Wall clock time and date at job start Tue Mar 31 2020 16:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47494 * 2 1 4 4 N 1.46501 * 109.47596 * 179.97438 * 3 2 1 5 5 C 1.46504 * 119.99928 * 84.99799 * 4 3 2 6 6 C 1.53002 * 109.46774 * 64.10709 * 5 4 3 7 7 C 1.52997 * 109.46899 * 63.55235 * 6 5 4 8 8 C 1.53002 * 109.46899 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46912 * 299.99636 * 8 7 6 10 10 C 1.53004 * 109.46907 * 59.99987 * 9 8 7 11 11 C 1.52996 * 109.47429 * 300.00043 * 10 9 8 12 12 S 1.65593 * 120.00050 * 265.00294 * 4 3 2 13 13 O 1.42104 * 106.40462 * 29.56343 * 12 4 3 14 14 O 1.42104 * 106.40160 * 162.47900 * 12 4 3 15 15 N 1.65598 * 107.21740 * 276.02128 * 12 4 3 16 16 C 1.46504 * 120.00038 * 262.30109 * 15 12 4 17 17 C 1.46498 * 120.00217 * 82.30892 * 15 12 4 18 18 C 1.50695 * 109.47437 * 94.99406 * 17 15 12 19 19 H 1.08000 * 120.00451 * 0.02562 * 18 17 15 20 20 C 1.37885 * 120.00110 * 179.97438 * 18 17 15 21 21 N 1.31517 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00143 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47157 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47103 * 120.00559 * 22 20 18 25 25 H 1.48503 * 109.47684 * 240.00511 * 22 20 18 26 26 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46641 * 300.00107 * 1 2 3 28 28 H 1.09000 * 109.47070 * 59.99583 * 1 2 3 29 29 H 1.08998 * 109.46812 * 239.99795 * 2 1 3 30 30 H 1.09000 * 109.47070 * 120.00417 * 2 1 3 31 31 H 1.08998 * 109.47258 * 60.00068 * 3 2 1 32 32 H 1.09000 * 109.47302 * 300.00275 * 3 2 1 33 33 H 1.09007 * 109.46800 * 304.10931 * 5 4 3 34 34 H 1.08998 * 109.46993 * 184.10755 * 5 4 3 35 35 H 1.08994 * 109.47181 * 303.54721 * 6 5 4 36 36 H 1.09001 * 109.47029 * 299.99214 * 7 6 5 37 37 H 1.08994 * 109.47624 * 59.99758 * 7 6 5 38 38 H 1.09000 * 109.47395 * 180.02562 * 8 7 6 39 39 H 1.09004 * 109.47360 * 59.99587 * 8 7 6 40 40 H 1.09003 * 109.47571 * 300.00282 * 9 8 7 41 41 H 1.09001 * 109.47265 * 179.97438 * 9 8 7 42 42 H 1.08998 * 109.46948 * 179.97438 * 10 9 8 43 43 H 1.09004 * 109.47140 * 60.00187 * 10 9 8 44 44 H 1.09004 * 109.47077 * 300.00183 * 11 10 9 45 45 H 1.09000 * 109.46924 * 180.02562 * 11 10 9 46 46 H 1.09004 * 109.46650 * 95.38276 * 16 15 12 47 47 H 1.08994 * 109.47285 * 215.38515 * 16 15 12 48 48 H 1.08996 * 109.47205 * 335.38945 * 16 15 12 49 49 H 1.08996 * 109.47247 * 215.00355 * 17 15 12 50 50 H 1.09006 * 109.46773 * 334.99559 * 17 15 12 51 51 H 0.96996 * 120.00128 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2382 1.3316 -1.2630 6 6 3.9479 2.5583 -2.1301 7 6 4.4731 3.8134 -1.4303 8 6 4.1823 5.0401 -2.2971 9 6 4.8762 4.8835 -3.6517 10 6 4.3510 3.6283 -4.3516 11 6 4.6417 2.4016 -3.4847 12 16 4.3325 1.5676 1.4296 13 8 3.5059 0.9796 2.4247 14 8 5.6590 1.1324 1.1646 15 7 4.4337 3.1789 1.7979 16 6 5.6473 3.9307 1.4688 17 6 3.3098 3.8526 2.4530 18 6 3.5318 3.8662 3.9434 19 1 4.4214 3.4183 4.3610 20 6 2.5998 4.4516 4.7740 21 7 1.5167 4.9975 4.2655 22 14 2.8753 4.4691 6.6214 23 1 4.1608 3.7955 6.9366 24 1 2.9221 5.8735 7.1016 25 1 1.7625 3.7526 7.2948 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 3.9209 0.4313 -1.7893 34 1 5.3074 1.2756 -1.0590 35 1 2.8724 2.6499 -2.2817 36 1 3.9784 3.9253 -0.4655 37 1 5.5486 3.7218 -1.2787 38 1 4.5568 5.9343 -1.7988 39 1 3.1067 5.1316 -2.4483 40 1 5.9518 4.7920 -3.5007 41 1 4.6686 5.7572 -4.2695 42 1 4.8450 3.5169 -5.3168 43 1 3.2754 3.7197 -4.5027 44 1 5.7174 2.3102 -3.3336 45 1 4.2680 1.5074 -3.9836 46 1 5.5158 4.4308 0.5092 47 1 5.8353 4.6742 2.2433 48 1 6.4936 3.2465 1.4089 49 1 3.2368 4.8767 2.0870 50 1 2.3858 3.3198 2.2281 51 1 0.8608 5.4090 4.8497 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126395794.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:52 Heat of formation + Delta-G solvation = -123.515051 kcal Electronic energy + Delta-G solvation = -29729.953106 eV Core-core repulsion = 25982.157793 eV Total energy + Delta-G solvation = -3747.795313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.95667 -38.38001 -37.54247 -37.22836 -36.82264 -34.51496 -34.15416 -31.83694 -31.46010 -29.64354 -27.58223 -26.80697 -25.64929 -24.19012 -23.33707 -22.74280 -21.80266 -20.47561 -19.81564 -18.98468 -18.33873 -18.23222 -17.45596 -16.66342 -16.45626 -16.00700 -15.68738 -15.35576 -15.09287 -15.03112 -14.88917 -14.80133 -14.45364 -14.08303 -14.02324 -13.65825 -13.49364 -13.35347 -13.23673 -13.16121 -13.07794 -12.94356 -12.79969 -12.67351 -12.59103 -12.47667 -12.40137 -12.30022 -12.20945 -11.98080 -11.91828 -11.78993 -11.64233 -11.46675 -11.23403 -11.01490 -10.76926 -10.59343 -9.93129 -9.70630 -8.20583 -6.31299 -0.33602 1.36465 1.39169 1.50543 2.02036 2.39125 2.56347 3.10095 3.39681 3.67705 3.84766 3.92184 4.00617 4.08741 4.14161 4.20978 4.34348 4.40791 4.46349 4.54136 4.57804 4.65018 4.66463 4.72533 4.73894 4.78148 4.82477 4.88139 4.91484 4.96781 5.00498 5.06319 5.15053 5.16699 5.21593 5.27645 5.32831 5.34435 5.38888 5.41431 5.43556 5.49325 5.50640 5.54830 5.67000 5.69949 5.75379 5.98365 6.12085 6.76402 7.37113 8.86759 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.004676 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.791753 B = 5986.655671 C = 6808.363098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.123 3.877 4 N -0.996 5.996 5 C 0.115 3.885 6 C -0.096 4.096 7 C -0.133 4.133 8 C -0.115 4.115 9 C -0.117 4.117 10 C -0.114 4.114 11 C -0.109 4.109 12 S 2.786 3.214 13 O -1.008 7.008 14 O -1.008 7.008 15 N -1.000 6.000 16 C 0.083 3.917 17 C 0.278 3.722 18 C -0.546 4.546 19 H 0.047 0.953 20 C 0.016 3.984 21 N -0.922 5.922 22 Si 0.952 3.048 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.279 1.279 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.026 0.974 50 H 0.017 0.983 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.991 -3.700 -19.823 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.002 4.002 4 N -0.836 5.836 5 C -0.009 4.009 6 C -0.116 4.116 7 C -0.171 4.171 8 C -0.153 4.153 9 C -0.155 4.155 10 C -0.152 4.152 11 C -0.147 4.147 12 S 2.796 3.204 13 O -0.991 6.991 14 O -0.993 6.993 15 N -0.841 5.841 16 C -0.063 4.063 17 C 0.155 3.845 18 C -0.585 4.585 19 H 0.065 0.935 20 C -0.184 4.184 21 N -0.562 5.562 22 Si 0.777 3.223 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.205 1.205 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.044 0.956 50 H 0.035 0.965 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.208 -4.312 -19.251 19.987 hybrid contribution -0.209 0.528 1.436 1.544 sum 3.000 -3.784 -17.815 18.457 Atomic orbital electron populations 1.21683 0.94036 1.02557 1.02164 1.21932 0.97275 0.96534 1.02284 1.21416 0.77747 0.97818 1.03222 1.57810 1.15244 1.88340 1.22180 1.21665 0.96450 0.99562 0.83241 1.21498 1.01274 0.93653 0.95166 1.21914 1.00877 0.95279 0.98988 1.21468 1.00532 0.97123 0.96147 1.21536 1.00018 0.98335 0.95576 1.21492 1.01242 0.94027 0.98399 1.21511 1.00581 0.98779 0.93798 1.01593 0.72320 0.73293 0.73235 1.93563 1.70236 1.76543 1.58784 1.93467 1.38255 1.81405 1.86127 1.57529 1.24359 1.28985 1.73210 1.21742 0.85390 0.97317 1.01809 1.18558 0.82526 0.92704 0.90748 1.21841 1.06193 1.36854 0.93635 0.93470 1.25659 0.94734 0.94803 1.03182 1.69997 1.10618 1.38723 1.36815 0.85608 0.78190 0.78185 0.80340 1.19758 1.19443 1.20454 0.91397 0.94058 0.90735 0.89574 0.93985 0.92914 0.87799 0.88727 0.89808 0.90257 0.92706 0.91955 0.92685 0.92438 0.92049 0.91651 0.90924 0.91997 0.91767 0.90442 0.90530 0.91660 0.90842 0.95591 0.96544 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.91 71.98 0.71 -2.56 16 2 C -0.14 -3.66 6.26 30.59 0.19 -3.47 16 3 C 0.12 3.54 5.23 86.38 0.45 4.00 16 4 N -1.00 -30.33 2.34 -515.77 -1.21 -31.54 16 5 C 0.12 2.66 5.29 86.38 0.46 3.12 16 6 C -0.10 -1.88 2.18 -10.79 -0.02 -1.90 16 7 C -0.13 -3.09 3.59 30.59 0.11 -2.98 16 8 C -0.12 -2.34 5.92 30.60 0.18 -2.16 16 9 C -0.12 -1.87 5.92 30.60 0.18 -1.69 16 10 C -0.11 -1.58 5.92 30.59 0.18 -1.39 16 11 C -0.11 -1.61 5.20 30.59 0.16 -1.45 16 12 S 2.79 114.38 5.94 -56.49 -0.34 114.05 16 13 O -1.01 -50.53 16.43 -128.00 -2.10 -52.63 16 14 O -1.01 -41.97 14.95 -128.00 -1.91 -43.88 16 15 N -1.00 -42.10 2.22 -543.24 -1.21 -43.31 16 16 C 0.08 2.89 10.14 127.77 1.30 4.19 16 17 C 0.28 14.09 5.10 85.63 0.44 14.53 16 18 C -0.55 -31.30 9.38 25.60 0.24 -31.06 16 19 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 20 C 0.02 0.90 5.46 84.66 0.46 1.36 16 21 N -0.92 -53.81 13.29 21.45 0.28 -53.53 16 22 Si 0.95 45.23 29.54 68.60 2.03 47.25 16 23 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.34 7.98 -2.39 -0.02 1.32 16 31 H 0.05 1.89 6.41 -2.39 -0.02 1.88 16 32 H 0.10 2.34 6.60 -2.39 -0.02 2.33 16 33 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.08 2.10 6.72 -2.39 -0.02 2.08 16 35 H 0.08 1.51 6.71 -2.39 -0.02 1.49 16 36 H 0.05 1.57 5.45 -2.39 -0.01 1.56 16 37 H 0.06 1.44 7.27 -2.39 -0.02 1.42 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 2.23 4.78 -2.39 -0.01 2.22 16 47 H 0.06 2.36 8.11 -2.39 -0.02 2.34 16 48 H 0.07 2.44 6.86 -2.39 -0.02 2.42 16 49 H 0.03 1.34 8.11 -2.39 -0.02 1.32 16 50 H 0.02 0.89 6.45 -2.38 -0.02 0.88 16 51 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -69.72 394.96 1.46 -68.26 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.88 Total: 16.82 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 5.04 Total: -21.48 kcal Atomic # 7 Polarization: -126.25 SS G_CDS: -2.13 Total: -128.38 kcal Atomic # 8 Polarization: -92.50 SS G_CDS: -4.02 Total: -96.52 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: 114.38 SS G_CDS: -0.34 Total: 114.05 kcal Total: -69.72 1.46 -68.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126395794.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.253 kcal (2) G-P(sol) polarization free energy of solvation -69.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds