Wall clock time and date at job start Tue Mar 31 2020 16:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46675 * 2 1 4 4 N 1.46907 * 109.46610 * 179.97438 * 3 2 1 5 5 C 1.46893 * 111.00438 * 293.95213 * 4 3 2 6 6 C 1.46908 * 110.99878 * 169.99928 * 4 3 2 7 7 C 1.53000 * 109.47123 * 287.90350 * 6 4 3 8 8 H 1.09004 * 110.91754 * 60.61548 * 7 6 4 9 9 C 1.55156 * 111.00186 * 296.71002 * 7 6 4 10 10 C 1.54323 * 102.94102 * 206.42482 * 9 7 6 11 11 N 1.47015 * 107.27226 * 22.19480 * 10 9 7 12 12 S 1.65606 * 125.64821 * 181.02157 * 11 10 9 13 13 O 1.42096 * 104.27580 * 333.95166 * 12 11 10 14 14 O 1.42101 * 104.27479 * 206.09479 * 12 11 10 15 15 C 1.81403 * 104.44755 * 90.02708 * 12 11 10 16 16 C 1.52999 * 109.46925 * 179.97438 * 15 12 11 17 17 C 1.53002 * 109.47183 * 179.97438 * 16 15 12 18 18 C 1.50703 * 109.47245 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99553 * 0.02562 * 18 17 16 20 20 C 1.37869 * 120.00053 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00129 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99963 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46980 * 90.00027 * 22 20 18 24 24 H 1.48495 * 109.47131 * 329.99850 * 22 20 18 25 25 H 1.48497 * 109.46995 * 210.00158 * 22 20 18 26 26 C 1.47424 * 108.70438 * 1.28665 * 11 10 9 27 27 H 1.08997 * 109.47307 * 59.99524 * 1 2 3 28 28 H 1.09000 * 109.47000 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47248 * 299.99614 * 1 2 3 30 30 H 1.09003 * 109.47248 * 240.00386 * 2 1 3 31 31 H 1.09004 * 109.47157 * 120.00108 * 2 1 3 32 32 H 1.09003 * 109.47453 * 60.00425 * 3 2 1 33 33 H 1.08997 * 109.47283 * 299.99581 * 3 2 1 34 34 H 1.08997 * 109.47332 * 302.16592 * 5 4 3 35 35 H 1.09008 * 109.46868 * 62.16286 * 5 4 3 36 36 H 1.08994 * 109.47340 * 182.15879 * 5 4 3 37 37 H 1.09000 * 109.47140 * 167.90083 * 6 4 3 38 38 H 1.09001 * 109.46830 * 47.89611 * 6 4 3 39 39 H 1.09001 * 110.71768 * 88.06427 * 9 7 6 40 40 H 1.08992 * 110.72399 * 324.79005 * 9 7 6 41 41 H 1.09007 * 109.88620 * 262.77499 * 10 9 7 42 42 H 1.09004 * 109.88458 * 141.61408 * 10 9 7 43 43 H 1.08996 * 109.47329 * 60.00121 * 15 12 11 44 44 H 1.09003 * 109.46675 * 299.99360 * 15 12 11 45 45 H 1.09008 * 109.47254 * 59.99848 * 16 15 12 46 46 H 1.09001 * 109.47232 * 300.00203 * 16 15 12 47 47 H 1.08996 * 109.46845 * 60.00379 * 17 16 15 48 48 H 1.08997 * 109.46886 * 300.00210 * 17 16 15 49 49 H 0.97001 * 120.00019 * 359.97438 * 21 20 18 50 50 H 1.08996 * 110.36750 * 94.47939 * 26 11 10 51 51 H 1.08998 * 110.37111 * 216.80683 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0349 0.8860 1.2542 6 6 4.0355 2.7932 -0.2375 7 6 3.8049 3.1800 -1.6998 8 1 2.7414 3.1812 -1.9389 9 6 4.5885 2.2402 -2.6538 10 6 4.8109 3.1213 -3.9011 11 7 4.7007 4.5227 -3.4708 12 16 4.8392 5.8480 -4.4542 13 8 5.6524 5.4021 -5.5308 14 8 5.2767 6.8844 -3.5860 15 6 3.1470 6.1674 -5.0244 16 6 3.1425 7.3842 -5.9518 17 6 1.7153 7.6532 -6.4333 18 6 1.7109 8.8514 -7.3473 19 1 2.6339 9.3689 -7.5636 20 6 0.5288 9.2868 -7.9075 21 7 -0.5952 8.6569 -7.6437 22 14 0.5233 10.7724 -9.0399 23 1 0.7346 10.3276 -10.4409 24 1 1.6138 11.6998 -8.6451 25 1 -0.7829 11.4707 -8.9340 26 6 4.4528 4.5531 -2.0179 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.6541 1.4638 2.0963 35 1 3.7171 -0.1521 1.3524 36 1 5.1238 0.9331 1.2439 37 1 5.1037 2.8100 -0.0213 38 1 3.5222 3.5028 0.4113 39 1 3.9940 1.3613 -2.9035 40 1 5.5416 1.9496 -2.2120 41 1 4.0498 2.9025 -4.6501 42 1 5.8031 2.9369 -4.3131 43 1 2.5051 6.3633 -4.1655 44 1 2.7753 5.2968 -5.5648 45 1 3.7845 7.1888 -6.8108 46 1 3.5141 8.2546 -5.4111 47 1 1.0730 7.8486 -5.5746 48 1 1.3442 6.7827 -6.9741 49 1 -0.5924 7.8857 -7.0554 50 1 5.3912 4.6672 -1.4753 51 1 3.7675 5.3627 -1.7668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173948402.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:56 Heat of formation + Delta-G solvation = -93.685993 kcal Electronic energy + Delta-G solvation = -27056.147656 eV Core-core repulsion = 23309.645827 eV Total energy + Delta-G solvation = -3746.501828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.41891 -37.62578 -36.95262 -35.79170 -34.92226 -33.77641 -32.28385 -31.59196 -29.62944 -27.49088 -27.40177 -26.47925 -23.51954 -23.08121 -22.42504 -21.41541 -20.86673 -20.27217 -18.83949 -17.65718 -17.02262 -16.64329 -16.13683 -15.94378 -15.65360 -15.61748 -14.83928 -14.53314 -14.37625 -13.99164 -13.76602 -13.62200 -13.45406 -13.34555 -13.21768 -13.06128 -12.62187 -12.32400 -12.18860 -12.05982 -12.04009 -11.94258 -11.86352 -11.71973 -11.58247 -11.45101 -11.39054 -11.19308 -11.12485 -10.98496 -10.81186 -10.77723 -10.68028 -10.14338 -10.09992 -9.82218 -9.05545 -8.73228 -8.57309 -8.37189 -6.41361 -4.11089 0.36261 2.71931 3.42861 3.43001 3.46461 3.62346 3.96414 4.10306 4.28107 4.43807 4.51694 4.53178 4.56291 4.66289 4.90255 4.98270 4.99760 5.04628 5.05496 5.07912 5.10614 5.13398 5.22187 5.22918 5.33026 5.36694 5.38185 5.42857 5.45556 5.53193 5.65343 5.68308 5.72492 5.77906 5.80513 5.83041 5.92400 5.95641 6.08625 6.12395 6.30390 6.31487 6.64745 6.65687 6.71382 7.26140 7.38172 8.13081 8.41330 8.82692 9.61268 10.99470 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.002431 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.314529 B =11515.560844 C =12975.772595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.050 3.950 4 N -0.540 5.540 5 C 0.023 3.977 6 C 0.064 3.936 7 C -0.098 4.098 8 H 0.086 0.914 9 C -0.106 4.106 10 C 0.116 3.884 11 N -1.017 6.017 12 S 2.617 3.383 13 O -0.956 6.956 14 O -0.957 6.957 15 C -0.612 4.612 16 C -0.098 4.098 17 C 0.017 3.983 18 C -0.606 4.606 19 H 0.052 0.948 20 C 0.015 3.985 21 N -0.913 5.913 22 Si 1.072 2.928 23 H -0.287 1.287 24 H -0.287 1.287 25 H -0.284 1.284 26 C 0.128 3.872 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.011 0.989 48 H 0.011 0.989 49 H 0.268 0.732 50 H 0.070 0.930 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.550 -19.399 18.962 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.077 4.077 4 N -0.263 5.263 5 C -0.125 4.125 6 C -0.065 4.065 7 C -0.118 4.118 8 H 0.104 0.896 9 C -0.144 4.144 10 C -0.010 4.010 11 N -0.854 5.854 12 S 2.714 3.286 13 O -0.947 6.947 14 O -0.948 6.948 15 C -0.743 4.743 16 C -0.138 4.138 17 C -0.021 4.021 18 C -0.645 4.645 19 H 0.071 0.929 20 C -0.189 4.189 21 N -0.549 5.549 22 Si 0.900 3.100 23 H -0.213 1.213 24 H -0.213 1.213 25 H -0.209 1.209 26 C 0.002 3.998 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.042 0.958 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.029 0.971 48 H 0.030 0.970 49 H 0.079 0.921 50 H 0.088 0.912 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.586 -18.218 17.425 26.326 hybrid contribution -0.057 -0.675 1.642 1.776 sum 7.528 -18.893 19.067 27.878 Atomic orbital electron populations 1.21751 0.95593 1.01828 1.01937 1.21525 0.95430 0.96296 1.02549 1.22265 0.87009 0.97389 1.01066 1.61953 1.07792 1.21951 1.34649 1.22418 1.00386 1.00136 0.89583 1.22060 1.00438 0.88804 0.95175 1.22453 1.00522 0.94294 0.94545 0.89591 1.22494 1.00730 0.97432 0.93790 1.21781 1.01780 0.79854 0.97537 1.58777 1.88713 1.19810 1.18079 1.04942 0.77985 0.72270 0.73397 1.93562 1.65198 1.80487 1.55425 1.93565 1.80084 1.55792 1.65330 1.30623 1.23219 1.09434 1.11067 1.21359 1.03442 0.92410 0.96578 1.19185 0.89683 0.97177 0.96035 1.22098 0.96590 1.14565 1.31226 0.92947 1.25894 0.92179 1.02307 0.98477 1.70767 1.27952 1.20566 1.35604 0.83496 0.75689 0.75074 0.75705 1.21340 1.21350 1.20935 1.21969 1.00123 0.97481 0.80265 0.92461 0.92531 0.92927 0.91107 0.92162 0.94923 0.90422 0.95757 0.91141 0.91431 0.90303 0.94240 0.89871 0.90665 0.91729 0.91103 0.85648 0.85570 0.91423 0.91441 0.97064 0.97048 0.92141 0.91160 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.72 5.86 -26.73 -0.16 -0.88 16 3 C 0.05 0.33 4.81 -3.82 -0.02 0.32 16 4 N -0.54 -3.63 4.46 -242.91 -1.08 -4.72 16 5 C 0.02 0.13 9.27 60.06 0.56 0.69 16 6 C 0.06 0.43 4.44 -3.82 -0.02 0.41 16 7 C -0.10 -0.76 3.00 -88.35 -0.27 -1.02 16 8 H 0.09 0.68 6.72 -51.93 -0.35 0.33 16 9 C -0.11 -0.82 6.17 -24.90 -0.15 -0.98 16 10 C 0.12 1.16 6.89 -3.07 -0.02 1.14 16 11 N -1.02 -12.06 3.62 -111.29 -0.40 -12.47 16 12 S 2.62 40.42 5.65 -107.50 -0.61 39.82 16 13 O -0.96 -17.42 17.60 -57.54 -1.01 -18.43 16 14 O -0.96 -17.30 17.60 -57.54 -1.01 -18.31 16 15 C -0.61 -9.73 6.18 37.16 0.23 -9.50 16 16 C -0.10 -2.06 5.16 -26.73 -0.14 -2.20 16 17 C 0.02 0.45 4.28 -27.88 -0.12 0.33 16 18 C -0.61 -17.51 9.11 -34.44 -0.31 -17.82 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 21 N -0.91 -28.02 13.65 55.43 0.76 -27.26 16 22 Si 1.07 25.56 29.90 -169.99 -5.08 20.47 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 C 0.13 1.24 6.36 -2.41 -0.02 1.23 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.34 6.60 -51.93 -0.34 0.00 16 32 H 0.03 0.22 8.11 -51.93 -0.42 -0.20 16 33 H 0.08 0.55 6.47 -51.93 -0.34 0.21 16 34 H 0.02 0.14 8.12 -51.93 -0.42 -0.29 16 35 H 0.07 0.37 6.57 -51.92 -0.34 0.03 16 36 H 0.07 0.35 7.95 -51.93 -0.41 -0.06 16 37 H 0.08 0.50 7.85 -51.93 -0.41 0.09 16 38 H 0.04 0.27 8.05 -51.93 -0.42 -0.15 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.56 8.04 -51.93 -0.42 0.15 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.13 1.78 8.14 -51.93 -0.42 1.36 16 44 H 0.13 1.81 8.14 -51.92 -0.42 1.38 16 45 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 16 48 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 49 H 0.27 8.14 7.22 -40.82 -0.29 7.84 16 50 H 0.07 0.65 8.03 -51.93 -0.42 0.23 16 51 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 411.92 15.07 6.21 6.21 Total: -1.00 -35.28 411.92 -12.09 -47.37 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -9.69 Total: -4.23 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: -0.16 Total: -28.45 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.73 Total: -44.44 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -2.03 Total: -36.74 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.47 kcal Atomic # 16 Polarization: 40.42 SS G_CDS: -0.61 Total: 39.82 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.28 -12.09 -47.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173948402.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.319 kcal (2) G-P(sol) polarization free energy of solvation -35.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds