Wall clock time and date at job start Tue Mar 31 2020 16:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46695 * 2 1 4 4 N 1.46905 * 109.46665 * 180.02562 * 3 2 1 5 5 C 1.46893 * 111.00223 * 66.05100 * 4 3 2 6 6 C 1.46908 * 110.99440 * 190.00246 * 4 3 2 7 7 C 1.53000 * 109.47083 * 75.61460 * 6 4 3 8 8 H 1.09000 * 110.91636 * 308.21835 * 7 6 4 9 9 C 1.55151 * 111.00371 * 72.12725 * 7 6 4 10 10 C 1.54333 * 103.02290 * 153.38108 * 9 7 6 11 11 N 1.47022 * 107.26117 * 338.13491 * 10 9 7 12 12 S 1.65610 * 125.64761 * 178.85167 * 11 10 9 13 13 O 1.42093 * 104.27761 * 153.62302 * 12 11 10 14 14 O 1.42096 * 104.27569 * 25.76230 * 12 11 10 15 15 C 1.81401 * 104.44651 * 269.69365 * 12 11 10 16 16 C 1.53002 * 109.46948 * 179.97438 * 15 12 11 17 17 C 1.53002 * 109.47296 * 179.97438 * 16 15 12 18 18 C 1.50696 * 109.47190 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99902 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00017 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99631 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00199 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47131 * 180.02562 * 22 20 18 24 24 H 1.48496 * 109.46786 * 59.99879 * 22 20 18 25 25 H 1.48498 * 109.46961 * 300.00355 * 22 20 18 26 26 C 1.47424 * 108.70470 * 358.58818 * 11 10 9 27 27 H 1.09000 * 109.47513 * 299.99725 * 1 2 3 28 28 H 1.08996 * 109.47496 * 60.00431 * 1 2 3 29 29 H 1.09005 * 109.46696 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47165 * 240.00301 * 2 1 3 31 31 H 1.08998 * 109.47308 * 120.00323 * 2 1 3 32 32 H 1.08994 * 109.47172 * 60.00233 * 3 2 1 33 33 H 1.09004 * 109.47104 * 300.00074 * 3 2 1 34 34 H 1.08997 * 109.46927 * 187.89220 * 5 4 3 35 35 H 1.09007 * 109.46945 * 307.88909 * 5 4 3 36 36 H 1.08992 * 109.47610 * 67.88912 * 5 4 3 37 37 H 1.09003 * 109.47101 * 315.61060 * 6 4 3 38 38 H 1.08996 * 109.46822 * 195.61581 * 6 4 3 39 39 H 1.09005 * 110.72017 * 271.93689 * 9 7 6 40 40 H 1.09002 * 110.72438 * 35.03382 * 9 7 6 41 41 H 1.08997 * 109.99114 * 218.66492 * 10 9 7 42 42 H 1.08994 * 109.78500 * 97.49284 * 10 9 7 43 43 H 1.09002 * 109.47155 * 59.99841 * 15 12 11 44 44 H 1.09001 * 109.47472 * 300.00133 * 15 12 11 45 45 H 1.09002 * 109.46574 * 60.00405 * 16 15 12 46 46 H 1.08989 * 109.47402 * 300.00078 * 16 15 12 47 47 H 1.09002 * 109.46709 * 60.00261 * 17 16 15 48 48 H 1.08997 * 109.47077 * 300.00789 * 17 16 15 49 49 H 0.96996 * 120.00160 * 0.02562 * 21 20 18 50 50 H 1.08997 * 110.36417 * 143.19361 * 26 11 10 51 51 H 1.08992 * 110.36390 * 265.40413 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0349 0.8861 -1.2542 6 6 4.0354 2.7932 0.2376 7 6 3.8841 3.1457 1.7187 8 1 2.8608 2.9803 2.0556 9 6 4.8914 2.3458 2.5864 10 6 5.0929 3.2577 3.8150 11 7 4.7185 4.6213 3.4124 12 16 4.7377 5.9565 4.3919 13 8 4.9242 7.0447 3.4974 14 8 5.7074 5.6493 5.3841 15 6 3.0768 6.0079 5.1195 16 6 2.9677 7.2125 6.0565 17 6 1.5666 7.2563 6.6698 18 6 1.4589 8.4431 7.5922 19 1 2.3050 9.1006 7.7272 20 6 0.2802 8.6895 8.2638 21 7 -0.7499 7.8885 8.0997 22 14 0.1464 10.1610 9.4067 23 1 -1.2130 10.2028 10.0029 24 1 0.3890 11.4083 8.6382 25 1 1.1572 10.0415 10.4880 26 6 4.3293 4.6043 1.9906 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8899 33 1 1.6765 1.9564 -0.8900 34 1 5.1154 0.7675 -1.1739 35 1 3.5758 -0.0847 -1.4416 36 1 3.8037 1.5622 -2.0772 37 1 3.4797 3.5114 -0.3654 38 1 5.0894 2.8261 -0.0380 39 1 4.4687 1.3853 2.8813 40 1 5.8320 2.2044 2.0539 41 1 6.1370 3.2370 4.1273 42 1 4.4529 2.9234 4.6315 43 1 2.8986 5.0922 5.6832 44 1 2.3350 6.0962 4.3258 45 1 3.1460 8.1284 5.4931 46 1 3.7094 7.1239 6.8502 47 1 1.3878 6.3404 7.2331 48 1 0.8251 7.3451 5.8758 49 1 -0.6803 7.1242 7.5065 50 1 3.5022 5.2922 1.8155 51 1 5.1797 4.8667 1.3614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173948414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:58 Heat of formation + Delta-G solvation = -117.365748 kcal Electronic energy + Delta-G solvation = -27043.715702 eV Core-core repulsion = 23296.187042 eV Total energy + Delta-G solvation = -3747.528659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.07172 -38.31582 -38.26947 -37.16323 -36.80998 -34.31878 -34.26515 -32.30371 -30.37473 -29.34418 -27.89665 -27.10331 -25.49582 -23.75191 -23.28648 -22.58033 -21.88009 -20.95081 -20.00350 -19.13915 -18.62968 -17.69232 -17.28016 -16.83352 -16.53820 -16.23490 -15.95693 -15.68020 -15.41031 -15.37556 -15.07911 -14.65007 -14.51832 -14.12616 -13.95540 -13.82920 -13.75408 -13.69292 -13.33949 -13.26793 -13.18662 -13.10508 -12.99552 -12.64996 -12.62396 -12.59892 -12.48376 -12.24419 -12.02782 -11.95884 -11.91318 -11.80555 -11.66455 -11.55103 -11.52086 -11.24286 -10.73956 -10.58403 -9.97286 -9.23320 -8.73628 -6.44759 -0.89698 1.51465 1.59536 1.60051 1.79293 2.53627 2.70372 2.86179 3.04405 3.11253 3.50075 3.66422 3.68592 3.84534 3.90157 4.04269 4.17201 4.20050 4.31687 4.36633 4.45200 4.48047 4.48338 4.51903 4.55764 4.61282 4.71526 4.75238 4.76628 4.77452 4.83737 4.87528 4.93760 4.97770 5.05728 5.09159 5.10797 5.19467 5.22431 5.23750 5.32987 5.33171 5.41234 5.43519 5.46151 5.92502 6.13187 6.15082 6.16941 6.52553 7.36470 8.67860 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.002474 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.296820 B =11315.133410 C =12911.602803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.051 3.949 4 N -0.546 5.546 5 C 0.022 3.978 6 C 0.067 3.933 7 C -0.087 4.087 8 H 0.086 0.914 9 C -0.099 4.099 10 C 0.106 3.894 11 N -1.013 6.013 12 S 2.643 3.357 13 O -0.984 6.984 14 O -0.985 6.985 15 C -0.611 4.611 16 C -0.100 4.100 17 C 0.015 3.985 18 C -0.630 4.630 19 H 0.052 0.948 20 C -0.037 4.037 21 N -0.935 5.935 22 Si 1.116 2.884 23 H -0.281 1.281 24 H -0.269 1.269 25 H -0.269 1.269 26 C 0.116 3.884 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.024 0.976 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.000 1.000 48 H 0.000 1.000 49 H 0.257 0.743 50 H 0.078 0.922 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.014 -18.439 -20.839 29.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.077 4.077 4 N -0.270 5.270 5 C -0.126 4.126 6 C -0.062 4.062 7 C -0.108 4.108 8 H 0.105 0.895 9 C -0.138 4.138 10 C -0.018 4.018 11 N -0.852 5.852 12 S 2.740 3.260 13 O -0.974 6.974 14 O -0.975 6.975 15 C -0.741 4.741 16 C -0.139 4.139 17 C -0.023 4.023 18 C -0.667 4.667 19 H 0.070 0.930 20 C -0.235 4.235 21 N -0.572 5.572 22 Si 0.937 3.063 23 H -0.206 1.206 24 H -0.194 1.194 25 H -0.194 1.194 26 C -0.009 4.009 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.067 0.933 50 H 0.096 0.904 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.935 -17.303 -19.286 27.408 hybrid contribution -0.103 -0.482 -1.483 1.563 sum 8.832 -17.785 -20.769 28.734 Atomic orbital electron populations 1.21744 0.95472 1.02087 1.01740 1.21496 0.95489 0.95899 1.02492 1.22242 0.87166 0.97626 1.00654 1.61941 1.07709 1.21916 1.35402 1.22461 1.01115 0.99889 0.89132 1.22020 1.00941 0.88943 0.94266 1.22324 1.00385 0.92510 0.95582 0.89547 1.22510 0.99730 0.97844 0.93679 1.22025 1.00673 0.79933 0.99215 1.58454 1.82421 1.22865 1.21439 1.03872 0.76877 0.72180 0.73022 1.93524 1.85985 1.53683 1.64253 1.93521 1.57905 1.84063 1.62017 1.30573 1.24212 1.07654 1.11655 1.21188 1.00228 0.95038 0.97425 1.19124 0.92430 0.95951 0.94768 1.22558 1.01343 1.13264 1.29578 0.93008 1.27452 0.91986 1.04328 0.99695 1.70921 1.32670 1.15941 1.37696 0.82952 0.76582 0.72115 0.74662 1.20603 1.19374 1.19398 1.22193 1.00323 0.98429 0.79933 0.93010 0.92770 0.92068 0.91591 0.91671 0.91034 0.95121 0.90789 0.90657 0.95724 0.94062 0.89613 0.88858 0.89954 0.91388 0.90911 0.83911 0.83894 0.91574 0.91600 0.98217 0.98195 0.93331 0.90384 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.92 16 2 C -0.12 -1.26 5.87 30.59 0.18 -1.08 16 3 C 0.05 0.61 4.79 86.30 0.41 1.02 16 4 N -0.55 -6.38 4.63 -922.44 -4.27 -10.65 16 5 C 0.02 0.21 9.36 127.69 1.20 1.40 16 6 C 0.07 0.77 4.45 86.30 0.38 1.15 16 7 C -0.09 -1.19 3.09 -9.40 -0.03 -1.22 16 8 H 0.09 1.22 6.70 -2.39 -0.02 1.21 16 9 C -0.10 -1.31 6.36 31.78 0.20 -1.10 16 10 C 0.11 1.94 6.90 86.73 0.60 2.54 16 11 N -1.01 -22.60 3.62 -506.43 -1.83 -24.44 16 12 S 2.64 79.71 5.65 -56.49 -0.32 79.39 16 13 O -0.98 -35.00 17.60 -127.65 -2.25 -37.24 16 14 O -0.98 -35.36 17.60 -127.65 -2.25 -37.60 16 15 C -0.61 -18.95 6.18 71.98 0.44 -18.51 16 16 C -0.10 -4.17 5.16 30.60 0.16 -4.02 16 17 C 0.02 0.81 4.28 29.85 0.13 0.93 16 18 C -0.63 -36.67 9.11 25.60 0.23 -36.44 16 19 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 20 C -0.04 -2.16 5.46 84.65 0.46 -1.70 16 21 N -0.94 -58.07 13.65 21.45 0.29 -57.78 16 22 Si 1.12 50.73 29.90 68.60 2.05 52.78 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 26 C 0.12 2.08 6.36 86.86 0.55 2.63 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.07 0.65 6.40 -2.38 -0.02 0.63 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.94 6.58 -2.39 -0.02 0.92 16 33 H 0.03 0.38 8.12 -2.38 -0.02 0.36 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.64 6.15 -2.38 -0.01 0.62 16 36 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.04 0.48 8.00 -2.39 -0.02 0.46 16 38 H 0.09 0.88 7.78 -2.39 -0.02 0.86 16 39 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.08 0.98 7.92 -2.39 -0.02 0.96 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.14 3.94 8.14 -2.39 -0.02 3.92 16 44 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 45 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 46 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.00 -0.03 8.01 -2.39 -0.02 -0.04 16 48 H 0.00 -0.01 8.01 -2.39 -0.02 -0.03 16 49 H 0.26 15.99 7.22 -92.71 -0.67 15.32 16 50 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.08 1.28 8.04 -2.39 -0.02 1.26 16 Total: -1.00 -75.23 411.90 -1.98 -77.21 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.96 Total: 13.63 kcal Atomic # 6 Polarization: -60.94 SS G_CDS: 5.63 Total: -55.31 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -5.81 Total: -92.86 kcal Atomic # 8 Polarization: -70.35 SS G_CDS: -4.49 Total: -74.85 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.05 Total: 52.78 kcal Atomic # 16 Polarization: 79.71 SS G_CDS: -0.32 Total: 79.39 kcal Total: -75.23 -1.98 -77.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173948414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.154 kcal (2) G-P(sol) polarization free energy of solvation -75.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds