Wall clock time and date at job start Tue Mar 31 2020 16:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46657 * 2 1 4 4 N 1.46904 * 109.46743 * 180.02562 * 3 2 1 5 5 C 1.46898 * 110.99624 * 170.00046 * 4 3 2 6 6 C 1.53238 * 109.33887 * 172.74707 * 5 4 3 7 7 N 1.47078 * 108.52217 * 53.82970 * 6 5 4 8 8 C 1.34774 * 120.88321 * 128.79462 * 7 6 5 9 9 O 1.21280 * 119.99812 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00269 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47350 * 179.97438 * 10 8 7 12 12 C 1.38297 * 119.93061 * 269.73027 * 11 10 8 13 13 C 1.38105 * 120.06953 * 179.72648 * 12 11 10 14 14 C 1.38888 * 119.92465 * 0.56479 * 13 12 11 15 15 O 1.35753 * 120.06220 * 179.68686 * 14 13 12 16 16 C 1.34836 * 116.99499 * 174.48873 * 15 14 13 17 17 H 1.08001 * 119.99972 * 5.05493 * 16 15 14 18 18 C 1.38656 * 119.99804 * 185.05245 * 16 15 14 19 19 N 1.31561 * 120.00117 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99994 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47173 * 0.02562 * 20 18 16 22 22 H 1.48491 * 109.47255 * 120.00177 * 20 18 16 23 23 H 1.48501 * 109.47187 * 240.00243 * 20 18 16 24 24 C 1.38868 * 119.86395 * 359.70555 * 14 13 12 25 25 C 1.38099 * 119.93534 * 0.02562 * 24 14 13 26 26 C 1.47086 * 118.23488 * 308.81542 * 7 6 5 27 27 C 1.46898 * 110.99810 * 45.70082 * 4 3 2 28 28 H 1.08996 * 109.47475 * 59.99888 * 1 2 3 29 29 H 1.09006 * 109.46811 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47123 * 299.99562 * 1 2 3 31 31 H 1.09006 * 109.47015 * 240.00606 * 2 1 3 32 32 H 1.08996 * 109.47475 * 120.00112 * 2 1 3 33 33 H 1.08996 * 109.46996 * 60.00360 * 3 2 1 34 34 H 1.08996 * 109.47270 * 300.00238 * 3 2 1 35 35 H 1.09001 * 109.49563 * 52.78927 * 5 4 3 36 36 H 1.08996 * 109.49290 * 292.70783 * 5 4 3 37 37 H 1.09000 * 109.63165 * 173.54414 * 6 5 4 38 38 H 1.09003 * 109.62696 * 293.92417 * 6 5 4 39 39 H 1.08998 * 109.47260 * 299.99997 * 10 8 7 40 40 H 1.09005 * 109.46767 * 60.00058 * 10 8 7 41 41 H 1.07996 * 119.96821 * 359.97438 * 12 11 10 42 42 H 1.07996 * 120.03795 * 180.27047 * 13 12 11 43 43 H 0.96990 * 119.99768 * 179.97438 * 19 18 16 44 44 H 1.08008 * 120.03206 * 179.97438 * 24 14 13 45 45 H 1.07998 * 119.96920 * 179.97438 * 25 24 14 46 46 H 1.09007 * 109.62583 * 170.89594 * 26 7 6 47 47 H 1.08993 * 109.62873 * 291.47245 * 26 7 6 48 48 H 1.08992 * 109.49497 * 67.29325 * 27 4 3 49 49 H 1.09000 * 109.51579 * 307.22195 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0352 2.7933 -0.2388 6 6 5.5562 2.7854 -0.0527 7 7 6.1265 1.7356 -0.9105 8 6 7.1444 2.0064 -1.7513 9 8 7.6027 3.1279 -1.8073 10 6 7.7140 0.9154 -2.6210 11 6 8.8325 1.4753 -3.4613 12 6 8.5597 2.0032 -4.7101 13 6 9.5817 2.5223 -5.4804 14 6 10.8864 2.5030 -5.0044 15 8 11.8941 3.0067 -5.7619 16 6 13.1166 3.0616 -5.1959 17 1 13.2769 2.6394 -4.2148 18 6 14.1680 3.6601 -5.8733 19 7 13.9726 4.1749 -7.0682 20 14 15.8616 3.7369 -5.0889 21 1 15.8175 3.0920 -3.7519 22 1 16.8387 3.0236 -5.9500 23 1 16.2749 5.1555 -4.9413 24 6 11.1579 1.9671 -3.7524 25 6 10.1307 1.4547 -2.9847 26 6 5.5560 0.3825 -0.8268 27 6 4.0350 0.4850 -0.9825 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.5857 3.4890 0.4698 36 1 3.7948 3.1032 -1.2557 37 1 5.9652 3.7544 -0.3388 38 1 5.7964 2.5804 0.9906 39 1 8.0986 0.1127 -1.9918 40 1 6.9320 0.5240 -3.2717 41 1 7.5457 2.0132 -5.0818 42 1 9.3674 2.9384 -6.4536 43 1 14.7080 4.5939 -7.5419 44 1 12.1715 1.9504 -3.3798 45 1 10.3413 1.0374 -2.0111 46 1 5.9649 -0.2373 -1.6249 47 1 5.7962 -0.0569 0.1413 48 1 3.7946 0.8270 -1.9891 49 1 3.5854 -0.4935 -0.8138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264664822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:15 Heat of formation + Delta-G solvation = -51.964178 kcal Electronic energy + Delta-G solvation = -27835.264865 eV Core-core repulsion = 23955.128279 eV Total energy + Delta-G solvation = -3880.136586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.39067 -40.64559 -39.37806 -38.16019 -36.32238 -34.42517 -33.86777 -32.88552 -31.94827 -31.77319 -29.24961 -28.00052 -26.99088 -25.42386 -24.85396 -23.64408 -23.00808 -21.99283 -21.43667 -19.91125 -19.79651 -18.83504 -18.24399 -17.05394 -16.76974 -16.42013 -16.34869 -16.28719 -16.05178 -15.93377 -15.73377 -15.50902 -15.29243 -15.01431 -14.63098 -14.43505 -14.27921 -14.04525 -13.87822 -13.59493 -13.43623 -12.99311 -12.91133 -12.80350 -12.63501 -12.58224 -12.50447 -12.34689 -12.26102 -12.16307 -12.09132 -12.03138 -11.70441 -11.36308 -11.18312 -10.88952 -10.71371 -9.78926 -9.76651 -9.25982 -8.90471 -8.47869 -6.16055 0.60651 0.66292 1.33659 1.42320 1.52561 1.68588 2.01679 2.17274 2.81361 2.88943 3.14831 3.51613 3.69881 3.82267 3.93492 3.97778 4.03515 4.09574 4.14682 4.18865 4.26196 4.35923 4.39833 4.45253 4.46444 4.54402 4.59660 4.64923 4.68846 4.75588 4.77553 4.79347 4.86363 4.92043 4.97013 5.06970 5.09772 5.14440 5.22644 5.29592 5.32850 5.41957 5.50758 5.57427 5.71072 5.77052 6.01118 6.02546 6.05087 6.21556 6.45701 6.96755 7.24922 7.77954 8.75842 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.033981 B = 0.001896 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.782846 B =14763.179721 C =14965.967074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.055 3.945 4 N -0.542 5.542 5 C 0.051 3.949 6 C 0.115 3.885 7 N -0.616 5.616 8 C 0.510 3.490 9 O -0.582 6.582 10 C -0.075 4.075 11 C -0.145 4.145 12 C -0.058 4.058 13 C -0.206 4.206 14 C 0.112 3.888 15 O -0.234 6.234 16 C -0.414 4.414 17 H 0.100 0.900 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.020 2.980 21 H -0.252 1.252 22 H -0.265 1.265 23 H -0.269 1.269 24 C -0.243 4.243 25 C -0.060 4.060 26 C 0.106 3.894 27 C 0.032 3.968 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.027 0.973 35 H 0.097 0.903 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.273 0.727 44 H 0.118 0.882 45 H 0.138 0.862 46 H 0.114 0.886 47 H 0.088 0.912 48 H 0.031 0.969 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.360 -12.800 17.743 34.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.072 4.072 4 N -0.267 5.267 5 C -0.078 4.078 6 C -0.008 4.008 7 N -0.350 5.350 8 C 0.300 3.700 9 O -0.462 6.462 10 C -0.114 4.114 11 C -0.146 4.146 12 C -0.076 4.076 13 C -0.225 4.225 14 C 0.062 3.938 15 O -0.141 6.141 16 C -0.490 4.490 17 H 0.118 0.882 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.840 3.160 21 H -0.176 1.176 22 H -0.190 1.190 23 H -0.194 1.194 24 C -0.263 4.263 25 C -0.078 4.078 26 C -0.016 4.016 27 C -0.096 4.096 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.045 0.955 35 H 0.116 0.884 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.162 0.838 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.156 0.844 46 H 0.132 0.868 47 H 0.106 0.894 48 H 0.049 0.951 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -25.860 -12.175 17.796 33.670 hybrid contribution 0.726 1.022 -0.943 1.569 sum -25.134 -11.153 16.853 32.251 Atomic orbital electron populations 1.21727 0.95042 1.02268 1.01834 1.21668 0.96167 0.95387 1.02921 1.22217 0.85932 0.98257 1.00793 1.62053 1.08311 1.06530 1.49795 1.22377 0.94278 0.91229 0.99943 1.21618 0.92549 0.91807 0.94851 1.48319 1.34274 1.12187 1.40254 1.21251 0.79063 0.89762 0.79917 1.90737 1.61082 1.25701 1.68646 1.20555 0.96914 0.96429 0.97543 1.19249 0.94026 1.05724 0.95580 1.20848 0.97941 0.95190 0.93630 1.20435 0.90377 1.09298 1.02415 1.19927 0.89469 0.93093 0.91308 1.83939 1.16866 1.73304 1.39954 1.21872 0.83655 1.39726 1.03780 0.88243 1.26620 1.04046 0.95086 0.96390 1.70195 1.34304 1.37578 1.13896 0.84509 0.74293 0.78772 0.78473 1.17559 1.18980 1.19419 1.21228 1.00700 1.08089 0.96241 1.20927 0.91897 0.96538 0.98413 1.22168 0.92650 0.82042 1.04710 1.22715 0.94932 0.98563 0.93368 0.93055 0.91873 0.92493 0.91155 0.90860 0.90322 0.95453 0.88445 0.95698 0.91152 0.90139 0.85317 0.85364 0.83776 0.86993 0.91839 0.86457 0.84420 0.86810 0.89357 0.95073 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 71.98 0.71 -0.25 16 2 C -0.12 -0.88 5.19 30.60 0.16 -0.72 16 3 C 0.06 0.54 5.27 86.31 0.45 1.00 16 4 N -0.54 -6.58 4.78 -895.26 -4.28 -10.86 16 5 C 0.05 0.76 5.58 86.38 0.48 1.24 16 6 C 0.11 2.18 6.60 86.35 0.57 2.75 16 7 N -0.62 -11.73 3.01 -817.93 -2.46 -14.19 16 8 C 0.51 13.37 7.70 87.66 0.68 14.05 16 9 O -0.58 -22.15 15.49 -3.03 -0.05 -22.19 16 10 C -0.08 -1.58 4.19 29.10 0.12 -1.46 16 11 C -0.14 -4.75 4.38 -19.84 -0.09 -4.84 16 12 C -0.06 -2.11 9.69 22.25 0.22 -1.89 16 13 C -0.21 -9.47 9.99 22.39 0.22 -9.24 16 14 C 0.11 5.98 6.65 22.58 0.15 6.13 16 15 O -0.23 -14.82 9.76 -22.83 -0.22 -15.04 16 16 C -0.41 -25.27 9.49 67.92 0.64 -24.62 16 17 H 0.10 5.61 5.20 -2.91 -0.02 5.60 16 18 C -0.02 -1.43 5.49 84.83 0.47 -0.97 16 19 N -0.92 -58.36 13.67 21.61 0.30 -58.07 16 20 Si 1.02 44.51 29.55 68.60 2.03 46.53 16 21 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 24 C -0.24 -11.41 9.17 22.39 0.21 -11.20 16 25 C -0.06 -2.22 9.69 22.25 0.22 -2.00 16 26 C 0.11 1.12 6.50 86.35 0.56 1.68 16 27 C 0.03 0.32 5.04 86.38 0.44 0.76 16 28 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.44 6.18 -2.38 -0.01 0.43 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.03 0.31 8.08 -2.39 -0.02 0.29 16 35 H 0.10 1.20 8.11 -2.39 -0.02 1.18 16 36 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.07 1.71 7.06 -2.39 -0.02 1.70 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.13 1.88 7.94 -2.39 -0.02 1.86 16 40 H 0.13 1.84 7.60 -2.38 -0.02 1.82 16 41 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 42 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 43 H 0.27 15.73 8.31 -92.72 -0.77 14.96 16 44 H 0.12 5.57 5.64 -2.91 -0.02 5.56 16 45 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 46 H 0.11 0.71 6.02 -2.38 -0.01 0.69 16 47 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.12 0.68 5.73 -2.39 -0.01 0.66 16 Total: -1.00 -83.02 391.43 2.46 -80.56 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.94 Total: 22.85 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 6.21 Total: -29.60 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -6.44 Total: -83.11 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -0.27 Total: -37.24 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -83.02 2.46 -80.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264664822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.596 kcal (2) G-P(sol) polarization free energy of solvation -83.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds