.90043 0.93422 1.18531 0.91710 1.07089 1.01716 1.20885 0.92641 0.96562 0.96293 1.20144 0.94017 1.05060 1.02642 1.19364 0.83564 0.92144 0.93061 1.83505 1.15952 1.64948 1.46129 1.20881 0.91688 1.29301 1.04834 0.87189 1.24530 0.96039 0.96231 0.97074 1.69614 1.12360 1.38474 1.29813 0.86162 0.79150 0.79586 0.81956 1.19648 1.20508 1.18214 1.21222 0.93936 1.06417 1.03284 1.21048 0.93861 0.94797 0.95805 0.92428 0.92174 0.91677 0.89838 0.92196 0.92476 0.91909 0.95096 0.90842 0.90911 0.93914 0.90135 0.90754 0.91639 0.76747 0.85869 0.85746 0.86253 0.86135 0.90656 0.84494 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.00 37.16 0.33 -0.38 16 2 C 0.08 0.42 2.96 -67.71 -0.20 0.22 16 3 C -0.19 -0.94 8.50 37.16 0.32 -0.63 16 4 N -0.53 -3.66 4.75 -234.89 -1.12 -4.77 16 5 C 0.01 0.07 8.51 60.07 0.51 0.58 16 6 C 0.04 0.29 4.51 -3.83 -0.02 0.27 16 7 C 0.12 1.14 5.60 -4.05 -0.02 1.12 16 8 N -0.73 -7.22 5.55 -61.76 -0.34 -7.56 16 9 C 0.56 7.57 7.74 -13.04 -0.10 7.47 16 10 O -0.56 -9.67 16.23 5.17 0.08 -9.59 16 11 C -0.28 -3.60 9.41 -37.50 -0.35 -3.95 16 12 C 0.04 0.52 9.45 -37.20 -0.35 0.17 16 13 C -0.19 -3.09 5.87 -105.03 -0.62 -3.71 16 14 C -0.05 -0.73 9.40 -39.14 -0.37 -1.09 16 15 C -0.20 -3.67 9.97 -39.46 -0.39 -4.07 16 16 C 0.17 3.77 6.66 -38.89 -0.26 3.51 16 17 O -0.20 -5.05 8.57 0.73 0.01 -5.04 16 18 C -0.39 -10.50 9.94 30.91 0.31 -10.19 16 19 H 0.11 3.00 5.41 -52.49 -0.28 2.72 16 20 C 0.07 1.78 5.49 -17.52 -0.10 1.68 16 21 N -0.87 -23.91 13.96 55.48 0.77 -23.13 16 22 Si 0.91 20.56 28.62 -169.99 -4.86 15.70 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 26 C -0.23 -4.68 9.14 -39.47 -0.36 -5.04 16 27 C -0.04 -0.64 9.78 -39.15 -0.38 -1.02 16 28 H 0.06 0.28 6.34 -51.93 -0.33 -0.05 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.46 8.03 -51.93 -0.42 0.04 16 32 H 0.06 0.31 6.47 -51.93 -0.34 -0.02 16 33 H 0.06 0.30 6.75 -51.93 -0.35 -0.05 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.03 0.19 6.51 -51.93 -0.34 -0.15 16 36 H 0.07 0.41 6.13 -51.93 -0.32 0.09 16 37 H 0.07 0.51 6.47 -51.93 -0.34 0.17 16 38 H 0.04 0.27 6.94 -51.93 -0.36 -0.09 16 39 H 0.08 0.49 8.00 -51.93 -0.42 0.08 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.67 6.55 -51.93 -0.34 0.33 16 42 H 0.40 2.79 8.45 -40.82 -0.34 2.44 16 43 H 0.12 1.32 6.07 -52.48 -0.32 1.00 16 44 H 0.12 1.84 7.52 -52.48 -0.39 1.44 16 45 H 0.12 1.50 6.16 -52.48 -0.32 1.18 16 46 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 47 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.14 2.92 5.62 -52.49 -0.29 2.62 16 49 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -30.09 395.35 -8.73 -38.81 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.17 Total: 4.69 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -2.05 Total: -15.06 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.68 Total: -35.47 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.09 Total: -14.63 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.86 Total: 15.70 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.09 -8.73 -38.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112928852.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.665 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds