Wall clock time and date at job start Tue Mar 31 2020 16:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46979 * 2 1 4 4 N 1.46903 * 109.47174 * 119.99569 * 2 1 3 5 5 C 1.46903 * 111.00198 * 298.95868 * 4 2 1 6 6 C 1.46897 * 111.00347 * 174.99992 * 4 2 1 7 7 C 1.52994 * 109.47458 * 189.99964 * 6 4 2 8 8 N 1.46497 * 109.47276 * 180.02562 * 7 6 4 9 9 C 1.34780 * 120.00062 * 179.73016 * 8 7 6 10 10 O 1.21718 * 119.99957 * 359.97438 * 9 8 7 11 11 C 1.46256 * 119.99800 * 179.97438 * 9 8 7 12 12 C 1.35022 * 119.99894 * 179.97438 * 11 9 8 13 13 C 1.46957 * 120.00300 * 180.02562 * 12 11 9 14 14 C 1.40029 * 120.09915 * 359.72225 * 13 12 11 15 15 C 1.37601 * 119.89798 * 179.69970 * 14 13 12 16 16 C 1.39180 * 120.09887 * 0.60088 * 15 14 13 17 17 O 1.35565 * 119.89376 * 179.69676 * 16 15 14 18 18 C 1.34792 * 116.99720 * 174.42235 * 17 16 15 19 19 H 1.07998 * 119.99415 * 5.05109 * 18 17 16 20 20 C 1.38711 * 120.00019 * 185.05884 * 18 17 16 21 21 N 1.31506 * 120.00201 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00134 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47190 * 90.00207 * 22 20 18 24 24 H 1.48497 * 109.46872 * 210.00189 * 22 20 18 25 25 H 1.48501 * 109.47001 * 330.00012 * 22 20 18 26 26 C 1.39171 * 120.20408 * 359.67315 * 16 15 14 27 27 C 1.37600 * 120.10110 * 0.02662 * 26 16 15 28 28 H 1.09002 * 109.47139 * 299.99963 * 1 2 3 29 29 H 1.09000 * 109.47233 * 60.00733 * 1 2 3 30 30 H 1.09004 * 109.46739 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47195 * 239.99524 * 2 1 3 32 32 H 1.09005 * 109.46935 * 59.99588 * 3 2 1 33 33 H 1.08996 * 109.46786 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46540 * 299.99692 * 3 2 1 35 35 H 1.08997 * 109.46671 * 296.04874 * 5 4 2 36 36 H 1.09001 * 109.47113 * 56.04095 * 5 4 2 37 37 H 1.09002 * 109.47267 * 176.04638 * 5 4 2 38 38 H 1.08999 * 109.46868 * 70.00144 * 6 4 2 39 39 H 1.09000 * 109.47013 * 310.00465 * 6 4 2 40 40 H 1.08999 * 109.46934 * 60.00220 * 7 6 4 41 41 H 1.09000 * 109.47417 * 300.00253 * 7 6 4 42 42 H 0.97000 * 119.99935 * 359.97438 * 8 7 6 43 43 H 1.08004 * 120.00191 * 359.97438 * 11 9 8 44 44 H 1.08004 * 119.99907 * 359.97438 * 12 11 9 45 45 H 1.08004 * 120.05337 * 359.97438 * 14 13 12 46 46 H 1.07999 * 119.94808 * 180.27028 * 15 14 13 47 47 H 0.96998 * 120.00257 * 179.97438 * 21 20 18 48 48 H 1.08001 * 119.94985 * 180.02562 * 26 16 15 49 49 H 1.07997 * 120.05103 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.5691 -0.0120 2.4210 6 6 3.4832 -0.8164 1.1753 7 6 3.9347 -1.7504 2.2998 8 7 5.3942 -1.8735 2.2760 9 6 6.0202 -2.6469 3.1852 10 8 5.3728 -3.2427 4.0263 11 6 7.4774 -2.7703 3.1610 12 6 8.1045 -3.5447 4.0721 13 6 9.5687 -3.6683 4.0482 14 6 10.3151 -2.9884 3.0779 15 6 11.6863 -3.1022 3.0631 16 6 12.3305 -3.9013 4.0030 17 8 13.6812 -4.0153 3.9809 18 6 14.2533 -4.7090 4.9850 19 1 13.6355 -5.2126 5.7138 20 6 15.6354 -4.7760 5.0823 21 7 16.1935 -5.4524 6.0623 22 14 16.7038 -3.9054 3.8214 23 1 16.9868 -2.5225 4.2827 24 1 17.9815 -4.6448 3.6603 25 1 15.9924 -3.8569 2.5188 26 6 11.5924 -4.5834 4.9658 27 6 10.2213 -4.4708 4.9920 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 2.0051 0.9861 2.4627 36 1 0.4820 0.0665 2.4133 37 1 1.8860 -0.5836 3.2933 38 1 3.9334 0.1662 1.3163 39 1 3.7973 -1.2256 0.2150 40 1 3.4844 -2.7330 2.1588 41 1 3.6206 -1.3412 3.2601 42 1 5.9104 -1.3957 1.6081 43 1 8.0518 -2.2420 2.4143 44 1 7.5302 -4.0727 4.8190 45 1 9.8156 -2.3722 2.3448 46 1 12.2631 -2.5747 2.3178 47 1 17.1600 -5.4996 6.1301 48 1 12.0966 -5.2021 5.6934 49 1 9.6494 -5.0001 5.7397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112928852.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:11 Heat of formation + Delta-G solvation = -39.772035 kcal Electronic energy + Delta-G solvation = -26370.296555 eV Core-core repulsion = 22490.688660 eV Total energy + Delta-G solvation = -3879.607895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.01500 -40.68342 -39.55520 -38.59273 -36.04930 -34.76135 -34.19342 -32.97320 -32.00115 -30.33467 -29.32026 -28.12514 -27.48086 -26.94509 -24.57880 -23.78722 -22.90444 -22.04665 -20.79069 -20.40026 -19.64742 -19.14788 -18.25657 -17.57263 -16.78368 -16.72886 -16.41218 -16.30571 -15.79797 -15.77328 -15.61912 -15.49727 -15.31783 -14.96834 -14.68702 -14.37361 -14.24885 -14.05814 -14.03488 -13.96305 -13.38511 -13.18194 -13.01846 -12.93315 -12.73877 -12.72097 -12.61835 -12.35923 -12.27596 -12.13136 -11.94002 -11.92320 -11.61990 -11.30496 -11.15536 -11.01631 -10.67400 -10.07850 -9.91276 -9.27610 -8.73611 -8.53468 -6.25421 -0.27650 0.55576 1.11025 1.32718 1.37546 1.52496 2.13854 2.26413 2.36155 2.80696 3.00911 3.09596 3.15653 3.78096 3.85033 3.93162 3.99935 4.04315 4.05493 4.18217 4.30025 4.34656 4.37881 4.42805 4.46529 4.52348 4.58502 4.63694 4.75935 4.78611 4.84324 4.91770 4.94248 4.99012 5.06780 5.09119 5.12852 5.21851 5.28590 5.32529 5.39109 5.39698 5.44741 5.59151 5.70804 5.80387 5.83865 6.07359 6.12567 6.14876 6.60576 6.79727 7.28882 7.50839 8.57416 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.001486 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.759906 B =18841.044675 C =19539.737078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.075 3.925 3 C -0.184 4.184 4 N -0.545 5.545 5 C 0.013 3.987 6 C 0.052 3.948 7 C 0.127 3.873 8 N -0.713 5.713 9 C 0.548 3.452 10 O -0.597 6.597 11 C -0.236 4.236 12 C 0.009 3.991 13 C -0.160 4.160 14 C -0.039 4.039 15 C -0.193 4.193 16 C 0.135 3.865 17 O -0.233 6.233 18 C -0.405 4.405 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.918 5.918 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.268 1.268 25 H -0.259 1.259 26 C -0.243 4.243 27 C -0.047 4.047 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.417 0.583 43 H 0.159 0.841 44 H 0.120 0.880 45 H 0.168 0.832 46 H 0.140 0.860 47 H 0.286 0.714 48 H 0.113 0.887 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.956 14.878 -14.929 35.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 C -0.243 4.243 4 N -0.270 5.270 5 C -0.135 4.135 6 C -0.076 4.076 7 C 0.002 3.998 8 N -0.365 5.365 9 C 0.339 3.661 10 O -0.480 6.480 11 C -0.257 4.257 12 C -0.011 4.011 13 C -0.161 4.161 14 C -0.057 4.057 15 C -0.212 4.212 16 C 0.085 3.915 17 O -0.139 6.139 18 C -0.481 4.481 19 H 0.101 0.899 20 C -0.186 4.186 21 N -0.557 5.557 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.262 4.262 27 C -0.065 4.065 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.255 0.745 43 H 0.177 0.823 44 H 0.138 0.862 45 H 0.186 0.814 46 H 0.158 0.842 47 H 0.096 0.904 48 H 0.130 0.870 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -28.280 14.009 -14.418 34.697 hybrid contribution 1.344 0.624 0.218 1.498 sum -26.935 14.634 -14.199 33.783 Atomic orbital electron populations 1.21863 0.93717 1.02245 1.02322 1.21787 0.96293 0.92724 0.92527 1.22454 1.01449 0.97594 1.02813 1.62108 1.09854 1.51867 1.03128 1.22549 1.01810 0.97004 0.92133 1.22168 0.88337 0.98275 0.98815 1.21193 0.79490 1.00073 0.99026 1.45619 1.07852 1.49044 1.33980 1.18585 0.88909 0.78202 0.80380 1.90793 1.68937 1.48598 1.39652 1.22787 0.92111 1.06400 1.04396 1.22167 0.91447 0.92320 0.95135 1.18819 0.92735 1.04460 1.00060 1.21367 0.91546 0.96174 0.96609 1.20503 0.95258 1.03762 1.01686 1.19951 0.82963 0.93813 0.94780 1.83461 1.17406 1.66907 1.46163 1.20760 0.92000 1.29925 1.05375 0.89911 1.25321 0.97138 0.97132 0.99026 1.69702 1.12755 1.41178 1.32072 0.85208 0.77554 0.78679 0.79252 1.18962 1.19281 1.18329 1.21217 0.95325 1.06623 1.03085 1.21288 0.92678 0.95498 0.97013 0.92438 0.91107 0.92515 0.89597 0.92531 0.92488 0.91159 0.94655 0.90313 0.91975 0.92880 0.89012 0.92445 0.92674 0.74547 0.82333 0.86187 0.81443 0.84247 0.90385 0.86951 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.00 71.98 0.65 -0.47 16 2 C 0.07 0.65 2.96 44.92 0.13 0.78 16 3 C -0.18 -1.32 8.50 71.98 0.61 -0.71 16 4 N -0.55 -6.27 4.75 -897.04 -4.26 -10.53 16 5 C 0.01 0.14 8.51 127.69 1.09 1.23 16 6 C 0.05 0.54 4.51 86.30 0.39 0.93 16 7 C 0.13 2.01 5.60 86.38 0.48 2.50 16 8 N -0.71 -11.14 5.55 -467.51 -2.60 -13.74 16 9 C 0.55 12.92 7.74 86.33 0.67 13.59 16 10 O -0.60 -19.55 16.23 -4.41 -0.07 -19.62 16 11 C -0.24 -4.91 9.41 23.61 0.22 -4.69 16 12 C 0.01 0.24 9.45 23.82 0.23 0.46 16 13 C -0.16 -4.71 5.87 -20.13 -0.12 -4.83 16 14 C -0.04 -1.08 9.40 22.55 0.21 -0.87 16 15 C -0.19 -6.67 9.97 22.35 0.22 -6.45 16 16 C 0.14 6.01 6.66 22.72 0.15 6.16 16 17 O -0.23 -12.11 8.57 -20.32 -0.17 -12.28 16 18 C -0.40 -23.13 9.94 67.93 0.68 -22.46 16 19 H 0.08 4.98 5.41 -2.91 -0.02 4.96 16 20 C 0.01 0.75 5.49 84.85 0.47 1.21 16 21 N -0.92 -53.56 13.96 21.62 0.30 -53.26 16 22 Si 0.97 43.71 28.62 68.60 1.96 45.67 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 26 C -0.24 -10.34 9.14 22.34 0.20 -10.13 16 27 C -0.05 -1.60 9.78 22.55 0.22 -1.38 16 28 H 0.06 0.45 6.34 -2.39 -0.02 0.43 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.09 0.71 8.03 -2.39 -0.02 0.69 16 32 H 0.06 0.45 6.47 -2.38 -0.02 0.43 16 33 H 0.06 0.41 6.75 -2.39 -0.02 0.40 16 34 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.03 0.35 6.51 -2.39 -0.02 0.34 16 36 H 0.08 0.76 6.13 -2.39 -0.01 0.75 16 37 H 0.06 0.81 6.47 -2.39 -0.02 0.79 16 38 H 0.05 0.46 6.94 -2.39 -0.02 0.45 16 39 H 0.09 0.77 8.00 -2.39 -0.02 0.75 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.05 1.03 6.55 -2.39 -0.02 1.01 16 42 H 0.42 3.58 8.45 -92.71 -0.78 2.79 16 43 H 0.16 2.18 6.07 -2.91 -0.02 2.16 16 44 H 0.12 3.27 7.52 -2.91 -0.02 3.25 16 45 H 0.17 2.97 6.16 -2.91 -0.02 2.95 16 46 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 47 H 0.29 15.30 8.31 -92.71 -0.77 14.53 16 48 H 0.11 5.27 5.62 -2.91 -0.02 5.26 16 49 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -70.32 395.35 1.85 -68.46 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.19 Total: 20.43 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 6.50 Total: -25.13 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -6.55 Total: -77.53 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.25 Total: -31.90 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.96 Total: 45.67 kcal Total: -70.32 1.85 -68.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112928852.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.689 kcal (2) G-P(sol) polarization free energy of solvation -70.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds