Wall clock time and date at job start Tue Mar 31 2020 16:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46657 * 2 1 4 4 N 1.46904 * 109.46743 * 180.02562 * 3 2 1 5 5 C 1.46898 * 110.99624 * 170.00046 * 4 3 2 6 6 C 1.53238 * 109.33887 * 172.74707 * 5 4 3 7 7 N 1.47078 * 108.52217 * 53.82970 * 6 5 4 8 8 C 1.34774 * 120.88321 * 128.79462 * 7 6 5 9 9 O 1.21280 * 119.99812 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00269 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47350 * 179.97438 * 10 8 7 12 12 C 1.38297 * 119.93061 * 269.73027 * 11 10 8 13 13 C 1.38105 * 120.06953 * 179.72648 * 12 11 10 14 14 C 1.38888 * 119.92465 * 0.56479 * 13 12 11 15 15 O 1.35753 * 120.06220 * 179.68686 * 14 13 12 16 16 C 1.34836 * 116.99499 * 174.48873 * 15 14 13 17 17 H 1.08001 * 119.99972 * 5.05493 * 16 15 14 18 18 C 1.38656 * 119.99804 * 185.05245 * 16 15 14 19 19 N 1.31561 * 120.00117 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99994 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47173 * 0.02562 * 20 18 16 22 22 H 1.48491 * 109.47255 * 120.00177 * 20 18 16 23 23 H 1.48501 * 109.47187 * 240.00243 * 20 18 16 24 24 C 1.38868 * 119.86395 * 359.70555 * 14 13 12 25 25 C 1.38099 * 119.93534 * 0.02562 * 24 14 13 26 26 C 1.47086 * 118.23488 * 308.81542 * 7 6 5 27 27 C 1.46898 * 110.99810 * 45.70082 * 4 3 2 28 28 H 1.08996 * 109.47475 * 59.99888 * 1 2 3 29 29 H 1.09006 * 109.46811 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47123 * 299.99562 * 1 2 3 31 31 H 1.09006 * 109.47015 * 240.00606 * 2 1 3 32 32 H 1.08996 * 109.47475 * 120.00112 * 2 1 3 33 33 H 1.08996 * 109.46996 * 60.00360 * 3 2 1 34 34 H 1.08996 * 109.47270 * 300.00238 * 3 2 1 35 35 H 1.09001 * 109.49563 * 52.78927 * 5 4 3 36 36 H 1.08996 * 109.49290 * 292.70783 * 5 4 3 37 37 H 1.09000 * 109.63165 * 173.54414 * 6 5 4 38 38 H 1.09003 * 109.62696 * 293.92417 * 6 5 4 39 39 H 1.08998 * 109.47260 * 299.99997 * 10 8 7 40 40 H 1.09005 * 109.46767 * 60.00058 * 10 8 7 41 41 H 1.07996 * 119.96821 * 359.97438 * 12 11 10 42 42 H 1.07996 * 120.03795 * 180.27047 * 13 12 11 43 43 H 0.96990 * 119.99768 * 179.97438 * 19 18 16 44 44 H 1.08008 * 120.03206 * 179.97438 * 24 14 13 45 45 H 1.07998 * 119.96920 * 179.97438 * 25 24 14 46 46 H 1.09007 * 109.62583 * 170.89594 * 26 7 6 47 47 H 1.08993 * 109.62873 * 291.47245 * 26 7 6 48 48 H 1.08992 * 109.49497 * 67.29325 * 27 4 3 49 49 H 1.09000 * 109.51579 * 307.22195 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0352 2.7933 -0.2388 6 6 5.5562 2.7854 -0.0527 7 7 6.1265 1.7356 -0.9105 8 6 7.1444 2.0064 -1.7513 9 8 7.6027 3.1279 -1.8073 10 6 7.7140 0.9154 -2.6210 11 6 8.8325 1.4753 -3.4613 12 6 8.5597 2.0032 -4.7101 13 6 9.5817 2.5223 -5.4804 14 6 10.8864 2.5030 -5.0044 15 8 11.8941 3.0067 -5.7619 16 6 13.1166 3.0616 -5.1959 17 1 13.2769 2.6394 -4.2148 18 6 14.1680 3.6601 -5.8733 19 7 13.9726 4.1749 -7.0682 20 14 15.8616 3.7369 -5.0889 21 1 15.8175 3.0920 -3.7519 22 1 16.8387 3.0236 -5.9500 23 1 16.2749 5.1555 -4.9413 24 6 11.1579 1.9671 -3.7524 25 6 10.1307 1.4547 -2.9847 26 6 5.5560 0.3825 -0.8268 27 6 4.0350 0.4850 -0.9825 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.5857 3.4890 0.4698 36 1 3.7948 3.1032 -1.2557 37 1 5.9652 3.7544 -0.3388 38 1 5.7964 2.5804 0.9906 39 1 8.0986 0.1127 -1.9918 40 1 6.9320 0.5240 -3.2717 41 1 7.5457 2.0132 -5.0818 42 1 9.3674 2.9384 -6.4536 43 1 14.7080 4.5939 -7.5419 44 1 12.1715 1.9504 -3.3798 45 1 10.3413 1.0374 -2.0111 46 1 5.9649 -0.2373 -1.6249 47 1 5.7962 -0.0569 0.1413 48 1 3.7946 0.8270 -1.9891 49 1 3.5854 -0.4935 -0.8138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264664822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:16 Heat of formation + Delta-G solvation = -28.949922 kcal Electronic energy + Delta-G solvation = -27834.266892 eV Core-core repulsion = 23955.128279 eV Total energy + Delta-G solvation = -3879.138613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.38753 -39.05196 -38.35512 -36.47460 -35.51721 -33.23362 -32.43183 -31.76615 -30.93663 -30.09617 -28.39098 -26.60098 -25.24874 -24.67708 -24.19572 -22.03727 -21.91670 -21.04097 -20.45548 -18.93877 -17.92970 -17.29433 -16.92558 -16.10329 -15.84204 -15.70001 -15.46260 -15.34590 -14.80021 -14.53566 -14.38766 -14.22178 -13.74421 -13.60570 -13.54354 -13.33076 -13.20095 -12.82668 -12.65737 -12.53502 -12.30274 -12.15136 -11.97274 -11.80915 -11.68522 -11.46317 -11.43838 -11.25975 -11.21544 -10.91149 -10.79703 -10.67834 -10.55295 -10.38087 -9.62817 -9.27039 -8.98106 -8.77639 -8.56697 -8.09555 -7.10825 -6.40138 -3.98550 2.29552 2.31083 2.76968 2.92813 3.15903 3.17628 3.22946 3.46032 4.01143 4.35547 4.39776 4.50825 4.59255 4.66073 4.82780 4.87644 4.88851 4.91674 5.02535 5.12967 5.13962 5.16570 5.18650 5.27593 5.29672 5.34037 5.37380 5.41186 5.51549 5.57247 5.60243 5.68484 5.69642 5.77865 5.78229 5.79038 5.89739 6.26811 6.36152 6.47192 6.58877 6.61871 6.75674 6.96901 7.10927 7.29196 7.37336 7.42710 7.50392 7.89408 8.05471 8.31047 9.05820 9.76724 10.78178 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.033981 B = 0.001896 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.782846 B =14763.179721 C =14965.967074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.055 3.945 4 N -0.538 5.538 5 C 0.042 3.958 6 C 0.117 3.883 7 N -0.624 5.624 8 C 0.512 3.488 9 O -0.520 6.520 10 C -0.078 4.078 11 C -0.170 4.170 12 C -0.060 4.060 13 C -0.191 4.191 14 C 0.156 3.844 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.232 4.232 25 C -0.056 4.056 26 C 0.113 3.887 27 C 0.032 3.968 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.269 0.731 44 H 0.127 0.873 45 H 0.104 0.896 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.039 0.961 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.114 -10.058 15.031 30.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.073 4.073 4 N -0.263 5.263 5 C -0.086 4.086 6 C -0.006 4.006 7 N -0.361 5.361 8 C 0.301 3.699 9 O -0.394 6.394 10 C -0.118 4.118 11 C -0.171 4.171 12 C -0.078 4.078 13 C -0.210 4.210 14 C 0.103 3.897 15 O -0.083 6.083 16 C -0.466 4.466 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.251 4.251 25 C -0.075 4.075 26 C -0.011 4.011 27 C -0.096 4.096 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.122 0.878 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.057 0.943 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.521 -9.364 15.033 29.443 hybrid contribution 0.438 0.305 -0.281 0.603 sum -23.083 -9.059 14.752 28.853 Atomic orbital electron populations 1.21736 0.95422 1.01908 1.01881 1.21710 0.95880 0.96357 1.02739 1.22186 0.86797 0.97346 1.00956 1.62022 1.07506 1.07175 1.49618 1.22493 0.95627 0.90118 1.00380 1.21595 0.91406 0.92953 0.94666 1.48264 1.35556 1.10567 1.41704 1.21078 0.78738 0.90484 0.79610 1.90736 1.58810 1.23353 1.66491 1.20429 0.97705 0.96365 0.97270 1.18643 0.92991 1.09423 0.96028 1.20383 0.97221 0.96699 0.93535 1.20151 0.90418 1.08667 1.01814 1.19376 0.89038 0.91410 0.89888 1.83979 1.15890 1.70391 1.38001 1.21383 0.83079 1.39057 1.03128 0.89028 1.25287 0.99535 0.95881 0.95877 1.70051 1.32615 1.35393 1.11828 0.85646 0.80459 0.78386 0.78927 1.19112 1.20190 1.20164 1.21106 0.99862 1.07579 0.96568 1.20506 0.92029 0.97364 0.97557 1.21828 0.92321 0.83923 1.03030 1.22650 0.95312 0.97718 0.93953 0.92812 0.92429 0.92586 0.91577 0.90947 0.90532 0.94860 0.89651 0.94296 0.88655 0.91054 0.89025 0.89169 0.87516 0.86571 0.92141 0.85573 0.87832 0.89087 0.90660 0.94298 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.13 -0.65 5.19 -26.72 -0.14 -0.79 16 3 C 0.05 0.34 5.27 -3.82 -0.02 0.32 16 4 N -0.54 -4.07 4.78 -234.32 -1.12 -5.19 16 5 C 0.04 0.36 5.58 -3.70 -0.02 0.34 16 6 C 0.12 1.21 6.60 -3.60 -0.02 1.18 16 7 N -0.62 -6.95 3.01 -172.46 -0.52 -7.46 16 8 C 0.51 7.50 7.70 -10.99 -0.08 7.41 16 9 O -0.52 -10.15 15.49 5.56 0.09 -10.06 16 10 C -0.08 -1.02 4.19 -29.04 -0.12 -1.14 16 11 C -0.17 -3.04 4.38 -104.58 -0.46 -3.50 16 12 C -0.06 -1.14 9.69 -39.61 -0.38 -1.53 16 13 C -0.19 -4.28 9.99 -39.39 -0.39 -4.67 16 14 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 15 O -0.18 -5.29 9.76 0.02 0.00 -5.29 16 16 C -0.39 -11.25 9.49 30.89 0.29 -10.96 16 17 H 0.09 2.46 5.20 -52.49 -0.27 2.18 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 20 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 C -0.23 -5.32 9.17 -39.40 -0.36 -5.68 16 25 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 26 C 0.11 0.86 6.50 -3.60 -0.02 0.84 16 27 C 0.03 0.22 5.04 -3.70 -0.02 0.21 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.33 6.18 -51.93 -0.32 0.01 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.03 0.22 8.08 -51.93 -0.42 -0.20 16 35 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 1.16 7.06 -51.93 -0.37 0.79 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.98 7.94 -51.93 -0.41 0.57 16 40 H 0.09 0.95 7.60 -51.93 -0.39 0.55 16 41 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.13 2.89 5.64 -52.48 -0.30 2.59 16 45 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 46 H 0.09 0.57 6.02 -51.93 -0.31 0.26 16 47 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.09 0.49 5.73 -51.93 -0.30 0.20 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -34.64 391.43 -9.77 -44.41 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.72 Total: 1.85 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.13 Total: -15.05 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.88 Total: -37.80 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.09 Total: -15.36 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.64 -9.77 -44.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264664822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.462 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds