Wall clock time and date at job start Tue Mar 31 2020 16:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46695 * 2 1 4 4 N 1.46905 * 109.46665 * 180.02562 * 3 2 1 5 5 C 1.46893 * 111.00223 * 66.05100 * 4 3 2 6 6 C 1.46908 * 110.99440 * 190.00246 * 4 3 2 7 7 C 1.53000 * 109.47083 * 75.61460 * 6 4 3 8 8 H 1.09000 * 110.91636 * 308.21835 * 7 6 4 9 9 C 1.55151 * 111.00371 * 72.12725 * 7 6 4 10 10 C 1.54333 * 103.02290 * 153.38108 * 9 7 6 11 11 N 1.47022 * 107.26117 * 338.13491 * 10 9 7 12 12 S 1.65610 * 125.64761 * 178.85167 * 11 10 9 13 13 O 1.42093 * 104.27761 * 153.62302 * 12 11 10 14 14 O 1.42096 * 104.27569 * 25.76230 * 12 11 10 15 15 C 1.81401 * 104.44651 * 269.69365 * 12 11 10 16 16 C 1.53002 * 109.46948 * 179.97438 * 15 12 11 17 17 C 1.53002 * 109.47296 * 179.97438 * 16 15 12 18 18 C 1.50696 * 109.47190 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99902 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00017 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99631 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00199 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47131 * 180.02562 * 22 20 18 24 24 H 1.48496 * 109.46786 * 59.99879 * 22 20 18 25 25 H 1.48498 * 109.46961 * 300.00355 * 22 20 18 26 26 C 1.47424 * 108.70470 * 358.58818 * 11 10 9 27 27 H 1.09000 * 109.47513 * 299.99725 * 1 2 3 28 28 H 1.08996 * 109.47496 * 60.00431 * 1 2 3 29 29 H 1.09005 * 109.46696 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47165 * 240.00301 * 2 1 3 31 31 H 1.08998 * 109.47308 * 120.00323 * 2 1 3 32 32 H 1.08994 * 109.47172 * 60.00233 * 3 2 1 33 33 H 1.09004 * 109.47104 * 300.00074 * 3 2 1 34 34 H 1.08997 * 109.46927 * 187.89220 * 5 4 3 35 35 H 1.09007 * 109.46945 * 307.88909 * 5 4 3 36 36 H 1.08992 * 109.47610 * 67.88912 * 5 4 3 37 37 H 1.09003 * 109.47101 * 315.61060 * 6 4 3 38 38 H 1.08996 * 109.46822 * 195.61581 * 6 4 3 39 39 H 1.09005 * 110.72017 * 271.93689 * 9 7 6 40 40 H 1.09002 * 110.72438 * 35.03382 * 9 7 6 41 41 H 1.08997 * 109.99114 * 218.66492 * 10 9 7 42 42 H 1.08994 * 109.78500 * 97.49284 * 10 9 7 43 43 H 1.09002 * 109.47155 * 59.99841 * 15 12 11 44 44 H 1.09001 * 109.47472 * 300.00133 * 15 12 11 45 45 H 1.09002 * 109.46574 * 60.00405 * 16 15 12 46 46 H 1.08989 * 109.47402 * 300.00078 * 16 15 12 47 47 H 1.09002 * 109.46709 * 60.00261 * 17 16 15 48 48 H 1.08997 * 109.47077 * 300.00789 * 17 16 15 49 49 H 0.96996 * 120.00160 * 0.02562 * 21 20 18 50 50 H 1.08997 * 110.36417 * 143.19361 * 26 11 10 51 51 H 1.08992 * 110.36390 * 265.40413 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0349 0.8861 -1.2542 6 6 4.0354 2.7932 0.2376 7 6 3.8841 3.1457 1.7187 8 1 2.8608 2.9803 2.0556 9 6 4.8914 2.3458 2.5864 10 6 5.0929 3.2577 3.8150 11 7 4.7185 4.6213 3.4124 12 16 4.7377 5.9565 4.3919 13 8 4.9242 7.0447 3.4974 14 8 5.7074 5.6493 5.3841 15 6 3.0768 6.0079 5.1195 16 6 2.9677 7.2125 6.0565 17 6 1.5666 7.2563 6.6698 18 6 1.4589 8.4431 7.5922 19 1 2.3050 9.1006 7.7272 20 6 0.2802 8.6895 8.2638 21 7 -0.7499 7.8885 8.0997 22 14 0.1464 10.1610 9.4067 23 1 -1.2130 10.2028 10.0029 24 1 0.3890 11.4083 8.6382 25 1 1.1572 10.0415 10.4880 26 6 4.3293 4.6043 1.9906 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8899 33 1 1.6765 1.9564 -0.8900 34 1 5.1154 0.7675 -1.1739 35 1 3.5758 -0.0847 -1.4416 36 1 3.8037 1.5622 -2.0772 37 1 3.4797 3.5114 -0.3654 38 1 5.0894 2.8261 -0.0380 39 1 4.4687 1.3853 2.8813 40 1 5.8320 2.2044 2.0539 41 1 6.1370 3.2370 4.1273 42 1 4.4529 2.9234 4.6315 43 1 2.8986 5.0922 5.6832 44 1 2.3350 6.0962 4.3258 45 1 3.1460 8.1284 5.4931 46 1 3.7094 7.1239 6.8502 47 1 1.3878 6.3404 7.2331 48 1 0.8251 7.3451 5.8758 49 1 -0.6803 7.1242 7.5065 50 1 3.5022 5.2922 1.8155 51 1 5.1797 4.8667 1.3614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173948414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:59 Heat of formation + Delta-G solvation = -93.405818 kcal Electronic energy + Delta-G solvation = -27042.676721 eV Core-core repulsion = 23296.187042 eV Total energy + Delta-G solvation = -3746.489679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.40248 -37.65063 -36.95514 -35.79434 -34.92180 -33.77815 -32.28269 -31.59780 -29.63885 -27.48845 -27.40596 -26.48603 -23.52199 -23.08154 -22.42081 -21.35552 -20.86565 -20.34303 -18.84799 -17.66224 -17.02480 -16.65293 -16.13793 -15.93831 -15.66119 -15.60878 -14.80872 -14.55703 -14.37951 -13.92959 -13.75738 -13.63195 -13.45767 -13.34415 -13.20999 -13.08575 -12.61944 -12.38069 -12.17488 -12.05819 -12.04213 -11.94511 -11.86513 -11.72732 -11.58066 -11.45738 -11.41809 -11.19910 -11.09251 -10.96483 -10.80757 -10.78328 -10.68734 -10.14289 -10.09954 -9.81123 -9.05676 -8.72609 -8.57371 -8.37304 -6.41192 -4.10936 0.36125 2.71671 3.43228 3.43521 3.45324 3.63906 3.96276 4.10023 4.26465 4.45734 4.51736 4.52126 4.56229 4.66855 4.89235 4.98951 4.99524 5.04829 5.05262 5.08883 5.10184 5.13972 5.22911 5.23458 5.32190 5.36789 5.38129 5.43066 5.44332 5.53627 5.65132 5.69139 5.71351 5.77789 5.81158 5.82935 5.92379 5.94710 6.07912 6.12309 6.30040 6.31508 6.65637 6.66089 6.71422 7.26162 7.38273 8.13099 8.40953 8.82629 9.61340 10.99564 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.002474 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.296820 B =11315.133410 C =12911.602803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C 0.050 3.950 4 N -0.540 5.540 5 C 0.022 3.978 6 C 0.064 3.936 7 C -0.096 4.096 8 H 0.087 0.913 9 C -0.109 4.109 10 C 0.117 3.883 11 N -1.017 6.017 12 S 2.617 3.383 13 O -0.957 6.957 14 O -0.956 6.956 15 C -0.612 4.612 16 C -0.098 4.098 17 C 0.018 3.982 18 C -0.607 4.607 19 H 0.052 0.948 20 C 0.015 3.985 21 N -0.912 5.912 22 Si 1.070 2.930 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.287 1.287 26 C 0.127 3.873 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.011 0.989 48 H 0.011 0.989 49 H 0.268 0.732 50 H 0.074 0.926 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.428 -17.748 -19.963 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.078 4.078 4 N -0.264 5.264 5 C -0.126 4.126 6 C -0.065 4.065 7 C -0.116 4.116 8 H 0.105 0.895 9 C -0.148 4.148 10 C -0.009 4.009 11 N -0.854 5.854 12 S 2.714 3.286 13 O -0.948 6.948 14 O -0.947 6.947 15 C -0.743 4.743 16 C -0.138 4.138 17 C -0.020 4.020 18 C -0.645 4.645 19 H 0.070 0.930 20 C -0.188 4.188 21 N -0.548 5.548 22 Si 0.897 3.103 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.213 1.213 26 C 0.001 3.999 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.030 0.970 48 H 0.029 0.971 49 H 0.078 0.922 50 H 0.093 0.907 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.337 -16.605 -18.399 26.148 hybrid contribution 0.065 -0.614 -1.685 1.795 sum 8.402 -17.219 -20.083 27.757 Atomic orbital electron populations 1.21751 0.95564 1.01843 1.01956 1.21543 0.95456 0.96287 1.02558 1.22257 0.87047 0.97392 1.01056 1.61942 1.07762 1.22026 1.34680 1.22434 1.00758 0.99767 0.89678 1.22058 1.00433 0.88806 0.95153 1.22393 1.00500 0.93963 0.94787 0.89459 1.22542 0.99274 0.98159 0.94783 1.21762 1.00627 0.80728 0.97740 1.58778 1.82664 1.22977 1.20956 1.04938 0.77824 0.72181 0.73638 1.93564 1.85778 1.51765 1.63665 1.93562 1.56977 1.83463 1.60672 1.30623 1.22650 1.09222 1.11848 1.21357 1.03295 0.92611 0.96526 1.19180 0.89821 0.97572 0.95478 1.22070 1.01209 1.12241 1.29002 0.92995 1.25898 0.92272 1.02237 0.98435 1.70797 1.31759 1.15396 1.36849 0.83534 0.76126 0.74745 0.75848 1.20716 1.21317 1.21309 1.21927 0.99769 0.96866 0.81351 0.92439 0.92918 0.92522 0.92119 0.91091 0.90438 0.94910 0.91367 0.91102 0.95747 0.94105 0.90369 0.89799 0.90814 0.91080 0.91698 0.85560 0.85644 0.91450 0.91416 0.97043 0.97074 0.92170 0.90733 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.74 5.87 -26.73 -0.16 -0.90 16 3 C 0.05 0.34 4.79 -3.82 -0.02 0.32 16 4 N -0.54 -3.69 4.63 -242.91 -1.12 -4.81 16 5 C 0.02 0.12 9.36 60.06 0.56 0.69 16 6 C 0.06 0.44 4.45 -3.82 -0.02 0.42 16 7 C -0.10 -0.75 3.09 -88.47 -0.27 -1.02 16 8 H 0.09 0.70 6.70 -51.93 -0.35 0.35 16 9 C -0.11 -0.85 6.36 -24.89 -0.16 -1.00 16 10 C 0.12 1.17 6.90 -3.06 -0.02 1.15 16 11 N -1.02 -12.08 3.62 -111.42 -0.40 -12.48 16 12 S 2.62 40.45 5.65 -107.50 -0.61 39.84 16 13 O -0.96 -17.31 17.60 -57.54 -1.01 -18.32 16 14 O -0.96 -17.41 17.60 -57.54 -1.01 -18.43 16 15 C -0.61 -9.73 6.18 37.16 0.23 -9.50 16 16 C -0.10 -2.06 5.16 -26.73 -0.14 -2.20 16 17 C 0.02 0.46 4.28 -27.88 -0.12 0.34 16 18 C -0.61 -17.53 9.11 -34.44 -0.31 -17.84 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 21 N -0.91 -28.00 13.65 55.43 0.76 -27.24 16 22 Si 1.07 25.49 29.90 -169.99 -5.08 20.40 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.13 1.24 6.36 -2.53 -0.02 1.22 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.35 6.40 -51.92 -0.33 0.02 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.56 6.58 -51.93 -0.34 0.22 16 33 H 0.03 0.23 8.12 -51.93 -0.42 -0.20 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.37 6.15 -51.92 -0.32 0.05 16 36 H 0.02 0.14 8.14 -51.93 -0.42 -0.29 16 37 H 0.04 0.28 8.00 -51.93 -0.42 -0.14 16 38 H 0.08 0.50 7.78 -51.93 -0.40 0.09 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.54 7.92 -51.93 -0.41 0.13 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.13 1.81 8.14 -51.92 -0.42 1.39 16 44 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 46 H 0.07 1.40 8.14 -51.94 -0.42 0.97 16 47 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 48 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 49 H 0.27 8.13 7.22 -40.82 -0.29 7.83 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 51 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 LS Contribution 411.90 15.07 6.21 6.21 Total: -1.00 -35.31 411.90 -12.11 -47.42 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -9.66 Total: -4.08 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: -0.17 Total: -28.51 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.77 Total: -44.54 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -2.03 Total: -36.75 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.40 kcal Atomic # 16 Polarization: 40.45 SS G_CDS: -0.61 Total: 39.84 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.31 -12.11 -47.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173948414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.984 kcal (2) G-P(sol) polarization free energy of solvation -35.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds