Wall clock time and date at job start Tue Mar 31 2020 16:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46843 * 2 1 4 4 N 1.46901 * 109.47301 * 119.99622 * 2 1 3 5 5 C 1.46903 * 110.99699 * 56.04885 * 4 2 1 6 6 C 1.46898 * 110.99683 * 180.02562 * 4 2 1 7 7 C 1.53008 * 109.46743 * 170.00584 * 6 4 2 8 8 N 1.46498 * 109.46632 * 179.97438 * 7 6 4 9 9 C 1.34785 * 119.99521 * 179.97438 * 8 7 6 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31506 * 119.99512 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00019 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47192 * 89.99431 * 22 20 18 24 24 H 1.48503 * 109.47066 * 209.99637 * 22 20 18 25 25 H 1.48500 * 109.47078 * 329.99517 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.09008 * 109.46861 * 299.99698 * 1 2 3 29 29 H 1.08995 * 109.47172 * 59.99943 * 1 2 3 30 30 H 1.08999 * 109.47021 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46739 * 240.00044 * 2 1 3 32 32 H 1.09009 * 109.47316 * 299.99833 * 3 2 1 33 33 H 1.09001 * 109.47559 * 59.99934 * 3 2 1 34 34 H 1.08997 * 109.46987 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46934 * 183.95171 * 5 4 2 36 36 H 1.09000 * 109.46684 * 303.95163 * 5 4 2 37 37 H 1.08998 * 109.47154 * 63.94965 * 5 4 2 38 38 H 1.08992 * 109.47244 * 50.00351 * 6 4 2 39 39 H 1.09003 * 109.46831 * 289.99728 * 6 4 2 40 40 H 1.08992 * 109.47442 * 59.99887 * 7 6 4 41 41 H 1.09003 * 109.46758 * 299.99188 * 7 6 4 42 42 H 0.96995 * 120.00513 * 359.97438 * 8 7 6 43 43 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 44 44 H 1.07997 * 120.00191 * 168.68069 * 12 11 9 45 45 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 46 46 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 47 47 H 0.97008 * 119.99650 * 180.02562 * 21 20 18 48 48 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 49 49 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6924 1.1995 5 6 1.4731 -2.0535 1.2816 6 6 3.4882 -0.7114 1.2336 7 6 3.9601 -1.2114 2.6005 8 7 5.4245 -1.2309 2.6343 9 6 6.0675 -1.6385 3.7466 10 8 5.4314 -1.9899 4.7231 11 6 7.5295 -1.6523 3.7825 12 6 8.1740 -1.9226 4.9378 13 6 7.4289 -1.9570 6.2041 14 6 6.4796 -0.9674 6.4875 15 6 5.7810 -1.0063 7.6722 16 6 6.0243 -2.0213 8.5930 17 8 5.3370 -2.0530 9.7611 18 6 5.5323 -3.1229 10.5571 19 1 6.2715 -3.8647 10.2930 20 6 4.7839 -3.2713 11.7157 21 7 4.9749 -4.3150 12.4926 22 14 3.5050 -1.9887 12.1722 23 1 2.1967 -2.3600 11.5757 24 1 3.3747 -1.9236 13.6501 25 1 3.9269 -0.6626 11.6536 26 6 6.9707 -3.0040 8.3179 27 6 7.6700 -2.9763 7.1333 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8901 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.7950 -2.5186 2.2133 36 1 0.3843 -2.0099 1.2545 37 1 1.8343 -2.6416 0.4381 38 1 3.8687 0.2958 1.0640 39 1 3.8611 -1.3767 0.4549 40 1 3.5797 -2.2186 2.7702 41 1 3.5872 -0.5461 3.3793 42 1 5.9315 -0.9506 1.8564 43 1 8.0938 -1.4463 2.8849 44 1 9.2369 -2.1135 4.9314 45 1 6.2931 -0.1771 5.7753 46 1 5.0459 -0.2457 7.8901 47 1 4.4513 -4.4190 13.3026 48 1 7.1564 -3.7894 9.0355 49 1 8.4039 -3.7396 6.9206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255638877.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:14 Heat of formation + Delta-G solvation = -23.618203 kcal Electronic energy + Delta-G solvation = -27705.606958 eV Core-core repulsion = 23826.699546 eV Total energy + Delta-G solvation = -3878.907412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.16644 -40.51298 -39.45088 -38.27729 -35.93635 -34.64430 -34.09015 -33.14829 -31.85450 -30.61132 -29.62581 -28.12042 -27.25928 -26.22800 -24.46950 -23.61195 -22.91317 -22.24835 -21.01643 -20.39634 -19.68627 -19.12594 -18.13189 -17.52029 -16.92295 -16.61956 -16.29731 -16.17418 -15.77552 -15.70830 -15.65961 -15.44274 -15.26966 -14.76651 -14.64245 -14.34338 -14.25813 -14.17300 -13.97392 -13.72708 -13.47180 -13.13382 -13.10472 -12.86160 -12.80392 -12.67392 -12.56294 -12.49514 -12.28378 -12.02683 -11.95947 -11.90839 -11.50582 -11.33822 -11.03444 -10.71713 -10.44266 -10.03394 -9.58978 -9.33079 -8.60882 -8.52344 -6.23102 -0.02983 0.68208 1.09203 1.28006 1.34559 1.49588 2.21194 2.26469 2.48613 2.79599 3.04154 3.07552 3.23030 3.81939 3.93728 4.00177 4.03671 4.07446 4.11721 4.13498 4.18899 4.38043 4.41528 4.52720 4.53684 4.55528 4.59135 4.77993 4.80708 4.81050 4.91099 4.92356 4.94390 4.94765 5.05259 5.10241 5.18734 5.22311 5.31328 5.39868 5.40981 5.45049 5.51996 5.67750 5.78019 5.83082 5.90287 6.05365 6.11971 6.26369 6.72381 6.81878 7.45745 7.57899 8.59269 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011606 B = 0.002469 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.016614 B =11338.071350 C =13092.698709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.146 4.146 4 N -0.551 5.551 5 C 0.016 3.984 6 C 0.052 3.948 7 C 0.129 3.871 8 N -0.714 5.714 9 C 0.525 3.475 10 O -0.568 6.568 11 C -0.225 4.225 12 C 0.001 3.999 13 C -0.151 4.151 14 C 0.011 3.989 15 C -0.210 4.210 16 C 0.132 3.868 17 O -0.244 6.244 18 C -0.401 4.401 19 H 0.082 0.918 20 C 0.011 3.989 21 N -0.920 5.920 22 Si 0.970 3.030 23 H -0.268 1.268 24 H -0.261 1.261 25 H -0.265 1.265 26 C -0.253 4.253 27 C -0.053 4.053 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.099 0.901 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.416 0.584 43 H 0.177 0.823 44 H 0.169 0.831 45 H 0.125 0.875 46 H 0.116 0.884 47 H 0.286 0.714 48 H 0.109 0.891 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 10.500 -32.157 33.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 C -0.204 4.204 4 N -0.277 5.277 5 C -0.132 4.132 6 C -0.076 4.076 7 C 0.004 3.996 8 N -0.368 5.368 9 C 0.316 3.684 10 O -0.449 6.449 11 C -0.245 4.245 12 C -0.019 4.019 13 C -0.152 4.152 14 C -0.007 4.007 15 C -0.229 4.229 16 C 0.083 3.917 17 O -0.152 6.152 18 C -0.477 4.477 19 H 0.100 0.900 20 C -0.188 4.188 21 N -0.561 5.561 22 Si 0.792 3.208 23 H -0.193 1.193 24 H -0.186 1.186 25 H -0.190 1.190 26 C -0.272 4.272 27 C -0.071 4.071 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.051 0.949 38 H 0.117 0.883 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.253 0.747 43 H 0.194 0.806 44 H 0.186 0.814 45 H 0.143 0.857 46 H 0.134 0.866 47 H 0.095 0.905 48 H 0.127 0.873 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.848 10.566 -30.800 32.573 hybrid contribution -0.263 -0.646 -0.035 0.698 sum -1.111 9.921 -30.835 32.410 Atomic orbital electron populations 1.21924 0.93834 1.02231 1.02516 1.21696 0.96156 0.95360 0.89986 1.21917 1.01357 0.94612 1.02492 1.61899 1.07445 1.17742 1.40578 1.22517 1.01387 0.88513 1.00747 1.22232 0.88132 1.02579 0.94655 1.21090 0.80046 1.00393 0.98082 1.45711 1.06872 1.67397 1.16778 1.19116 0.90061 0.76981 0.82266 1.91005 1.69728 1.48752 1.35377 1.23076 0.91577 1.09172 1.00709 1.22584 1.00216 0.89653 0.89421 1.18937 1.01747 0.97922 0.96549 1.20736 0.90798 0.96859 0.92315 1.20243 1.06252 1.00843 0.95586 1.19745 0.91405 0.94993 0.85547 1.83450 1.61645 1.42841 1.27239 1.20760 1.22845 1.00283 1.03799 0.90039 1.25282 0.99671 0.99149 0.94666 1.69704 1.42369 1.29292 1.14718 0.85243 0.78460 0.79188 0.77948 1.19313 1.18585 1.18951 1.21119 1.02766 1.02334 1.01017 1.21161 0.97379 0.97360 0.91191 0.92670 0.90790 0.92372 0.93648 0.90832 0.92738 0.91930 0.92378 0.90202 0.94873 0.88313 0.93082 0.93543 0.93157 0.74697 0.80586 0.81385 0.85734 0.86624 0.90474 0.87276 0.83886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.84 71.98 0.64 -0.98 16 2 C 0.08 0.89 2.68 44.92 0.12 1.01 16 3 C -0.15 -1.46 8.99 71.98 0.65 -0.81 16 4 N -0.55 -8.53 4.63 -897.03 -4.15 -12.68 16 5 C 0.02 0.25 8.95 127.69 1.14 1.40 16 6 C 0.05 0.70 4.89 86.31 0.42 1.12 16 7 C 0.13 2.58 5.60 86.38 0.48 3.06 16 8 N -0.71 -12.38 5.55 -467.49 -2.60 -14.98 16 9 C 0.53 13.14 6.77 86.32 0.58 13.72 16 10 O -0.57 -21.02 12.17 -4.40 -0.05 -21.07 16 11 C -0.22 -4.04 9.90 23.62 0.23 -3.81 16 12 C 0.00 0.01 9.80 23.82 0.23 0.25 16 13 C -0.15 -5.10 4.54 -20.13 -0.09 -5.19 16 14 C 0.01 0.42 6.59 22.55 0.15 0.57 16 15 C -0.21 -9.52 9.97 22.35 0.22 -9.30 16 16 C 0.13 6.94 6.66 22.72 0.15 7.09 16 17 O -0.24 -14.46 8.57 -20.28 -0.17 -14.63 16 18 C -0.40 -25.07 9.94 67.94 0.68 -24.39 16 19 H 0.08 5.31 5.41 -2.91 -0.02 5.30 16 20 C 0.01 0.66 5.49 84.86 0.47 1.13 16 21 N -0.92 -56.91 13.96 21.62 0.30 -56.61 16 22 Si 0.97 47.95 28.62 68.60 1.96 49.92 16 23 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 26 C -0.25 -12.25 9.14 22.34 0.20 -12.05 16 27 C -0.05 -2.01 9.78 22.55 0.22 -1.79 16 28 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.63 6.26 -2.39 -0.01 0.62 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.54 6.20 -2.39 -0.01 0.53 16 35 H 0.06 1.09 6.47 -2.39 -0.02 1.08 16 36 H 0.08 1.13 6.01 -2.39 -0.01 1.12 16 37 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.10 1.06 5.83 -2.39 -0.01 1.04 16 39 H 0.05 0.57 8.12 -2.39 -0.02 0.55 16 40 H 0.05 1.13 6.55 -2.39 -0.02 1.12 16 41 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.42 3.72 8.45 -92.71 -0.78 2.94 16 43 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 44 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 45 H 0.12 4.10 7.02 -2.91 -0.02 4.08 16 46 H 0.12 5.03 8.06 -2.91 -0.02 5.00 16 47 H 0.29 16.13 8.31 -92.70 -0.77 15.36 16 48 H 0.11 5.68 5.62 -2.91 -0.02 5.67 16 49 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -79.83 392.86 1.97 -77.87 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.18 Total: 21.18 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 6.50 Total: -28.99 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -6.45 Total: -84.27 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.23 Total: -35.70 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.96 Total: 49.92 kcal Total: -79.83 1.97 -77.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255638877.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.248 kcal (2) G-P(sol) polarization free energy of solvation -79.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds