Wall clock time and date at job start Tue Mar 31 2020 17:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47466 * 2 1 4 4 N 1.46493 * 109.47313 * 179.97438 * 3 2 1 5 5 C 1.34781 * 120.00112 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99780 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99960 * 179.97438 * 5 4 3 8 8 C 1.53005 * 109.47051 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.46970 * 180.02562 * 8 7 5 10 10 O 1.21280 * 120.00341 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99760 * 179.72439 * 9 8 7 12 12 C 1.46500 * 120.00027 * 175.34956 * 11 9 8 13 13 H 1.08998 * 109.47554 * 38.56949 * 12 11 9 14 14 C 1.53000 * 109.47180 * 158.57509 * 12 11 9 15 15 C 1.50700 * 109.46897 * 294.52856 * 14 12 11 16 16 H 1.08001 * 119.99898 * 355.15357 * 15 14 12 17 17 C 1.37878 * 120.00052 * 175.14830 * 15 14 12 18 18 N 1.31513 * 119.99872 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99987 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46854 * 89.99624 * 19 17 15 21 21 H 1.48492 * 109.46992 * 209.99634 * 19 17 15 22 22 H 1.48496 * 109.47038 * 329.99731 * 19 17 15 23 23 C 1.50703 * 109.47107 * 278.57087 * 12 11 9 24 24 C 1.38234 * 119.99988 * 319.72676 * 23 12 11 25 25 C 1.38233 * 119.99945 * 179.78480 * 24 23 12 26 26 C 1.38233 * 120.00273 * 0.44618 * 25 24 23 27 27 C 1.38236 * 119.99674 * 359.80494 * 26 25 24 28 28 C 1.38231 * 119.99964 * 139.99976 * 23 12 11 29 29 H 1.09001 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46972 * 300.00186 * 1 2 3 31 31 H 1.09003 * 109.46716 * 60.00201 * 1 2 3 32 32 H 1.09000 * 109.47454 * 239.99219 * 2 1 3 33 33 H 1.09003 * 109.46716 * 119.99799 * 2 1 3 34 34 H 1.08999 * 109.46957 * 59.99452 * 3 2 1 35 35 H 1.09003 * 109.46989 * 299.99632 * 3 2 1 36 36 H 0.97002 * 120.00189 * 359.97438 * 4 3 2 37 37 H 1.09002 * 109.46879 * 60.00540 * 7 5 4 38 38 H 1.08996 * 109.47261 * 300.00006 * 7 5 4 39 39 H 1.08999 * 109.46882 * 59.99865 * 8 7 5 40 40 H 1.09009 * 109.46796 * 300.00177 * 8 7 5 41 41 H 0.97003 * 120.00049 * 355.34918 * 11 9 8 42 42 H 1.08999 * 109.47355 * 54.52944 * 14 12 11 43 43 H 1.09004 * 109.46907 * 174.53019 * 14 12 11 44 44 H 0.97002 * 120.00021 * 180.02562 * 18 17 15 45 45 H 1.08000 * 120.00092 * 0.02562 * 24 23 12 46 46 H 1.08000 * 120.00341 * 180.27636 * 25 24 23 47 47 H 1.07993 * 120.00573 * 179.83713 * 26 25 24 48 48 H 1.08002 * 120.00373 * 180.02562 * 27 26 25 49 49 H 1.07996 * 119.99947 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1790 2.6096 0.0002 6 8 3.5726 3.6599 -0.0002 7 6 5.6860 2.6095 0.0014 8 6 6.1961 4.0520 0.0013 9 6 7.7030 4.0519 0.0019 10 8 8.3094 3.0016 0.0028 11 7 8.3770 5.2191 -0.0037 12 6 9.8383 5.2217 0.0997 13 1 10.2449 4.3905 -0.4765 14 6 10.3862 6.5400 -0.4506 15 6 10.1009 6.6249 -1.9279 16 1 9.6515 5.7870 -2.4401 17 6 10.4137 7.7723 -2.6256 18 7 10.1652 7.8461 -3.9149 19 14 11.1916 9.2213 -1.7398 20 1 12.6703 9.0906 -1.7808 21 1 10.7876 10.4845 -2.4076 22 1 10.7354 9.2405 -0.3267 23 6 10.2399 5.0751 1.5448 24 6 9.5367 5.7444 2.5289 25 6 9.9023 5.6063 3.8549 26 6 10.9768 4.8063 4.1959 27 6 11.6832 4.1411 3.2113 28 6 11.3149 4.2757 1.8857 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8935 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6769 1.9563 -0.8900 36 1 3.9901 0.6023 0.0013 37 1 6.0500 2.0950 -0.8879 38 1 6.0486 2.0964 0.8921 39 1 5.8320 4.5662 0.8908 40 1 5.8334 4.5656 -0.8892 41 1 7.8944 6.0575 -0.0763 42 1 9.9064 7.3746 0.0607 43 1 11.4628 6.5832 -0.2853 44 1 10.3855 8.6532 -4.4059 45 1 8.6993 6.3721 2.2622 46 1 9.3502 6.1257 4.6242 47 1 11.2641 4.7005 5.2316 48 1 12.5224 3.5157 3.4777 49 1 11.8667 3.7560 1.1165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153434121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:21 Heat of formation + Delta-G solvation = -98.309416 kcal Electronic energy + Delta-G solvation = -27732.583455 eV Core-core repulsion = 23850.437189 eV Total energy + Delta-G solvation = -3882.146266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.25468 -40.65647 -39.66307 -36.92108 -36.76088 -34.68265 -34.07815 -33.39484 -32.41548 -31.68329 -30.97289 -28.13120 -26.79459 -25.32053 -23.58943 -23.25531 -22.57075 -21.85229 -21.19271 -20.92877 -19.06475 -18.61718 -17.76216 -17.28909 -17.18869 -17.05659 -16.81973 -16.45482 -16.21423 -16.01856 -15.39760 -15.36503 -14.98813 -14.66255 -14.41720 -14.23238 -14.16867 -13.94843 -13.83101 -13.76542 -13.52005 -13.31020 -13.11463 -13.04089 -12.82189 -12.54897 -12.41507 -12.17462 -12.03554 -11.91201 -11.75647 -11.73348 -11.70113 -11.41340 -10.95447 -10.87183 -10.74519 -10.12094 -9.96995 -9.75046 -9.53334 -8.28154 -6.32902 0.50184 0.56402 1.37285 1.38382 1.49135 1.59118 1.73409 2.04758 2.35434 2.51652 2.97504 3.07593 3.61021 3.90132 3.90981 4.02322 4.04048 4.06441 4.13512 4.16938 4.21799 4.33690 4.35666 4.41017 4.60049 4.64796 4.66342 4.73855 4.75605 4.77689 4.86181 4.87800 4.95557 5.04834 5.14908 5.15982 5.18926 5.24168 5.27640 5.33815 5.48696 5.55234 5.59344 5.65371 5.66306 5.88431 6.18479 6.25687 6.50367 6.68499 6.75418 7.20902 7.30791 7.35516 8.88135 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009977 B = 0.002755 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.651186 B =10162.095741 C =12232.676921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.115 3.885 4 N -0.721 5.721 5 C 0.515 3.485 6 O -0.581 6.581 7 C -0.115 4.115 8 C -0.117 4.117 9 C 0.512 3.488 10 O -0.583 6.583 11 N -0.702 5.702 12 C 0.205 3.795 13 H 0.056 0.944 14 C -0.007 4.007 15 C -0.518 4.518 16 H 0.031 0.969 17 C 0.010 3.990 18 N -0.948 5.948 19 Si 0.945 3.055 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.241 1.241 23 C -0.099 4.099 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.127 4.127 27 C -0.123 4.123 28 C -0.129 4.129 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.416 0.584 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.409 0.591 42 H 0.038 0.962 43 H 0.028 0.972 44 H 0.266 0.734 45 H 0.123 0.877 46 H 0.145 0.855 47 H 0.150 0.850 48 H 0.143 0.857 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.801 -13.226 16.485 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.009 4.009 4 N -0.374 5.374 5 C 0.303 3.697 6 O -0.461 6.461 7 C -0.156 4.156 8 C -0.157 4.157 9 C 0.300 3.700 10 O -0.464 6.464 11 N -0.351 5.351 12 C 0.099 3.901 13 H 0.075 0.925 14 C -0.044 4.044 15 C -0.556 4.556 16 H 0.050 0.950 17 C -0.187 4.187 18 N -0.588 5.588 19 Si 0.768 3.232 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.165 1.165 23 C -0.101 4.101 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.145 4.145 27 C -0.141 4.141 28 C -0.148 4.148 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.253 0.747 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.244 0.756 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.075 0.925 45 H 0.141 0.859 46 H 0.163 0.837 47 H 0.168 0.832 48 H 0.161 0.839 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.813 -13.114 16.339 24.051 hybrid contribution 0.460 0.811 -0.797 1.227 sum -11.353 -12.303 15.542 22.843 Atomic orbital electron populations 1.21699 0.94153 1.02811 1.02198 1.21698 0.97246 0.93914 1.03685 1.21478 0.79089 0.98859 1.01462 1.45963 1.07796 1.08765 1.74849 1.20850 0.90463 0.83617 0.74789 1.90696 1.71338 1.32789 1.51326 1.21290 0.90193 0.97537 1.06538 1.21306 0.89467 0.98796 1.06135 1.21024 0.90901 0.83294 0.74765 1.90624 1.71499 1.32237 1.52007 1.45911 1.07045 1.09156 1.72970 1.19537 0.80444 0.98919 0.91165 0.92548 1.19751 0.96858 0.93241 0.94570 1.21194 1.40584 1.00513 0.93313 0.95027 1.25911 0.95788 1.01676 0.95328 1.70063 1.49879 1.29517 1.09355 0.85747 0.79079 0.78168 0.80173 1.19749 1.21191 1.16452 1.20381 0.96730 0.97597 0.95359 1.21103 1.00081 0.99528 0.93207 1.21434 0.97813 0.99174 0.95778 1.21475 0.95650 0.96995 1.00382 1.21389 1.00568 1.00068 0.92043 1.21177 0.97203 0.98827 0.97577 0.91060 0.92441 0.92669 0.90483 0.90184 0.92369 0.92773 0.74674 0.87806 0.86968 0.87132 0.88550 0.75584 0.94409 0.95340 0.92550 0.85928 0.83683 0.83236 0.83880 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.59 16 2 C -0.13 -1.19 6.05 30.60 0.19 -1.00 16 3 C 0.11 1.79 5.67 86.38 0.49 2.28 16 4 N -0.72 -12.06 5.56 -463.07 -2.57 -14.63 16 5 C 0.52 12.25 7.83 87.66 0.69 12.93 16 6 O -0.58 -18.43 15.98 -3.03 -0.05 -18.48 16 7 C -0.12 -2.67 4.99 29.85 0.15 -2.52 16 8 C -0.12 -3.21 4.99 29.85 0.15 -3.06 16 9 C 0.51 17.93 7.73 87.65 0.68 18.61 16 10 O -0.58 -23.69 15.68 -3.03 -0.05 -23.74 16 11 N -0.70 -25.63 4.09 -446.10 -1.82 -27.46 16 12 C 0.20 8.28 2.11 44.25 0.09 8.38 16 13 H 0.06 2.62 7.49 -2.39 -0.02 2.60 16 14 C -0.01 -0.30 3.56 29.85 0.11 -0.19 16 15 C -0.52 -28.78 9.40 25.60 0.24 -28.54 16 16 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 17 C 0.01 0.58 5.47 84.66 0.46 1.05 16 18 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 19 Si 0.94 43.11 27.57 68.60 1.89 45.00 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.24 -10.02 6.40 99.48 0.64 -9.38 16 23 C -0.10 -3.47 4.86 -19.87 -0.10 -3.57 16 24 C -0.12 -3.63 9.32 22.27 0.21 -3.42 16 25 C -0.12 -3.03 10.05 22.27 0.22 -2.80 16 26 C -0.13 -2.88 10.05 22.27 0.22 -2.65 16 27 C -0.12 -3.14 10.05 22.27 0.22 -2.92 16 28 C -0.13 -4.18 9.67 22.27 0.22 -3.96 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.42 4.50 8.47 -92.71 -0.79 3.71 16 37 H 0.10 2.38 8.10 -2.39 -0.02 2.36 16 38 H 0.11 2.33 8.10 -2.39 -0.02 2.31 16 39 H 0.11 2.74 8.10 -2.39 -0.02 2.72 16 40 H 0.10 2.77 8.10 -2.38 -0.02 2.75 16 41 H 0.41 13.83 8.57 -92.71 -0.79 13.03 16 42 H 0.04 1.62 6.86 -2.39 -0.02 1.60 16 43 H 0.03 1.29 7.81 -2.39 -0.02 1.27 16 44 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 45 H 0.12 3.45 7.73 -2.91 -0.02 3.42 16 46 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 47 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 48 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 49 H 0.11 3.70 8.04 -2.91 -0.02 3.67 16 Total: -1.00 -76.23 409.99 1.94 -74.28 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -0.71 Total: 35.31 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 4.95 Total: -11.99 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -4.10 Total: -100.38 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -0.10 Total: -42.22 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.89 Total: 45.00 kcal Total: -76.23 1.94 -74.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153434121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.026 kcal (2) G-P(sol) polarization free energy of solvation -76.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds