Wall clock time and date at job start Tue Mar 31 2020 17:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47238 * 2 1 4 4 N 1.46494 * 109.46915 * 179.97438 * 3 2 1 5 5 C 1.34779 * 119.99244 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00412 * 0.02562 * 5 4 3 7 7 C 1.50711 * 119.99594 * 180.02562 * 5 4 3 8 8 N 1.46496 * 109.46978 * 180.02562 * 7 5 4 9 9 C 1.46499 * 120.00195 * 279.09731 * 8 7 5 10 10 C 1.53001 * 109.47370 * 265.30302 * 9 8 7 11 11 C 1.52993 * 109.47250 * 179.97438 * 10 9 8 12 12 C 1.34785 * 120.00035 * 99.09635 * 8 7 5 13 13 O 1.21580 * 120.00105 * 186.41189 * 12 8 7 14 14 C 1.47642 * 119.99773 * 6.42000 * 12 8 7 15 15 C 1.40016 * 119.89598 * 149.37436 * 14 12 8 16 16 C 1.36317 * 120.10448 * 180.25143 * 15 14 12 17 17 C 1.40888 * 119.89312 * 359.52254 * 16 15 14 18 18 C 1.41105 * 120.10327 * 180.22901 * 17 16 15 19 19 H 1.08003 * 119.99846 * 206.83504 * 18 17 16 20 20 C 1.40226 * 120.00029 * 26.83363 * 18 17 16 21 21 N 1.30649 * 119.99939 * 11.92512 * 20 18 17 22 22 Si 1.86804 * 120.00222 * 191.92193 * 20 18 17 23 23 H 1.48501 * 109.47034 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47120 * 119.99598 * 22 20 18 25 25 H 1.48493 * 109.47166 * 240.00204 * 22 20 18 26 26 C 1.40888 * 119.79092 * 0.49932 * 17 16 15 27 27 C 1.36312 * 119.89533 * 359.73156 * 26 17 16 28 28 H 1.08997 * 109.47008 * 59.99650 * 1 2 3 29 29 H 1.08996 * 109.47328 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47270 * 300.00177 * 1 2 3 31 31 H 1.09001 * 109.47497 * 240.00568 * 2 1 3 32 32 H 1.08998 * 109.47229 * 119.99850 * 2 1 3 33 33 H 1.09001 * 109.46413 * 59.99904 * 3 2 1 34 34 H 1.09001 * 109.46859 * 300.00604 * 3 2 1 35 35 H 0.96993 * 120.00323 * 0.02562 * 4 3 2 36 36 H 1.08995 * 109.46895 * 59.99911 * 7 5 4 37 37 H 1.08997 * 109.46989 * 300.00379 * 7 5 4 38 38 H 1.09003 * 109.46898 * 25.30290 * 9 8 7 39 39 H 1.09004 * 109.47139 * 145.30551 * 9 8 7 40 40 H 1.08998 * 109.46973 * 300.00597 * 10 9 8 41 41 H 1.09004 * 109.46787 * 60.00032 * 10 9 8 42 42 H 1.09001 * 109.47159 * 180.02562 * 11 10 9 43 43 H 1.08994 * 109.47409 * 300.00308 * 11 10 9 44 44 H 1.09004 * 109.46934 * 60.00447 * 11 10 9 45 45 H 1.07994 * 119.94618 * 359.97438 * 15 14 12 46 46 H 1.08002 * 120.05273 * 179.72283 * 16 15 14 47 47 H 0.96998 * 119.99754 * 180.02562 * 21 20 18 48 48 H 1.08004 * 120.05173 * 179.70472 * 26 17 16 49 49 H 1.07999 * 119.95114 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1788 2.6098 0.0002 6 8 3.5724 3.6601 -0.0002 7 6 5.6859 2.6098 0.0003 8 7 6.1742 3.9910 0.0004 9 6 6.2292 4.7486 -1.2523 10 6 7.6297 4.6325 -1.8574 11 6 7.6870 5.4232 -3.1659 12 6 6.5727 4.5648 1.1530 13 8 6.8671 5.7442 1.1750 14 6 6.6520 3.7610 2.3889 15 6 7.6007 4.0788 3.3685 16 6 7.6810 3.3364 4.5089 17 6 6.8009 2.2539 4.7055 18 6 6.8770 1.4855 5.8865 19 1 6.5540 0.4548 5.8818 20 6 7.3718 2.0598 7.0661 21 7 7.5427 3.3529 7.1413 22 14 7.7866 0.9762 8.5301 23 1 7.5060 -0.4421 8.1914 24 1 9.2247 1.1289 8.8673 25 1 6.9593 1.3804 9.6952 26 6 5.8484 1.9377 3.7167 27 6 5.7787 2.6830 2.5775 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9899 0.6025 0.0006 36 1 6.0492 2.0956 -0.8895 37 1 6.0492 2.0962 0.8904 38 1 5.4966 4.3469 -1.9523 39 1 6.0052 5.7966 -1.0532 40 1 8.3624 5.0341 -1.1574 41 1 7.8538 3.5845 -2.0565 42 1 8.6846 5.3402 -3.5972 43 1 6.9544 5.0213 -3.8657 44 1 7.4628 6.4713 -2.9673 45 1 8.2727 4.9107 3.2183 46 1 8.4160 3.5795 5.2619 47 1 7.8854 3.7502 7.9572 48 1 5.1748 1.1059 3.8610 49 1 5.0486 2.4416 1.8191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270300961.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:35 Heat of formation + Delta-G solvation = -64.795132 kcal Electronic energy + Delta-G solvation = -28898.279529 eV Core-core repulsion = 25017.586551 eV Total energy + Delta-G solvation = -3880.692978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.80800 -40.24419 -39.04371 -37.13337 -36.55898 -35.81674 -34.42490 -33.53534 -31.94927 -31.53445 -29.54084 -28.29830 -26.82647 -26.26139 -23.52787 -23.10370 -22.56623 -22.33539 -21.87428 -20.34863 -19.50732 -18.36003 -18.12543 -17.59873 -17.25501 -16.78263 -16.73993 -16.10730 -15.95055 -15.75611 -15.45060 -15.16821 -14.99701 -14.59434 -14.46319 -14.17698 -14.09115 -13.80302 -13.66520 -13.46229 -13.26414 -13.04649 -13.01721 -12.92288 -12.81985 -12.78002 -12.40283 -12.33420 -12.24826 -12.00974 -11.71990 -11.68457 -11.62646 -11.30793 -11.25096 -11.17927 -10.66849 -10.12598 -9.74633 -9.53608 -9.38504 -8.72985 -6.49259 0.43811 1.05114 1.39394 1.42250 1.52129 1.56815 1.82230 2.00587 2.17190 2.39165 2.74002 3.60874 3.69496 3.82907 3.96667 4.02153 4.08636 4.11427 4.16096 4.26010 4.36133 4.38132 4.39022 4.43149 4.56680 4.68459 4.71738 4.78285 4.89555 4.93532 4.95082 5.01074 5.13585 5.15079 5.17932 5.22204 5.25216 5.28082 5.34210 5.34429 5.49214 5.56688 5.60341 5.72831 5.94288 5.99359 6.17037 6.35301 6.55172 6.56641 6.77532 6.87884 7.19867 7.30217 8.20519 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008379 B = 0.003834 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.768531 B = 7301.564071 C =10162.245216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.116 3.884 4 N -0.714 5.714 5 C 0.491 3.509 6 O -0.575 6.575 7 C 0.058 3.942 8 N -0.593 5.593 9 C 0.123 3.877 10 C -0.132 4.132 11 C -0.142 4.142 12 C 0.572 3.428 13 O -0.600 6.600 14 C -0.286 4.286 15 C -0.053 4.053 16 C -0.193 4.193 17 C 0.100 3.900 18 C -0.468 4.468 19 H 0.095 0.905 20 C 0.029 3.971 21 N -0.813 5.813 22 Si 0.992 3.008 23 H -0.248 1.248 24 H -0.266 1.266 25 H -0.268 1.268 26 C -0.233 4.233 27 C -0.066 4.066 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.420 0.580 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.293 0.707 48 H 0.120 0.880 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.782 -11.653 -14.912 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.008 4.008 4 N -0.368 5.368 5 C 0.276 3.724 6 O -0.454 6.454 7 C -0.068 4.068 8 N -0.323 5.323 9 C 0.001 3.999 10 C -0.171 4.171 11 C -0.200 4.200 12 C 0.367 3.633 13 O -0.483 6.483 14 C -0.291 4.291 15 C -0.072 4.072 16 C -0.212 4.212 17 C 0.097 3.903 18 C -0.496 4.496 19 H 0.113 0.887 20 C -0.188 4.188 21 N -0.437 5.437 22 Si 0.812 3.188 23 H -0.171 1.171 24 H -0.190 1.190 25 H -0.193 1.193 26 C -0.252 4.252 27 C -0.084 4.084 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.257 0.743 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.107 0.893 46 H 0.128 0.872 47 H 0.104 0.896 48 H 0.138 0.862 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.016 -10.099 -14.778 18.883 hybrid contribution 0.331 0.175 1.041 1.106 sum -5.685 -9.924 -13.737 17.875 Atomic orbital electron populations 1.21697 0.94357 1.02825 1.02010 1.21695 0.97077 0.93628 1.03972 1.21463 0.79076 0.99067 1.01149 1.45915 1.07754 1.08512 1.74591 1.21503 0.91318 0.84028 0.75519 1.90726 1.70986 1.33194 1.50502 1.22554 0.89816 0.84929 1.09523 1.47332 1.63755 1.13899 1.07322 1.21502 0.98196 0.96236 0.84005 1.21843 0.95665 1.02011 0.97556 1.21651 1.02939 0.99567 0.95810 1.18638 0.74759 0.86037 0.83900 1.90614 1.53336 1.17722 1.86607 1.19145 1.08294 1.04187 0.97446 1.20488 0.96686 0.96817 0.93231 1.21046 1.02543 1.00614 0.97003 1.18144 0.88483 0.90999 0.92660 1.20178 1.36087 0.99570 0.93753 0.88661 1.27051 0.91768 0.96313 1.03675 1.69807 1.31039 1.13098 1.29782 0.84997 0.78746 0.79255 0.75820 1.17064 1.19032 1.19302 1.20947 1.02542 1.05031 0.96723 1.21166 0.96843 0.93243 0.97163 0.92326 0.90881 0.93187 0.89441 0.90560 0.93708 0.92139 0.74251 0.83623 0.83843 0.88955 0.93208 0.94400 0.89915 0.91228 0.90938 0.93530 0.89269 0.87224 0.89598 0.86177 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.13 -1.50 6.05 30.60 0.19 -1.31 16 3 C 0.12 2.22 5.67 86.38 0.49 2.71 16 4 N -0.71 -13.84 5.56 -463.04 -2.57 -16.41 16 5 C 0.49 13.82 5.93 87.66 0.52 14.34 16 6 O -0.58 -22.20 16.27 -3.03 -0.05 -22.25 16 7 C 0.06 1.51 5.35 85.64 0.46 1.97 16 8 N -0.59 -20.91 2.03 -829.78 -1.68 -22.59 16 9 C 0.12 3.74 5.23 86.38 0.45 4.19 16 10 C -0.13 -3.32 6.23 30.59 0.19 -3.13 16 11 C -0.14 -2.75 9.91 71.98 0.71 -2.04 16 12 C 0.57 26.33 7.41 86.73 0.64 26.98 16 13 O -0.60 -31.84 16.33 -3.97 -0.06 -31.90 16 14 C -0.29 -13.63 5.59 -19.93 -0.11 -13.74 16 15 C -0.05 -2.72 9.52 22.25 0.21 -2.51 16 16 C -0.19 -10.22 8.61 22.47 0.19 -10.03 16 17 C 0.10 5.12 5.57 -21.28 -0.12 5.00 16 18 C -0.47 -23.02 9.06 23.46 0.21 -22.81 16 19 H 0.10 4.31 7.88 -2.91 -0.02 4.28 16 20 C 0.03 1.37 5.24 85.35 0.45 1.81 16 21 N -0.81 -41.06 10.76 21.87 0.24 -40.82 16 22 Si 0.99 35.03 29.58 68.60 2.03 37.06 16 23 H -0.25 -8.24 7.11 99.48 0.71 -7.54 16 24 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 25 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 26 C -0.23 -10.44 9.73 22.47 0.22 -10.22 16 27 C -0.07 -2.79 7.39 22.25 0.16 -2.63 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 35 H 0.42 5.02 8.47 -92.71 -0.79 4.24 16 36 H 0.15 2.35 8.13 -2.39 -0.02 2.33 16 37 H 0.14 4.03 4.01 -2.54 -0.01 4.02 16 38 H 0.09 2.35 8.04 -2.39 -0.02 2.33 16 39 H 0.05 1.82 7.48 -2.39 -0.02 1.80 16 40 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.09 4.60 7.92 -2.91 -0.02 4.58 16 46 H 0.11 6.06 6.10 -2.91 -0.02 6.04 16 47 H 0.29 13.33 8.29 -92.71 -0.77 12.56 16 48 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 49 H 0.13 4.76 3.20 -2.91 -0.01 4.75 16 Total: -1.00 -74.05 399.55 3.65 -70.40 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: 0.17 Total: 38.98 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 5.58 Total: -12.46 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -4.02 Total: -79.82 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -0.11 Total: -54.15 kcal Atomic # 14 Polarization: 35.03 SS G_CDS: 2.03 Total: 37.06 kcal Total: -74.05 3.65 -70.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270300961.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.601 kcal (2) G-P(sol) polarization free energy of solvation -74.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds