Wall clock time and date at job start Tue Mar 31 2020 16:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47494 * 2 1 4 4 N 1.46501 * 109.47596 * 179.97438 * 3 2 1 5 5 C 1.46504 * 119.99928 * 84.99799 * 4 3 2 6 6 C 1.53002 * 109.46774 * 64.10709 * 5 4 3 7 7 C 1.52997 * 109.46899 * 63.55235 * 6 5 4 8 8 C 1.53002 * 109.46899 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46912 * 299.99636 * 8 7 6 10 10 C 1.53004 * 109.46907 * 59.99987 * 9 8 7 11 11 C 1.52996 * 109.47429 * 300.00043 * 10 9 8 12 12 S 1.65593 * 120.00050 * 265.00294 * 4 3 2 13 13 O 1.42104 * 106.40462 * 29.56343 * 12 4 3 14 14 O 1.42104 * 106.40160 * 162.47900 * 12 4 3 15 15 N 1.65598 * 107.21740 * 276.02128 * 12 4 3 16 16 C 1.46504 * 120.00038 * 262.30109 * 15 12 4 17 17 C 1.46498 * 120.00217 * 82.30892 * 15 12 4 18 18 C 1.50695 * 109.47437 * 94.99406 * 17 15 12 19 19 H 1.08000 * 120.00451 * 0.02562 * 18 17 15 20 20 C 1.37885 * 120.00110 * 179.97438 * 18 17 15 21 21 N 1.31517 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00143 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47157 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47103 * 120.00559 * 22 20 18 25 25 H 1.48503 * 109.47684 * 240.00511 * 22 20 18 26 26 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46641 * 300.00107 * 1 2 3 28 28 H 1.09000 * 109.47070 * 59.99583 * 1 2 3 29 29 H 1.08998 * 109.46812 * 239.99795 * 2 1 3 30 30 H 1.09000 * 109.47070 * 120.00417 * 2 1 3 31 31 H 1.08998 * 109.47258 * 60.00068 * 3 2 1 32 32 H 1.09000 * 109.47302 * 300.00275 * 3 2 1 33 33 H 1.09007 * 109.46800 * 304.10931 * 5 4 3 34 34 H 1.08998 * 109.46993 * 184.10755 * 5 4 3 35 35 H 1.08994 * 109.47181 * 303.54721 * 6 5 4 36 36 H 1.09001 * 109.47029 * 299.99214 * 7 6 5 37 37 H 1.08994 * 109.47624 * 59.99758 * 7 6 5 38 38 H 1.09000 * 109.47395 * 180.02562 * 8 7 6 39 39 H 1.09004 * 109.47360 * 59.99587 * 8 7 6 40 40 H 1.09003 * 109.47571 * 300.00282 * 9 8 7 41 41 H 1.09001 * 109.47265 * 179.97438 * 9 8 7 42 42 H 1.08998 * 109.46948 * 179.97438 * 10 9 8 43 43 H 1.09004 * 109.47140 * 60.00187 * 10 9 8 44 44 H 1.09004 * 109.47077 * 300.00183 * 11 10 9 45 45 H 1.09000 * 109.46924 * 180.02562 * 11 10 9 46 46 H 1.09004 * 109.46650 * 95.38276 * 16 15 12 47 47 H 1.08994 * 109.47285 * 215.38515 * 16 15 12 48 48 H 1.08996 * 109.47205 * 335.38945 * 16 15 12 49 49 H 1.08996 * 109.47247 * 215.00355 * 17 15 12 50 50 H 1.09006 * 109.46773 * 334.99559 * 17 15 12 51 51 H 0.96996 * 120.00128 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2382 1.3316 -1.2630 6 6 3.9479 2.5583 -2.1301 7 6 4.4731 3.8134 -1.4303 8 6 4.1823 5.0401 -2.2971 9 6 4.8762 4.8835 -3.6517 10 6 4.3510 3.6283 -4.3516 11 6 4.6417 2.4016 -3.4847 12 16 4.3325 1.5676 1.4296 13 8 3.5059 0.9796 2.4247 14 8 5.6590 1.1324 1.1646 15 7 4.4337 3.1789 1.7979 16 6 5.6473 3.9307 1.4688 17 6 3.3098 3.8526 2.4530 18 6 3.5318 3.8662 3.9434 19 1 4.4214 3.4183 4.3610 20 6 2.5998 4.4516 4.7740 21 7 1.5167 4.9975 4.2655 22 14 2.8753 4.4691 6.6214 23 1 4.1608 3.7955 6.9366 24 1 2.9221 5.8735 7.1016 25 1 1.7625 3.7526 7.2948 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 3.9209 0.4313 -1.7893 34 1 5.3074 1.2756 -1.0590 35 1 2.8724 2.6499 -2.2817 36 1 3.9784 3.9253 -0.4655 37 1 5.5486 3.7218 -1.2787 38 1 4.5568 5.9343 -1.7988 39 1 3.1067 5.1316 -2.4483 40 1 5.9518 4.7920 -3.5007 41 1 4.6686 5.7572 -4.2695 42 1 4.8450 3.5169 -5.3168 43 1 3.2754 3.7197 -4.5027 44 1 5.7174 2.3102 -3.3336 45 1 4.2680 1.5074 -3.9836 46 1 5.5158 4.4308 0.5092 47 1 5.8353 4.6742 2.2433 48 1 6.4936 3.2465 1.4089 49 1 3.2368 4.8767 2.0870 50 1 2.3858 3.3198 2.2281 51 1 0.8608 5.4090 4.8497 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126395794.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:53 Heat of formation + Delta-G solvation = -105.162451 kcal Electronic energy + Delta-G solvation = -29729.157278 eV Core-core repulsion = 25982.157793 eV Total energy + Delta-G solvation = -3746.999485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.04360 -36.75320 -36.38913 -35.49733 -35.10102 -33.13936 -32.43672 -30.93523 -30.57081 -27.75210 -26.55096 -25.06687 -24.56483 -22.55525 -22.25233 -21.72022 -20.83648 -19.60157 -18.33713 -17.32458 -16.68577 -16.32685 -16.01245 -15.51457 -14.94330 -14.63464 -14.39187 -14.31599 -14.19042 -13.94837 -13.56225 -13.34608 -13.28205 -12.57408 -12.41421 -12.36544 -12.27221 -12.18221 -11.89666 -11.85837 -11.67411 -11.61004 -11.32354 -11.19647 -11.18247 -11.11245 -11.08505 -11.03485 -10.80341 -10.67428 -10.58467 -10.49607 -10.22718 -10.17203 -10.00134 -9.92267 -9.69236 -8.73801 -8.43199 -7.99683 -6.06229 -4.09269 1.23970 3.31300 3.39051 3.44407 3.50458 4.10144 4.45600 4.60538 4.69309 4.74719 4.94361 5.00709 5.15779 5.20859 5.23826 5.28543 5.33371 5.38494 5.44228 5.50348 5.52558 5.55891 5.62989 5.66942 5.70801 5.81527 5.82092 5.92693 5.96174 6.00734 6.03129 6.08440 6.12433 6.16215 6.19615 6.23655 6.31276 6.33436 6.43590 6.44441 6.50653 6.57084 6.59564 6.90727 7.22073 7.41639 7.62704 7.92261 8.21506 8.93596 9.55915 11.02262 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.004676 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.791753 B = 5986.655671 C = 6808.363098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.124 3.876 4 N -1.007 6.007 5 C 0.122 3.878 6 C -0.103 4.103 7 C -0.129 4.129 8 C -0.116 4.116 9 C -0.120 4.120 10 C -0.117 4.117 11 C -0.112 4.112 12 S 2.777 3.223 13 O -0.961 6.961 14 O -1.000 7.000 15 N -0.995 5.995 16 C 0.086 3.914 17 C 0.260 3.740 18 C -0.524 4.524 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.897 5.897 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.282 1.282 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.049 0.951 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.034 0.966 50 H 0.033 0.967 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.847 -3.437 -17.583 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C -0.001 4.001 4 N -0.844 5.844 5 C -0.004 4.004 6 C -0.123 4.123 7 C -0.166 4.166 8 C -0.154 4.154 9 C -0.157 4.157 10 C -0.154 4.154 11 C -0.151 4.151 12 S 2.786 3.214 13 O -0.945 6.945 14 O -0.984 6.984 15 N -0.838 5.838 16 C -0.060 4.060 17 C 0.138 3.862 18 C -0.564 4.564 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.536 5.536 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.208 1.208 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.091 0.909 48 H 0.084 0.916 49 H 0.052 0.948 50 H 0.051 0.949 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.036 -4.056 -17.006 17.744 hybrid contribution -0.183 0.459 0.818 0.956 sum 2.853 -3.597 -16.188 16.826 Atomic orbital electron populations 1.21690 0.95374 1.01553 1.02076 1.21939 0.96089 0.97690 1.02504 1.21314 0.78578 0.96816 1.03427 1.58186 1.14892 1.88757 1.22560 1.21349 0.97126 0.97419 0.84516 1.21541 1.00826 0.95343 0.94547 1.21923 1.01244 0.93758 0.99721 1.21489 1.00509 0.98091 0.95309 1.21551 1.00197 0.97381 0.96578 1.21499 1.00981 0.94912 0.98026 1.21524 1.00745 0.97716 0.95077 1.02124 0.72733 0.73719 0.72818 1.93626 1.69248 1.75554 1.56022 1.93491 1.37688 1.81356 1.85848 1.57655 1.24359 1.28913 1.72829 1.21573 0.86376 0.97392 1.00703 1.19019 0.81841 0.93245 0.92139 1.21531 1.06463 1.36772 0.91611 0.92159 1.24913 0.94919 0.95123 0.99028 1.69921 1.10064 1.38298 1.35334 0.86482 0.78452 0.77517 0.85243 1.19662 1.21025 1.20829 0.92832 0.92050 0.92923 0.92181 0.91035 0.89570 0.90830 0.91477 0.89082 0.90687 0.90078 0.91795 0.91985 0.92146 0.92122 0.92495 0.92404 0.92182 0.91818 0.92106 0.93259 0.90871 0.91604 0.94774 0.94931 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.14 -1.92 6.26 -26.73 -0.17 -2.09 16 3 C 0.12 1.81 5.23 -4.04 -0.02 1.79 16 4 N -1.01 -15.55 2.34 -114.38 -0.27 -15.82 16 5 C 0.12 1.53 5.29 -4.04 -0.02 1.51 16 6 C -0.10 -1.12 2.18 -90.62 -0.20 -1.32 16 7 C -0.13 -1.57 3.59 -26.73 -0.10 -1.67 16 8 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 9 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 10 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 11 C -0.11 -1.02 5.20 -26.73 -0.14 -1.16 16 12 S 2.78 55.73 5.94 -107.50 -0.64 55.09 16 13 O -0.96 -23.07 16.43 -57.17 -0.94 -24.01 16 14 O -1.00 -20.72 14.95 -57.17 -0.85 -21.57 16 15 N -1.00 -20.37 2.22 -123.06 -0.27 -20.64 16 16 C 0.09 1.49 10.14 59.85 0.61 2.09 16 17 C 0.26 6.32 5.10 -5.20 -0.03 6.30 16 18 C -0.52 -14.59 9.38 -34.44 -0.32 -14.91 16 19 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 21 N -0.90 -25.76 13.29 55.43 0.74 -25.02 16 22 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.12 7.98 -51.93 -0.41 0.70 16 31 H 0.09 1.48 6.41 -51.93 -0.33 1.14 16 32 H 0.07 0.90 6.60 -51.93 -0.34 0.56 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.22 6.72 -51.93 -0.35 0.87 16 35 H 0.07 0.82 6.71 -51.93 -0.35 0.48 16 36 H 0.08 1.17 5.45 -51.93 -0.28 0.89 16 37 H 0.06 0.78 7.27 -51.93 -0.38 0.40 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.05 0.72 4.78 -51.93 -0.25 0.47 16 47 H 0.07 1.30 8.11 -51.93 -0.42 0.87 16 48 H 0.07 1.09 6.86 -51.93 -0.36 0.74 16 49 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 50 H 0.03 0.83 6.45 -51.93 -0.34 0.50 16 51 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 394.96 15.07 5.95 5.95 Total: -1.00 -31.72 394.96 -11.17 -42.88 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -9.27 Total: -0.65 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -0.59 Total: -13.05 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.20 Total: -61.48 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -1.79 Total: -45.58 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 55.73 SS G_CDS: -0.64 Total: 55.09 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.72 -11.17 -42.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126395794.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.281 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds