Wall clock time and date at job start Tue Mar 31 2020 16:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46675 * 2 1 4 4 N 1.46907 * 109.46610 * 179.97438 * 3 2 1 5 5 C 1.46893 * 111.00438 * 293.95213 * 4 3 2 6 6 C 1.46908 * 110.99878 * 169.99928 * 4 3 2 7 7 C 1.53000 * 109.47123 * 287.90350 * 6 4 3 8 8 H 1.09004 * 110.91754 * 60.61548 * 7 6 4 9 9 C 1.55156 * 111.00186 * 296.71002 * 7 6 4 10 10 C 1.54323 * 102.94102 * 206.42482 * 9 7 6 11 11 N 1.47015 * 107.27226 * 22.19480 * 10 9 7 12 12 S 1.65606 * 125.64821 * 181.02157 * 11 10 9 13 13 O 1.42096 * 104.27580 * 333.95166 * 12 11 10 14 14 O 1.42101 * 104.27479 * 206.09479 * 12 11 10 15 15 C 1.81403 * 104.44755 * 90.02708 * 12 11 10 16 16 C 1.52999 * 109.46925 * 179.97438 * 15 12 11 17 17 C 1.53002 * 109.47183 * 179.97438 * 16 15 12 18 18 C 1.50703 * 109.47245 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99553 * 0.02562 * 18 17 16 20 20 C 1.37869 * 120.00053 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00129 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99963 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46980 * 90.00027 * 22 20 18 24 24 H 1.48495 * 109.47131 * 329.99850 * 22 20 18 25 25 H 1.48497 * 109.46995 * 210.00158 * 22 20 18 26 26 C 1.47424 * 108.70438 * 1.28665 * 11 10 9 27 27 H 1.08997 * 109.47307 * 59.99524 * 1 2 3 28 28 H 1.09000 * 109.47000 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47248 * 299.99614 * 1 2 3 30 30 H 1.09003 * 109.47248 * 240.00386 * 2 1 3 31 31 H 1.09004 * 109.47157 * 120.00108 * 2 1 3 32 32 H 1.09003 * 109.47453 * 60.00425 * 3 2 1 33 33 H 1.08997 * 109.47283 * 299.99581 * 3 2 1 34 34 H 1.08997 * 109.47332 * 302.16592 * 5 4 3 35 35 H 1.09008 * 109.46868 * 62.16286 * 5 4 3 36 36 H 1.08994 * 109.47340 * 182.15879 * 5 4 3 37 37 H 1.09000 * 109.47140 * 167.90083 * 6 4 3 38 38 H 1.09001 * 109.46830 * 47.89611 * 6 4 3 39 39 H 1.09001 * 110.71768 * 88.06427 * 9 7 6 40 40 H 1.08992 * 110.72399 * 324.79005 * 9 7 6 41 41 H 1.09007 * 109.88620 * 262.77499 * 10 9 7 42 42 H 1.09004 * 109.88458 * 141.61408 * 10 9 7 43 43 H 1.08996 * 109.47329 * 60.00121 * 15 12 11 44 44 H 1.09003 * 109.46675 * 299.99360 * 15 12 11 45 45 H 1.09008 * 109.47254 * 59.99848 * 16 15 12 46 46 H 1.09001 * 109.47232 * 300.00203 * 16 15 12 47 47 H 1.08996 * 109.46845 * 60.00379 * 17 16 15 48 48 H 1.08997 * 109.46886 * 300.00210 * 17 16 15 49 49 H 0.97001 * 120.00019 * 359.97438 * 21 20 18 50 50 H 1.08996 * 110.36750 * 94.47939 * 26 11 10 51 51 H 1.08998 * 110.37111 * 216.80683 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0349 0.8860 1.2542 6 6 4.0355 2.7932 -0.2375 7 6 3.8049 3.1800 -1.6998 8 1 2.7414 3.1812 -1.9389 9 6 4.5885 2.2402 -2.6538 10 6 4.8109 3.1213 -3.9011 11 7 4.7007 4.5227 -3.4708 12 16 4.8392 5.8480 -4.4542 13 8 5.6524 5.4021 -5.5308 14 8 5.2767 6.8844 -3.5860 15 6 3.1470 6.1674 -5.0244 16 6 3.1425 7.3842 -5.9518 17 6 1.7153 7.6532 -6.4333 18 6 1.7109 8.8514 -7.3473 19 1 2.6339 9.3689 -7.5636 20 6 0.5288 9.2868 -7.9075 21 7 -0.5952 8.6569 -7.6437 22 14 0.5233 10.7724 -9.0399 23 1 0.7346 10.3276 -10.4409 24 1 1.6138 11.6998 -8.6451 25 1 -0.7829 11.4707 -8.9340 26 6 4.4528 4.5531 -2.0179 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.6541 1.4638 2.0963 35 1 3.7171 -0.1521 1.3524 36 1 5.1238 0.9331 1.2439 37 1 5.1037 2.8100 -0.0213 38 1 3.5222 3.5028 0.4113 39 1 3.9940 1.3613 -2.9035 40 1 5.5416 1.9496 -2.2120 41 1 4.0498 2.9025 -4.6501 42 1 5.8031 2.9369 -4.3131 43 1 2.5051 6.3633 -4.1655 44 1 2.7753 5.2968 -5.5648 45 1 3.7845 7.1888 -6.8108 46 1 3.5141 8.2546 -5.4111 47 1 1.0730 7.8486 -5.5746 48 1 1.3442 6.7827 -6.9741 49 1 -0.5924 7.8857 -7.0554 50 1 5.3912 4.6672 -1.4753 51 1 3.7675 5.3627 -1.7668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173948402.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:55 Heat of formation + Delta-G solvation = -117.486556 kcal Electronic energy + Delta-G solvation = -27057.179725 eV Core-core repulsion = 23309.645827 eV Total energy + Delta-G solvation = -3747.533898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.08384 -38.31081 -38.24564 -37.15978 -36.80985 -34.30748 -34.26518 -32.29480 -30.36668 -29.34401 -27.88912 -27.09287 -25.49694 -23.72437 -23.31203 -22.57501 -21.93430 -20.87788 -19.99354 -19.13635 -18.62351 -17.69208 -17.27517 -16.80201 -16.56558 -16.23069 -15.95120 -15.69019 -15.42451 -15.36796 -15.04744 -14.70526 -14.51189 -14.12303 -13.95617 -13.81442 -13.77891 -13.68744 -13.33691 -13.26346 -13.17693 -13.09980 -12.91841 -12.66008 -12.63633 -12.58983 -12.47752 -12.23680 -12.00138 -11.95507 -11.91400 -11.80431 -11.67880 -11.55755 -11.53433 -11.23438 -10.73775 -10.58579 -9.97036 -9.23469 -8.73798 -6.44857 -0.89466 1.51077 1.59902 1.60410 1.78259 2.53174 2.70704 2.86205 3.04741 3.11194 3.50738 3.67000 3.69368 3.84153 3.89593 4.05773 4.17447 4.20147 4.31956 4.38717 4.45209 4.47741 4.48719 4.51382 4.55886 4.61518 4.72326 4.75144 4.76232 4.78361 4.83902 4.88820 4.94257 4.98750 5.06159 5.09595 5.10949 5.20093 5.22572 5.23742 5.33127 5.33448 5.41845 5.44059 5.47389 5.92470 6.13361 6.14844 6.16858 6.52675 7.36343 8.67761 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.002431 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.314529 B =11515.560844 C =12975.772595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.051 3.949 4 N -0.545 5.545 5 C 0.023 3.977 6 C 0.066 3.934 7 C -0.089 4.089 8 H 0.087 0.913 9 C -0.095 4.095 10 C 0.105 3.895 11 N -1.013 6.013 12 S 2.643 3.357 13 O -0.985 6.985 14 O -0.984 6.984 15 C -0.610 4.610 16 C -0.100 4.100 17 C 0.015 3.985 18 C -0.629 4.629 19 H 0.051 0.949 20 C -0.037 4.037 21 N -0.936 5.936 22 Si 1.119 2.881 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.280 1.280 26 C 0.117 3.883 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.000 1.000 48 H 0.000 1.000 49 H 0.258 0.742 50 H 0.077 0.923 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.020 -20.189 19.726 29.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.077 4.077 4 N -0.268 5.268 5 C -0.125 4.125 6 C -0.062 4.062 7 C -0.110 4.110 8 H 0.105 0.895 9 C -0.134 4.134 10 C -0.019 4.019 11 N -0.852 5.852 12 S 2.740 3.260 13 O -0.975 6.975 14 O -0.974 6.974 15 C -0.741 4.741 16 C -0.139 4.139 17 C -0.023 4.023 18 C -0.667 4.667 19 H 0.069 0.931 20 C -0.235 4.235 21 N -0.573 5.573 22 Si 0.940 3.060 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.205 1.205 26 C -0.008 4.008 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.058 0.942 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.067 0.933 50 H 0.095 0.905 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.065 -19.019 18.197 27.530 hybrid contribution -0.194 -0.514 1.476 1.574 sum 7.870 -19.533 19.672 28.818 Atomic orbital electron populations 1.21744 0.95484 1.02072 1.01734 1.21477 0.95476 0.95902 1.02473 1.22252 0.87089 0.97629 1.00681 1.61955 1.07763 1.21802 1.35329 1.22442 1.00717 1.00278 0.89036 1.22020 1.00892 0.88963 0.94320 1.22387 1.00335 0.92973 0.95261 0.89514 1.22455 1.01231 0.97130 0.92607 1.22040 1.01989 0.78926 0.98958 1.58452 1.88361 1.19660 1.18705 1.03881 0.77104 0.72225 0.72768 1.93520 1.65997 1.81069 1.56941 1.93525 1.80467 1.57562 1.65896 1.30570 1.24754 1.07824 1.10925 1.21190 1.00239 0.94800 0.97659 1.19129 0.92430 0.95691 0.95046 1.22576 0.96690 1.15644 1.31756 0.93051 1.27443 0.91814 1.04621 0.99592 1.70892 1.28831 1.21014 1.36543 0.82917 0.76374 0.72150 0.74607 1.19627 1.19518 1.20516 1.22239 1.00893 0.98944 0.78748 0.92937 0.92086 0.92846 0.91594 0.91751 0.95209 0.90908 0.95793 0.90708 0.90856 0.89643 0.94169 0.88919 0.90021 0.90889 0.91477 0.83874 0.83898 0.91612 0.91587 0.98167 0.98199 0.93293 0.90512 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.22 5.86 30.59 0.18 -1.04 16 3 C 0.05 0.60 4.81 86.30 0.41 1.02 16 4 N -0.54 -6.25 4.46 -922.43 -4.12 -10.36 16 5 C 0.02 0.22 9.27 127.69 1.18 1.40 16 6 C 0.07 0.76 4.44 86.30 0.38 1.14 16 7 C -0.09 -1.20 3.00 -9.32 -0.03 -1.23 16 8 H 0.09 1.19 6.72 -2.39 -0.02 1.17 16 9 C -0.10 -1.27 6.17 31.78 0.20 -1.07 16 10 C 0.11 1.93 6.89 86.73 0.60 2.53 16 11 N -1.01 -22.56 3.62 -506.03 -1.83 -24.39 16 12 S 2.64 79.63 5.65 -56.49 -0.32 79.31 16 13 O -0.98 -35.38 17.60 -127.65 -2.25 -37.63 16 14 O -0.98 -34.98 17.60 -127.65 -2.25 -37.22 16 15 C -0.61 -18.90 6.18 71.98 0.44 -18.46 16 16 C -0.10 -4.17 5.16 30.59 0.16 -4.02 16 17 C 0.02 0.79 4.28 29.85 0.13 0.92 16 18 C -0.63 -36.62 9.11 25.60 0.23 -36.39 16 19 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 20 C -0.04 -2.17 5.46 84.65 0.46 -1.71 16 21 N -0.94 -58.03 13.65 21.44 0.29 -57.73 16 22 Si 1.12 50.85 29.90 68.60 2.05 52.90 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 C 0.12 2.07 6.36 86.93 0.55 2.63 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.63 6.60 -2.38 -0.02 0.61 16 32 H 0.03 0.37 8.11 -2.39 -0.02 0.35 16 33 H 0.07 0.92 6.47 -2.39 -0.02 0.91 16 34 H 0.02 0.23 8.12 -2.39 -0.02 0.21 16 35 H 0.07 0.63 6.57 -2.38 -0.02 0.62 16 36 H 0.07 0.60 7.95 -2.39 -0.02 0.58 16 37 H 0.09 0.88 7.85 -2.39 -0.02 0.86 16 38 H 0.04 0.47 8.05 -2.39 -0.02 0.45 16 39 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.01 8.04 -2.39 -0.02 0.99 16 41 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.14 3.90 8.14 -2.39 -0.02 3.88 16 44 H 0.14 3.92 8.14 -2.39 -0.02 3.90 16 45 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 46 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 47 H 0.00 0.00 8.01 -2.39 -0.02 -0.02 16 48 H 0.00 -0.02 8.01 -2.39 -0.02 -0.03 16 49 H 0.26 15.99 7.22 -92.71 -0.67 15.32 16 50 H 0.08 1.28 8.03 -2.39 -0.02 1.26 16 51 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -75.11 411.92 -1.84 -76.95 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.96 Total: 13.32 kcal Atomic # 6 Polarization: -60.76 SS G_CDS: 5.62 Total: -55.14 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -5.66 Total: -92.48 kcal Atomic # 8 Polarization: -70.36 SS G_CDS: -4.49 Total: -74.85 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.05 Total: 52.90 kcal Atomic # 16 Polarization: 79.63 SS G_CDS: -0.32 Total: 79.31 kcal Total: -75.11 -1.84 -76.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173948402.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.536 kcal (2) G-P(sol) polarization free energy of solvation -75.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds