Wall clock time and date at job start Tue Mar 31 2020 16:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46843 * 2 1 4 4 N 1.46901 * 109.47301 * 119.99622 * 2 1 3 5 5 C 1.46903 * 110.99699 * 56.04885 * 4 2 1 6 6 C 1.46898 * 110.99683 * 180.02562 * 4 2 1 7 7 C 1.53008 * 109.46743 * 170.00584 * 6 4 2 8 8 N 1.46498 * 109.46632 * 179.97438 * 7 6 4 9 9 C 1.34785 * 119.99521 * 179.97438 * 8 7 6 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31506 * 119.99512 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00019 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47192 * 89.99431 * 22 20 18 24 24 H 1.48503 * 109.47066 * 209.99637 * 22 20 18 25 25 H 1.48500 * 109.47078 * 329.99517 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.09008 * 109.46861 * 299.99698 * 1 2 3 29 29 H 1.08995 * 109.47172 * 59.99943 * 1 2 3 30 30 H 1.08999 * 109.47021 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46739 * 240.00044 * 2 1 3 32 32 H 1.09009 * 109.47316 * 299.99833 * 3 2 1 33 33 H 1.09001 * 109.47559 * 59.99934 * 3 2 1 34 34 H 1.08997 * 109.46987 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46934 * 183.95171 * 5 4 2 36 36 H 1.09000 * 109.46684 * 303.95163 * 5 4 2 37 37 H 1.08998 * 109.47154 * 63.94965 * 5 4 2 38 38 H 1.08992 * 109.47244 * 50.00351 * 6 4 2 39 39 H 1.09003 * 109.46831 * 289.99728 * 6 4 2 40 40 H 1.08992 * 109.47442 * 59.99887 * 7 6 4 41 41 H 1.09003 * 109.46758 * 299.99188 * 7 6 4 42 42 H 0.96995 * 120.00513 * 359.97438 * 8 7 6 43 43 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 44 44 H 1.07997 * 120.00191 * 168.68069 * 12 11 9 45 45 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 46 46 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 47 47 H 0.97008 * 119.99650 * 180.02562 * 21 20 18 48 48 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 49 49 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6924 1.1995 5 6 1.4731 -2.0535 1.2816 6 6 3.4882 -0.7114 1.2336 7 6 3.9601 -1.2114 2.6005 8 7 5.4245 -1.2309 2.6343 9 6 6.0675 -1.6385 3.7466 10 8 5.4314 -1.9899 4.7231 11 6 7.5295 -1.6523 3.7825 12 6 8.1740 -1.9226 4.9378 13 6 7.4289 -1.9570 6.2041 14 6 6.4796 -0.9674 6.4875 15 6 5.7810 -1.0063 7.6722 16 6 6.0243 -2.0213 8.5930 17 8 5.3370 -2.0530 9.7611 18 6 5.5323 -3.1229 10.5571 19 1 6.2715 -3.8647 10.2930 20 6 4.7839 -3.2713 11.7157 21 7 4.9749 -4.3150 12.4926 22 14 3.5050 -1.9887 12.1722 23 1 2.1967 -2.3600 11.5757 24 1 3.3747 -1.9236 13.6501 25 1 3.9269 -0.6626 11.6536 26 6 6.9707 -3.0040 8.3179 27 6 7.6700 -2.9763 7.1333 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8901 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.7950 -2.5186 2.2133 36 1 0.3843 -2.0099 1.2545 37 1 1.8343 -2.6416 0.4381 38 1 3.8687 0.2958 1.0640 39 1 3.8611 -1.3767 0.4549 40 1 3.5797 -2.2186 2.7702 41 1 3.5872 -0.5461 3.3793 42 1 5.9315 -0.9506 1.8564 43 1 8.0938 -1.4463 2.8849 44 1 9.2369 -2.1135 4.9314 45 1 6.2931 -0.1771 5.7753 46 1 5.0459 -0.2457 7.8901 47 1 4.4513 -4.4190 13.3026 48 1 7.1564 -3.7894 9.0355 49 1 8.4039 -3.7396 6.9206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255638877.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:15 Heat of formation + Delta-G solvation = -0.559985 kcal Electronic energy + Delta-G solvation = -27704.607079 eV Core-core repulsion = 23826.699546 eV Total energy + Delta-G solvation = -3877.907533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.85767 -39.01624 -38.60338 -36.66365 -34.89923 -33.06906 -32.50015 -32.23400 -30.17861 -29.74299 -28.35075 -27.27179 -25.65377 -25.25451 -23.31843 -21.96778 -21.84011 -20.93633 -20.33462 -19.18120 -17.79602 -17.36062 -16.94059 -16.68753 -16.00761 -15.36298 -15.06069 -14.99227 -14.72860 -14.57823 -14.19802 -13.85930 -13.78128 -13.60660 -13.37205 -13.23721 -12.96532 -12.75025 -12.60151 -12.54513 -12.30843 -12.23178 -12.11353 -12.06687 -11.90481 -11.46626 -11.39801 -11.25665 -10.94709 -10.92247 -10.73868 -10.63704 -10.11998 -9.52385 -9.44345 -9.19550 -8.97332 -8.72949 -8.71241 -7.98308 -6.95384 -6.39619 -4.03331 1.20039 2.35973 2.64518 3.06262 3.25424 3.29827 3.44239 3.61318 3.77561 4.27052 4.46250 4.53687 4.61829 4.64912 4.80020 4.92213 4.92429 5.02308 5.09575 5.17174 5.18514 5.19788 5.20544 5.29070 5.41540 5.42763 5.46719 5.55509 5.66987 5.69499 5.75052 5.78998 5.79710 5.86950 5.93501 6.20993 6.28487 6.38382 6.46200 6.53194 6.68697 6.70563 6.71236 6.95218 7.20962 7.34516 7.41068 7.63679 7.70163 7.87362 8.09104 8.51778 8.95747 9.60410 10.67750 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011606 B = 0.002469 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.016614 B =11338.071350 C =13092.698709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.077 3.923 3 C -0.149 4.149 4 N -0.534 5.534 5 C 0.014 3.986 6 C 0.041 3.959 7 C 0.124 3.876 8 N -0.737 5.737 9 C 0.539 3.461 10 O -0.510 6.510 11 C -0.264 4.264 12 C 0.025 3.975 13 C -0.181 4.181 14 C 0.011 3.989 15 C -0.202 4.202 16 C 0.177 3.823 17 O -0.213 6.213 18 C -0.387 4.387 19 H 0.108 0.892 20 C 0.063 3.937 21 N -0.878 5.878 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.238 4.238 27 C -0.044 4.044 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.394 0.606 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.103 0.897 46 H 0.114 0.886 47 H 0.280 0.720 48 H 0.132 0.868 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 8.686 -27.334 28.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 C -0.206 4.206 4 N -0.259 5.259 5 C -0.134 4.134 6 C -0.087 4.087 7 C 0.000 4.000 8 N -0.391 5.391 9 C 0.329 3.671 10 O -0.386 6.386 11 C -0.285 4.285 12 C 0.006 3.994 13 C -0.182 4.182 14 C -0.008 4.008 15 C -0.221 4.221 16 C 0.124 3.876 17 O -0.117 6.117 18 C -0.462 4.462 19 H 0.125 0.875 20 C -0.140 4.140 21 N -0.515 5.515 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.257 4.257 27 C -0.062 4.062 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.227 0.773 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.121 0.879 46 H 0.132 0.868 47 H 0.090 0.910 48 H 0.150 0.850 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.191 8.723 -25.875 27.393 hybrid contribution 0.018 -0.144 -0.973 0.984 sum -2.173 8.579 -26.847 28.268 Atomic orbital electron populations 1.21929 0.94101 1.02187 1.02411 1.21625 0.95875 0.95081 0.90553 1.21927 1.01035 0.95214 1.02433 1.61912 1.07081 1.17596 1.39299 1.22566 1.01009 0.88402 1.01374 1.22331 0.88237 1.01679 0.96436 1.21188 0.79971 1.01933 0.96904 1.45899 1.06835 1.69401 1.16942 1.18475 0.88790 0.77582 0.82299 1.91000 1.68395 1.46091 1.33144 1.22613 0.93028 1.13725 0.99133 1.22349 0.98271 0.87270 0.91524 1.18358 1.04102 1.00494 0.95266 1.20447 0.91089 0.95922 0.93333 1.20007 1.05620 1.01441 0.95067 1.19274 0.90087 0.93036 0.85213 1.83505 1.59445 1.43010 1.25753 1.20829 1.22814 0.99777 1.02829 0.87478 1.24491 0.97682 0.97050 0.94819 1.69629 1.40613 1.27490 1.13777 0.86180 0.81164 0.82283 0.77300 1.19814 1.20779 1.18289 1.21067 1.02022 1.02990 0.99653 1.20791 0.97122 0.95989 0.92291 0.91503 0.92180 0.92358 0.94347 0.92187 0.91473 0.92499 0.90634 0.90682 0.95655 0.89737 0.94482 0.91655 0.90643 0.77304 0.86089 0.85905 0.87901 0.86820 0.91031 0.85039 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.84 37.16 0.33 -0.61 16 2 C 0.08 0.54 2.68 -67.71 -0.18 0.36 16 3 C -0.15 -0.93 8.99 37.16 0.33 -0.59 16 4 N -0.53 -4.55 4.63 -234.88 -1.09 -5.64 16 5 C 0.01 0.12 8.95 60.07 0.54 0.66 16 6 C 0.04 0.33 4.89 -3.82 -0.02 0.31 16 7 C 0.12 1.34 5.60 -4.04 -0.02 1.32 16 8 N -0.74 -7.75 5.55 -61.75 -0.34 -8.10 16 9 C 0.54 7.71 6.77 -13.04 -0.09 7.62 16 10 O -0.51 -9.79 12.17 5.18 0.06 -9.72 16 11 C -0.26 -3.18 9.90 -37.50 -0.37 -3.56 16 12 C 0.03 0.35 9.80 -37.19 -0.36 -0.02 16 13 C -0.18 -3.28 4.54 -105.03 -0.48 -3.76 16 14 C 0.01 0.21 6.59 -39.15 -0.26 -0.05 16 15 C -0.20 -4.44 9.97 -39.47 -0.39 -4.84 16 16 C 0.18 4.37 6.66 -38.88 -0.26 4.11 16 17 O -0.21 -5.88 8.57 0.74 0.01 -5.87 16 18 C -0.39 -11.24 9.94 30.91 0.31 -10.94 16 19 H 0.11 3.17 5.41 -52.49 -0.28 2.88 16 20 C 0.06 1.81 5.49 -17.51 -0.10 1.71 16 21 N -0.88 -25.78 13.96 55.48 0.77 -25.00 16 22 Si 0.91 22.26 28.62 -169.99 -4.86 17.39 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.24 -5.46 9.14 -39.47 -0.36 -5.82 16 27 C -0.04 -0.84 9.78 -39.15 -0.38 -1.23 16 28 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.36 6.26 -51.93 -0.32 0.03 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.31 8.14 -51.92 -0.42 -0.12 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.34 6.20 -51.93 -0.32 0.02 16 35 H 0.07 0.70 6.47 -51.93 -0.34 0.36 16 36 H 0.07 0.56 6.01 -51.93 -0.31 0.24 16 37 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.08 0.60 5.83 -51.93 -0.30 0.30 16 39 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 40 H 0.07 0.81 6.55 -51.93 -0.34 0.46 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.39 2.83 8.45 -40.82 -0.34 2.48 16 43 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.10 1.81 7.02 -52.48 -0.37 1.44 16 46 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 47 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.13 3.12 5.62 -52.49 -0.29 2.83 16 49 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -33.13 392.86 -8.73 -41.86 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.44 Total: 4.48 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.77 Total: -15.32 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.66 Total: -38.74 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.07 Total: -15.60 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.86 Total: 17.39 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.13 -8.73 -41.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255638877.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.302 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds