Wall clock time and date at job start Tue Mar 31 2020 17:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47466 * 2 1 4 4 N 1.46493 * 109.47313 * 179.97438 * 3 2 1 5 5 C 1.34781 * 120.00112 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99780 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99960 * 179.97438 * 5 4 3 8 8 C 1.53005 * 109.47051 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.46970 * 180.02562 * 8 7 5 10 10 O 1.21280 * 120.00341 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99760 * 179.72439 * 9 8 7 12 12 C 1.46500 * 120.00027 * 175.34956 * 11 9 8 13 13 H 1.08998 * 109.47554 * 38.56949 * 12 11 9 14 14 C 1.53000 * 109.47180 * 158.57509 * 12 11 9 15 15 C 1.50700 * 109.46897 * 294.52856 * 14 12 11 16 16 H 1.08001 * 119.99898 * 355.15357 * 15 14 12 17 17 C 1.37878 * 120.00052 * 175.14830 * 15 14 12 18 18 N 1.31513 * 119.99872 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99987 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46854 * 89.99624 * 19 17 15 21 21 H 1.48492 * 109.46992 * 209.99634 * 19 17 15 22 22 H 1.48496 * 109.47038 * 329.99731 * 19 17 15 23 23 C 1.50703 * 109.47107 * 278.57087 * 12 11 9 24 24 C 1.38234 * 119.99988 * 319.72676 * 23 12 11 25 25 C 1.38233 * 119.99945 * 179.78480 * 24 23 12 26 26 C 1.38233 * 120.00273 * 0.44618 * 25 24 23 27 27 C 1.38236 * 119.99674 * 359.80494 * 26 25 24 28 28 C 1.38231 * 119.99964 * 139.99976 * 23 12 11 29 29 H 1.09001 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46972 * 300.00186 * 1 2 3 31 31 H 1.09003 * 109.46716 * 60.00201 * 1 2 3 32 32 H 1.09000 * 109.47454 * 239.99219 * 2 1 3 33 33 H 1.09003 * 109.46716 * 119.99799 * 2 1 3 34 34 H 1.08999 * 109.46957 * 59.99452 * 3 2 1 35 35 H 1.09003 * 109.46989 * 299.99632 * 3 2 1 36 36 H 0.97002 * 120.00189 * 359.97438 * 4 3 2 37 37 H 1.09002 * 109.46879 * 60.00540 * 7 5 4 38 38 H 1.08996 * 109.47261 * 300.00006 * 7 5 4 39 39 H 1.08999 * 109.46882 * 59.99865 * 8 7 5 40 40 H 1.09009 * 109.46796 * 300.00177 * 8 7 5 41 41 H 0.97003 * 120.00049 * 355.34918 * 11 9 8 42 42 H 1.08999 * 109.47355 * 54.52944 * 14 12 11 43 43 H 1.09004 * 109.46907 * 174.53019 * 14 12 11 44 44 H 0.97002 * 120.00021 * 180.02562 * 18 17 15 45 45 H 1.08000 * 120.00092 * 0.02562 * 24 23 12 46 46 H 1.08000 * 120.00341 * 180.27636 * 25 24 23 47 47 H 1.07993 * 120.00573 * 179.83713 * 26 25 24 48 48 H 1.08002 * 120.00373 * 180.02562 * 27 26 25 49 49 H 1.07996 * 119.99947 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1790 2.6096 0.0002 6 8 3.5726 3.6599 -0.0002 7 6 5.6860 2.6095 0.0014 8 6 6.1961 4.0520 0.0013 9 6 7.7030 4.0519 0.0019 10 8 8.3094 3.0016 0.0028 11 7 8.3770 5.2191 -0.0037 12 6 9.8383 5.2217 0.0997 13 1 10.2449 4.3905 -0.4765 14 6 10.3862 6.5400 -0.4506 15 6 10.1009 6.6249 -1.9279 16 1 9.6515 5.7870 -2.4401 17 6 10.4137 7.7723 -2.6256 18 7 10.1652 7.8461 -3.9149 19 14 11.1916 9.2213 -1.7398 20 1 12.6703 9.0906 -1.7808 21 1 10.7876 10.4845 -2.4076 22 1 10.7354 9.2405 -0.3267 23 6 10.2399 5.0751 1.5448 24 6 9.5367 5.7444 2.5289 25 6 9.9023 5.6063 3.8549 26 6 10.9768 4.8063 4.1959 27 6 11.6832 4.1411 3.2113 28 6 11.3149 4.2757 1.8857 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8935 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6769 1.9563 -0.8900 36 1 3.9901 0.6023 0.0013 37 1 6.0500 2.0950 -0.8879 38 1 6.0486 2.0964 0.8921 39 1 5.8320 4.5662 0.8908 40 1 5.8334 4.5656 -0.8892 41 1 7.8944 6.0575 -0.0763 42 1 9.9064 7.3746 0.0607 43 1 11.4628 6.5832 -0.2853 44 1 10.3855 8.6532 -4.4059 45 1 8.6993 6.3721 2.2622 46 1 9.3502 6.1257 4.6242 47 1 11.2641 4.7005 5.2316 48 1 12.5224 3.5157 3.4777 49 1 11.8667 3.7560 1.1165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153434121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:22 Heat of formation + Delta-G solvation = -76.456018 kcal Electronic energy + Delta-G solvation = -27731.635820 eV Core-core repulsion = 23850.437189 eV Total energy + Delta-G solvation = -3881.198632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.05185 -39.51708 -38.42537 -36.09038 -35.32175 -33.08346 -32.69506 -32.46002 -31.10024 -30.54432 -29.31947 -27.20984 -25.43162 -24.15411 -22.33070 -21.99631 -21.77764 -20.64393 -19.93242 -19.63673 -17.50406 -17.13370 -16.45904 -16.28160 -16.24639 -15.94631 -15.59424 -15.40262 -14.92245 -14.36081 -14.33408 -14.08781 -13.85357 -13.35707 -13.25932 -13.09308 -12.92787 -12.85916 -12.62243 -12.44467 -12.41353 -12.32319 -11.98175 -11.70867 -11.53158 -11.37936 -11.29501 -11.14261 -11.05094 -10.73424 -10.66963 -10.12447 -9.93487 -9.84644 -9.40797 -9.30962 -9.28346 -8.64648 -8.60954 -8.47313 -8.29988 -6.11241 -4.11147 1.67023 1.70108 2.56343 2.95562 3.12632 3.25979 3.34279 3.35965 3.77272 4.15032 4.37834 4.43610 4.56324 4.65429 4.81407 5.02053 5.12009 5.16905 5.18431 5.21744 5.22714 5.23659 5.25559 5.35411 5.41739 5.46941 5.60615 5.69746 5.71375 5.80706 5.81249 5.83176 5.91611 6.00997 6.05417 6.23550 6.23988 6.30905 6.43241 6.73337 6.75646 6.82460 6.92811 7.06341 7.29225 7.30040 7.34838 7.64766 8.08969 8.11446 8.43739 8.75206 8.94341 9.49403 11.01505 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009977 B = 0.002755 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.651186 B =10162.095741 C =12232.676921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.117 3.883 4 N -0.736 5.736 5 C 0.513 3.487 6 O -0.540 6.540 7 C -0.122 4.122 8 C -0.126 4.126 9 C 0.514 3.486 10 O -0.554 6.554 11 N -0.701 5.701 12 C 0.194 3.806 13 H 0.090 0.910 14 C -0.015 4.015 15 C -0.520 4.520 16 H 0.076 0.924 17 C 0.070 3.930 18 N -0.897 5.897 19 Si 0.875 3.125 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.076 4.076 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.134 4.134 27 C -0.123 4.123 28 C -0.107 4.107 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.402 0.598 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.404 0.596 42 H 0.026 0.974 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.117 0.883 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.742 -13.024 13.088 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.389 5.389 5 C 0.301 3.699 6 O -0.417 6.417 7 C -0.162 4.162 8 C -0.166 4.166 9 C 0.300 3.700 10 O -0.433 6.433 11 N -0.350 5.350 12 C 0.090 3.910 13 H 0.108 0.892 14 C -0.053 4.053 15 C -0.558 4.558 16 H 0.094 0.906 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.703 3.297 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.077 4.077 24 C -0.128 4.128 25 C -0.143 4.143 26 C -0.152 4.152 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.236 0.764 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.238 0.762 42 H 0.044 0.956 43 H 0.047 0.953 44 H 0.074 0.926 45 H 0.136 0.864 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.135 0.865 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.742 -12.862 12.924 21.687 hybrid contribution 0.456 0.874 0.268 1.022 sum -11.286 -11.988 13.192 21.098 Atomic orbital electron populations 1.21683 0.94573 1.02137 1.02381 1.21744 0.96995 0.95917 1.02787 1.21390 0.79809 0.97041 1.02448 1.46047 1.07279 1.08978 1.76617 1.20867 0.90501 0.83398 0.75171 1.90711 1.70696 1.31248 1.49050 1.21351 0.90270 0.98788 1.05840 1.21357 0.92370 0.97165 1.05740 1.20477 0.89618 0.84099 0.75838 1.90646 1.70574 1.31366 1.50702 1.45904 1.07611 1.08503 1.72934 1.19931 0.79596 1.01875 0.89617 0.89163 1.19890 0.96693 0.91156 0.97557 1.21011 1.41749 1.02053 0.91001 0.90616 1.24993 0.95091 0.98381 0.94682 1.69905 1.47889 1.28412 1.07374 0.86856 0.80108 0.82378 0.80408 1.20241 1.21347 1.18918 1.20586 0.95157 0.95305 0.96699 1.20954 0.99942 0.99391 0.92479 1.21060 0.97665 0.99461 0.96143 1.21018 0.96714 0.98606 0.98851 1.21063 0.99891 1.00059 0.93078 1.21040 0.97048 0.98281 0.96200 0.92195 0.92357 0.92293 0.91226 0.91300 0.91582 0.91491 0.76424 0.87964 0.88207 0.88533 0.88080 0.76168 0.95611 0.95342 0.92623 0.86415 0.86661 0.86775 0.86517 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.14 -0.75 6.05 -26.73 -0.16 -0.91 16 3 C 0.12 0.96 5.67 -4.05 -0.02 0.93 16 4 N -0.74 -6.55 5.56 -60.30 -0.33 -6.88 16 5 C 0.51 6.22 7.83 -10.98 -0.09 6.14 16 6 O -0.54 -8.54 15.98 5.56 0.09 -8.45 16 7 C -0.12 -1.44 4.99 -27.88 -0.14 -1.58 16 8 C -0.13 -1.72 4.99 -27.88 -0.14 -1.86 16 9 C 0.51 8.76 7.73 -10.99 -0.08 8.68 16 10 O -0.55 -10.94 15.68 5.56 0.09 -10.86 16 11 N -0.70 -12.42 4.09 -54.93 -0.22 -12.64 16 12 C 0.19 3.81 2.11 -69.08 -0.15 3.66 16 13 H 0.09 1.96 7.49 -51.93 -0.39 1.57 16 14 C -0.02 -0.34 3.56 -27.88 -0.10 -0.44 16 15 C -0.52 -13.92 9.40 -34.44 -0.32 -14.24 16 16 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 19 Si 0.88 20.90 27.57 -169.99 -4.69 16.22 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.26 -6.02 6.40 56.52 0.36 -5.66 16 23 C -0.08 -1.34 4.86 -104.62 -0.51 -1.85 16 24 C -0.11 -1.74 9.32 -39.58 -0.37 -2.11 16 25 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 26 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 27 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 28 C -0.11 -1.76 9.67 -39.58 -0.38 -2.14 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 2.51 8.47 -40.82 -0.35 2.17 16 37 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 38 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 39 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.10 1.42 8.10 -51.92 -0.42 0.99 16 41 H 0.40 6.67 8.57 -40.82 -0.35 6.32 16 42 H 0.03 0.57 6.86 -51.93 -0.36 0.21 16 43 H 0.03 0.64 7.81 -51.93 -0.41 0.24 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.12 1.75 7.73 -52.49 -0.41 1.34 16 46 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 48 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 49 H 0.12 1.90 8.04 -52.49 -0.42 1.48 16 LS Contribution 409.99 15.07 6.18 6.18 Total: -1.00 -33.95 409.99 -9.68 -43.63 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -8.18 Total: 9.54 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -3.39 Total: -10.69 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.21 Total: -45.57 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.18 Total: -19.30 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.69 Total: 16.22 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.95 -9.68 -43.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153434121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.826 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds