Wall clock time and date at job start Tue Mar 31 2020 17:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47238 * 2 1 4 4 N 1.46494 * 109.46915 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99244 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00412 * 0.02562 * 5 4 3 7 7 C 1.50711 * 119.99594 * 180.02562 * 5 4 3 8 8 N 1.46496 * 109.46978 * 180.02562 * 7 5 4 9 9 C 1.46499 * 120.00195 * 279.09731 * 8 7 5 10 10 C 1.53001 * 109.47370 * 265.30302 * 9 8 7 11 11 C 1.52993 * 109.47250 * 179.97438 * 10 9 8 12 12 C 1.34785 * 120.00035 * 99.09635 * 8 7 5 13 13 O 1.21580 * 120.00105 * 186.41189 * 12 8 7 14 14 C 1.47642 * 119.99773 * 6.42000 * 12 8 7 15 15 C 1.40016 * 119.89598 * 149.37436 * 14 12 8 16 16 C 1.36317 * 120.10448 * 180.25143 * 15 14 12 17 17 C 1.40888 * 119.89312 * 359.52254 * 16 15 14 18 18 C 1.41105 * 120.10327 * 180.22901 * 17 16 15 19 19 H 1.08003 * 119.99846 * 206.83504 * 18 17 16 20 20 C 1.40226 * 120.00029 * 26.83363 * 18 17 16 21 21 N 1.30649 * 119.99939 * 11.92512 * 20 18 17 22 22 Si 1.86804 * 120.00222 * 191.92193 * 20 18 17 23 23 H 1.48501 * 109.47034 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47120 * 119.99598 * 22 20 18 25 25 H 1.48493 * 109.47166 * 240.00204 * 22 20 18 26 26 C 1.40888 * 119.79092 * 0.49932 * 17 16 15 27 27 C 1.36312 * 119.89533 * 359.73156 * 26 17 16 28 28 H 1.08997 * 109.47008 * 59.99650 * 1 2 3 29 29 H 1.08996 * 109.47328 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47270 * 300.00177 * 1 2 3 31 31 H 1.09001 * 109.47497 * 240.00568 * 2 1 3 32 32 H 1.08998 * 109.47229 * 119.99850 * 2 1 3 33 33 H 1.09001 * 109.46413 * 59.99904 * 3 2 1 34 34 H 1.09001 * 109.46859 * 300.00604 * 3 2 1 35 35 H 0.96993 * 120.00323 * 0.02562 * 4 3 2 36 36 H 1.08995 * 109.46895 * 59.99911 * 7 5 4 37 37 H 1.08997 * 109.46989 * 300.00379 * 7 5 4 38 38 H 1.09003 * 109.46898 * 25.30290 * 9 8 7 39 39 H 1.09004 * 109.47139 * 145.30551 * 9 8 7 40 40 H 1.08998 * 109.46973 * 300.00597 * 10 9 8 41 41 H 1.09004 * 109.46787 * 60.00032 * 10 9 8 42 42 H 1.09001 * 109.47159 * 180.02562 * 11 10 9 43 43 H 1.08994 * 109.47409 * 300.00308 * 11 10 9 44 44 H 1.09004 * 109.46934 * 60.00447 * 11 10 9 45 45 H 1.07994 * 119.94618 * 359.97438 * 15 14 12 46 46 H 1.08002 * 120.05273 * 179.72283 * 16 15 14 47 47 H 0.96998 * 119.99754 * 180.02562 * 21 20 18 48 48 H 1.08004 * 120.05173 * 179.70472 * 26 17 16 49 49 H 1.07999 * 119.95114 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1788 2.6098 0.0002 6 8 3.5724 3.6601 -0.0002 7 6 5.6859 2.6098 0.0003 8 7 6.1742 3.9910 0.0004 9 6 6.2292 4.7486 -1.2523 10 6 7.6297 4.6325 -1.8574 11 6 7.6870 5.4232 -3.1659 12 6 6.5727 4.5648 1.1530 13 8 6.8671 5.7442 1.1750 14 6 6.6520 3.7610 2.3889 15 6 7.6007 4.0788 3.3685 16 6 7.6810 3.3364 4.5089 17 6 6.8009 2.2539 4.7055 18 6 6.8770 1.4855 5.8865 19 1 6.5540 0.4548 5.8818 20 6 7.3718 2.0598 7.0661 21 7 7.5427 3.3529 7.1413 22 14 7.7866 0.9762 8.5301 23 1 7.5060 -0.4421 8.1914 24 1 9.2247 1.1289 8.8673 25 1 6.9593 1.3804 9.6952 26 6 5.8484 1.9377 3.7167 27 6 5.7787 2.6830 2.5775 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9899 0.6025 0.0006 36 1 6.0492 2.0956 -0.8895 37 1 6.0492 2.0962 0.8904 38 1 5.4966 4.3469 -1.9523 39 1 6.0052 5.7966 -1.0532 40 1 8.3624 5.0341 -1.1574 41 1 7.8538 3.5845 -2.0565 42 1 8.6846 5.3402 -3.5972 43 1 6.9544 5.0213 -3.8657 44 1 7.4628 6.4713 -2.9673 45 1 8.2727 4.9107 3.2183 46 1 8.4160 3.5795 5.2619 47 1 7.8854 3.7502 7.9572 48 1 5.1748 1.1059 3.8610 49 1 5.0486 2.4416 1.8191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270300961.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:36 Heat of formation + Delta-G solvation = -45.914097 kcal Electronic energy + Delta-G solvation = -28897.460786 eV Core-core repulsion = 25017.586551 eV Total energy + Delta-G solvation = -3879.874235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.38205 -38.80369 -37.26861 -35.95559 -35.29326 -34.09415 -33.13420 -32.65163 -30.14001 -29.80201 -28.31812 -26.72951 -25.75243 -24.91382 -22.04128 -21.84651 -21.39336 -20.92769 -20.57660 -18.83436 -17.71674 -17.06983 -16.72946 -16.18482 -15.85905 -15.55106 -15.42054 -14.84125 -14.60752 -14.45830 -14.03469 -13.65638 -13.56610 -13.23043 -13.12675 -13.01873 -12.70974 -12.58413 -12.28250 -12.24399 -11.99991 -11.87223 -11.75653 -11.53943 -11.38319 -11.36942 -11.29165 -11.18804 -11.10175 -10.80235 -10.63052 -10.51451 -9.97894 -9.93296 -9.52536 -9.39062 -9.08572 -8.91331 -8.26352 -7.70342 -7.53161 -6.95466 -4.61242 2.24022 2.67085 2.89294 2.95671 2.98078 3.00871 3.05557 3.54158 3.75486 3.84375 4.51464 4.61845 4.74519 4.84785 5.00806 5.03619 5.10759 5.23055 5.38731 5.39853 5.41380 5.42396 5.43892 5.56835 5.66450 5.75390 5.77956 5.83285 5.90396 5.93204 5.96243 5.98158 6.07755 6.23774 6.31625 6.39504 6.41427 6.77783 6.82413 6.94203 7.02040 7.10508 7.41897 7.46085 7.56366 7.75299 7.84671 8.00579 8.10051 8.29851 8.43170 8.63727 8.74168 8.99622 9.95047 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008379 B = 0.003834 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.768531 B = 7301.564071 C =10162.245216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.118 3.882 4 N -0.735 5.735 5 C 0.493 3.507 6 O -0.524 6.524 7 C 0.063 3.937 8 N -0.600 5.600 9 C 0.124 3.876 10 C -0.140 4.140 11 C -0.147 4.147 12 C 0.579 3.421 13 O -0.557 6.557 14 C -0.273 4.273 15 C -0.041 4.041 16 C -0.173 4.173 17 C 0.125 3.875 18 C -0.445 4.445 19 H 0.083 0.917 20 C 0.071 3.929 21 N -0.776 5.776 22 Si 0.915 3.085 23 H -0.258 1.258 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.229 4.229 27 C -0.079 4.079 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.401 0.599 36 H 0.093 0.907 37 H 0.151 0.849 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.098 0.902 46 H 0.126 0.874 47 H 0.286 0.714 48 H 0.097 0.903 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.009 -8.333 -13.532 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C -0.005 4.005 4 N -0.389 5.389 5 C 0.278 3.722 6 O -0.399 6.399 7 C -0.064 4.064 8 N -0.332 5.332 9 C 0.002 3.998 10 C -0.179 4.179 11 C -0.204 4.204 12 C 0.374 3.626 13 O -0.437 6.437 14 C -0.277 4.277 15 C -0.060 4.060 16 C -0.193 4.193 17 C 0.122 3.878 18 C -0.473 4.473 19 H 0.101 0.899 20 C -0.149 4.149 21 N -0.400 5.400 22 Si 0.739 3.261 23 H -0.182 1.182 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.248 4.248 27 C -0.097 4.097 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.235 0.765 36 H 0.111 0.889 37 H 0.168 0.832 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.116 0.884 46 H 0.144 0.856 47 H 0.097 0.903 48 H 0.115 0.885 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.226 -6.696 -13.348 15.821 hybrid contribution 0.154 -0.854 0.701 1.115 sum -5.072 -7.549 -12.647 15.578 Atomic orbital electron populations 1.21676 0.94700 1.02041 1.02325 1.21738 0.96889 0.95925 1.02820 1.21372 0.79767 0.97020 1.02378 1.46042 1.07280 1.08787 1.76793 1.21434 0.91167 0.83776 0.75859 1.90727 1.70141 1.31239 1.47798 1.22339 0.90064 0.86766 1.07271 1.47347 1.65363 1.12509 1.07974 1.21324 0.95894 0.97946 0.84674 1.21910 0.98369 1.00369 0.97222 1.21674 1.01368 1.00507 0.96899 1.18667 0.74515 0.86601 0.82802 1.90648 1.51177 1.16072 1.85780 1.18921 1.08289 1.03422 0.97103 1.20443 0.95970 0.96906 0.92686 1.21125 1.01856 0.99364 0.96929 1.17790 0.87847 0.90778 0.91354 1.19829 1.35140 0.98986 0.93328 0.89860 1.26091 0.92724 0.95197 1.00915 1.69733 1.30569 1.11196 1.28518 0.86139 0.79057 0.80987 0.79924 1.18196 1.19460 1.19714 1.20688 1.02820 1.04264 0.97063 1.20912 0.97266 0.94570 0.96961 0.92512 0.92248 0.92250 0.91406 0.90992 0.91433 0.91785 0.76495 0.88891 0.83242 0.91485 0.90203 0.91340 0.92181 0.92719 0.92947 0.92531 0.88406 0.85640 0.90309 0.88498 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.14 -1.01 6.05 -26.73 -0.16 -1.17 16 3 C 0.12 1.24 5.67 -4.04 -0.02 1.22 16 4 N -0.73 -8.19 5.56 -60.29 -0.33 -8.52 16 5 C 0.49 7.45 5.93 -10.98 -0.07 7.39 16 6 O -0.52 -10.29 16.27 5.56 0.09 -10.20 16 7 C 0.06 0.91 5.35 -5.19 -0.03 0.88 16 8 N -0.60 -10.76 2.03 -176.25 -0.36 -11.12 16 9 C 0.12 1.94 5.23 -4.04 -0.02 1.92 16 10 C -0.14 -1.85 6.23 -26.73 -0.17 -2.02 16 11 C -0.15 -1.56 9.91 37.15 0.37 -1.20 16 12 C 0.58 12.98 7.41 -12.42 -0.09 12.89 16 13 O -0.56 -14.08 16.33 5.29 0.09 -13.99 16 14 C -0.27 -6.34 5.59 -104.73 -0.59 -6.93 16 15 C -0.04 -1.00 9.52 -39.61 -0.38 -1.37 16 16 C -0.17 -4.40 8.61 -39.27 -0.34 -4.74 16 17 C 0.13 3.15 5.57 -106.80 -0.60 2.55 16 18 C -0.44 -10.92 9.06 -37.75 -0.34 -11.26 16 19 H 0.08 1.92 7.88 -52.48 -0.41 1.51 16 20 C 0.07 1.67 5.24 -17.31 -0.09 1.58 16 21 N -0.78 -19.13 10.76 55.56 0.60 -18.53 16 22 Si 0.92 17.36 29.58 -169.99 -5.03 12.33 16 23 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 24 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 25 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 26 C -0.23 -5.19 9.73 -39.27 -0.38 -5.57 16 27 C -0.08 -1.68 7.39 -39.61 -0.29 -1.98 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.40 3.22 8.47 -40.82 -0.35 2.87 16 36 H 0.09 0.97 8.13 -51.93 -0.42 0.55 16 37 H 0.15 2.28 4.01 -52.09 -0.21 2.07 16 38 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 39 H 0.08 1.42 7.48 -51.93 -0.39 1.03 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 2.34 7.92 -52.49 -0.42 1.93 16 46 H 0.13 3.26 6.10 -52.49 -0.32 2.94 16 47 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 48 H 0.10 2.00 8.06 -52.48 -0.42 1.58 16 49 H 0.10 1.93 3.20 -52.49 -0.17 1.76 16 LS Contribution 399.55 15.07 6.02 6.02 Total: -1.00 -32.00 399.55 -9.48 -41.48 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -7.73 Total: 11.00 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -2.82 Total: -8.46 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.09 Total: -38.17 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.18 Total: -24.19 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.00 -9.48 -41.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270300961.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.437 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds