Wall clock time and date at job start Tue Mar 31 2020 16:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46803 * 2 1 4 4 N 1.46905 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.46906 * 110.99634 * 294.30714 * 4 3 2 6 6 C 1.53243 * 109.33547 * 172.74321 * 5 4 3 7 7 N 1.47080 * 108.52222 * 53.82984 * 6 5 4 8 8 C 1.34776 * 120.88221 * 128.78995 * 7 6 5 9 9 O 1.21281 * 119.99943 * 180.02562 * 8 7 6 10 10 C 1.50700 * 120.00074 * 0.02562 * 8 7 6 11 11 C 1.50694 * 109.47270 * 179.97438 * 10 8 7 12 12 C 1.38325 * 119.96294 * 90.00049 * 11 10 8 13 13 C 1.38285 * 120.13899 * 180.02562 * 12 11 10 14 14 C 1.38125 * 120.06855 * 359.97178 * 13 12 11 15 15 C 1.38859 * 119.92834 * 0.02788 * 14 13 12 16 16 O 1.35750 * 120.06601 * 179.97438 * 15 14 13 17 17 C 1.34834 * 117.00122 * 354.47361 * 16 15 14 18 18 H 1.08000 * 119.99652 * 5.04702 * 17 16 15 19 19 C 1.38658 * 119.99731 * 185.05614 * 17 16 15 20 20 N 1.31559 * 120.00111 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99602 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47434 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47188 * 119.99752 * 21 19 17 24 24 H 1.48501 * 109.47206 * 239.99835 * 21 19 17 25 25 C 1.38075 * 119.96814 * 269.73224 * 11 10 8 26 26 C 1.47076 * 118.23754 * 308.81389 * 7 6 5 27 27 C 1.46897 * 111.00353 * 170.00237 * 4 3 2 28 28 H 1.08998 * 109.47571 * 299.99865 * 1 2 3 29 29 H 1.09000 * 109.47028 * 59.99854 * 1 2 3 30 30 H 1.09005 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46848 * 240.00343 * 2 1 3 32 32 H 1.08996 * 109.47271 * 120.00603 * 2 1 3 33 33 H 1.09000 * 109.47448 * 299.99889 * 3 2 1 34 34 H 1.08997 * 109.47137 * 60.00515 * 3 2 1 35 35 H 1.08996 * 109.49149 * 292.69965 * 5 4 3 36 36 H 1.08996 * 109.49383 * 52.78442 * 5 4 3 37 37 H 1.08994 * 109.62911 * 294.11633 * 6 5 4 38 38 H 1.09000 * 109.62683 * 173.53567 * 6 5 4 39 39 H 1.08996 * 109.47116 * 300.00151 * 10 8 7 40 40 H 1.09006 * 109.47042 * 59.99968 * 10 8 7 41 41 H 1.08000 * 119.93553 * 0.02562 * 12 11 10 42 42 H 1.08001 * 119.96245 * 180.02562 * 13 12 11 43 43 H 1.08000 * 120.03387 * 180.02562 * 14 13 12 44 44 H 0.96997 * 119.99719 * 180.02562 * 20 19 17 45 45 H 1.07995 * 120.03470 * 359.97438 * 25 11 10 46 46 H 1.09002 * 109.63114 * 291.47568 * 26 7 6 47 47 H 1.08996 * 109.63447 * 170.89662 * 26 7 6 48 48 H 1.09001 * 109.49311 * 307.21557 * 27 4 3 49 49 H 1.08999 * 109.49045 * 67.29441 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0359 0.8778 1.2490 6 6 5.5568 0.7281 1.1365 7 7 6.1272 2.0282 0.7523 8 6 7.1458 2.5698 1.4492 9 8 7.6037 3.6431 1.1185 10 6 7.7159 1.8418 2.6391 11 6 8.8359 2.6543 3.2359 12 6 8.5650 3.5824 4.2252 13 6 9.5899 4.3304 4.7750 14 6 10.8880 4.1523 4.3379 15 6 11.1632 3.2214 3.3450 16 8 12.4379 3.0445 2.9130 17 6 13.3729 3.8821 3.4052 18 1 13.1085 4.5967 4.1706 19 6 14.6738 3.8261 2.9285 20 7 14.9958 2.9553 1.9964 21 14 15.9689 4.9870 3.6099 22 1 15.3560 5.8618 4.6415 23 1 17.0687 4.1979 4.2208 24 1 16.5118 5.8236 2.5097 25 6 10.1322 2.4678 2.7986 26 6 5.5562 2.7219 -0.4121 27 6 4.0353 2.7932 -0.2387 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.7963 1.5433 2.0783 36 1 3.5862 -0.0993 1.4246 37 1 5.7963 -0.0157 0.3766 38 1 5.9664 0.4183 2.0979 39 1 6.9343 1.6968 3.3849 40 1 8.0999 0.8721 2.3221 41 1 7.5509 3.7232 4.5690 42 1 9.3752 5.0540 5.5475 43 1 11.6881 4.7365 4.7680 44 1 15.9060 2.9159 1.6632 45 1 10.3438 1.7397 2.0296 46 1 5.7955 2.1697 -1.3209 47 1 5.9652 3.7302 -0.4746 48 1 3.5851 3.2050 -1.1420 49 1 3.7957 3.4320 0.6114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270561194.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:19 Heat of formation + Delta-G solvation = -31.491163 kcal Electronic energy + Delta-G solvation = -27937.452631 eV Core-core repulsion = 24058.203821 eV Total energy + Delta-G solvation = -3879.248809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.36392 -39.03115 -38.28672 -36.43352 -35.48436 -33.23633 -32.37607 -32.05306 -31.23995 -29.18969 -28.42087 -26.89662 -25.24616 -24.77506 -24.08551 -22.03211 -21.55050 -21.22678 -20.61442 -19.01456 -17.56528 -17.26957 -16.90910 -16.09564 -15.73444 -15.64315 -15.44602 -15.16223 -15.00905 -14.72275 -14.38437 -14.31681 -13.75436 -13.67650 -13.52832 -13.30737 -13.12135 -12.82236 -12.56963 -12.32801 -12.27875 -12.19783 -11.90079 -11.78615 -11.62046 -11.47054 -11.45050 -11.26757 -11.21087 -10.86750 -10.79662 -10.69070 -10.55221 -10.37709 -9.65043 -9.26956 -8.97068 -8.77983 -8.55189 -7.99892 -7.15120 -6.38179 -3.97000 2.14894 2.45394 2.77588 2.93686 3.16670 3.18394 3.23679 3.46735 4.02048 4.39302 4.41217 4.56288 4.60843 4.68911 4.84442 4.90802 4.91656 4.94584 5.02417 5.05183 5.13460 5.18356 5.21892 5.24482 5.28804 5.35340 5.42435 5.51511 5.54135 5.61086 5.63126 5.72173 5.73679 5.79289 5.82265 5.85431 5.98962 6.23759 6.37626 6.40766 6.61809 6.64181 6.72481 6.98213 7.13909 7.33150 7.36795 7.43409 7.50697 7.89323 8.07157 8.30767 9.07764 9.79014 10.80277 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.030227 B = 0.001986 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.105987 B =14092.956572 C =14364.073248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.539 5.539 5 C 0.037 3.963 6 C 0.112 3.888 7 N -0.623 5.623 8 C 0.517 3.483 9 O -0.518 6.518 10 C -0.092 4.092 11 C -0.033 4.033 12 C -0.197 4.197 13 C -0.075 4.075 14 C -0.231 4.231 15 C 0.155 3.845 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.174 4.174 26 C 0.117 3.883 27 C 0.043 3.957 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.039 0.961 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.268 0.732 45 H 0.114 0.886 46 H 0.073 0.927 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.804 -6.116 -2.025 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.263 5.263 5 C -0.092 4.092 6 C -0.012 4.012 7 N -0.360 5.360 8 C 0.306 3.694 9 O -0.392 6.392 10 C -0.132 4.132 11 C -0.034 4.034 12 C -0.216 4.216 13 C -0.093 4.093 14 C -0.250 4.250 15 C 0.102 3.898 16 O -0.084 6.084 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.500 5.500 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.193 4.193 26 C -0.006 4.006 27 C -0.086 4.086 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.078 0.922 45 H 0.132 0.868 46 H 0.091 0.909 47 H 0.114 0.886 48 H 0.104 0.896 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -26.048 -6.031 -2.870 26.891 hybrid contribution 0.247 1.106 0.994 1.507 sum -25.801 -4.925 -1.875 26.334 Atomic orbital electron populations 1.21740 0.95594 1.01856 1.01775 1.21553 0.95401 0.96242 1.02769 1.22164 0.86793 0.97432 1.00888 1.61953 1.07523 1.22035 1.34834 1.22565 0.95342 1.00673 0.90576 1.21831 0.92246 0.85370 1.01721 1.48208 1.35411 1.21447 1.30898 1.20778 0.78831 0.85919 0.83922 1.90751 1.58675 1.21517 1.68253 1.20613 0.97729 0.99372 0.95457 1.18667 0.92025 0.96641 0.96021 1.20330 0.97885 1.01360 1.02005 1.20673 0.92591 0.97730 0.98313 1.21173 0.97217 1.04159 1.02479 1.19273 0.86072 0.92638 0.91865 1.83976 1.11752 1.51638 1.61034 1.21367 0.88124 1.15670 1.21458 0.89083 1.25277 0.97333 0.97777 0.96203 1.70053 1.19697 1.33738 1.26476 0.85652 0.79869 0.79249 0.78669 1.19140 1.20211 1.20189 1.19938 0.90640 1.04672 1.04037 1.21622 0.91344 0.99298 0.88332 1.22494 0.95637 0.89115 1.01330 0.92889 0.92663 0.92458 0.91004 0.91906 0.90691 0.94913 0.94305 0.89221 0.90475 0.89061 0.88584 0.88267 0.88080 0.87516 0.85617 0.92180 0.86834 0.90903 0.88587 0.89611 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.12 -0.66 5.86 -26.73 -0.16 -0.82 16 3 C 0.05 0.35 4.96 -3.82 -0.02 0.33 16 4 N -0.54 -4.22 4.63 -234.32 -1.08 -5.31 16 5 C 0.04 0.27 5.46 -3.69 -0.02 0.25 16 6 C 0.11 0.92 6.50 -3.60 -0.02 0.90 16 7 N -0.62 -7.32 3.01 -172.47 -0.52 -7.83 16 8 C 0.52 7.96 7.70 -10.99 -0.08 7.88 16 9 O -0.52 -10.50 15.49 5.56 0.09 -10.42 16 10 C -0.09 -1.28 4.20 -29.04 -0.12 -1.40 16 11 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 12 C -0.20 -3.66 9.70 -39.53 -0.38 -4.04 16 13 C -0.07 -1.48 10.04 -39.61 -0.40 -1.87 16 14 C -0.23 -5.33 9.17 -39.39 -0.36 -5.69 16 15 C 0.15 3.96 6.65 -39.10 -0.26 3.70 16 16 O -0.18 -5.36 9.76 0.04 0.00 -5.36 16 17 C -0.39 -11.29 9.49 30.89 0.29 -10.99 16 18 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -26.02 13.67 55.48 0.76 -25.27 16 21 Si 0.94 21.15 29.55 -169.99 -5.02 16.13 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.17 -3.90 9.64 -39.39 -0.38 -4.28 16 26 C 0.12 1.27 6.60 -3.60 -0.02 1.24 16 27 C 0.04 0.37 5.62 -3.70 -0.02 0.35 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.06 0.33 6.40 -51.93 -0.33 0.00 16 33 H 0.07 0.46 7.97 -51.93 -0.41 0.04 16 34 H 0.03 0.22 8.12 -51.93 -0.42 -0.20 16 35 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.51 6.16 -51.93 -0.32 0.19 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.62 6.02 -51.93 -0.31 0.30 16 39 H 0.10 1.04 7.60 -51.93 -0.39 0.64 16 40 H 0.10 1.19 7.94 -51.93 -0.41 0.77 16 41 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.10 1.21 7.06 -51.93 -0.37 0.84 16 48 H 0.09 0.62 7.99 -51.93 -0.41 0.20 16 49 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -34.98 392.52 -9.76 -44.74 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.74 Total: 2.29 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -2.14 Total: -14.89 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.85 Total: -38.41 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.09 Total: -15.77 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.98 -9.76 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270561194.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.246 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds