Wall clock time and date at job start Tue Mar 31 2020 16:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46803 * 2 1 4 4 N 1.46905 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.46906 * 110.99634 * 294.30714 * 4 3 2 6 6 C 1.53243 * 109.33547 * 172.74321 * 5 4 3 7 7 N 1.47080 * 108.52222 * 53.82984 * 6 5 4 8 8 C 1.34776 * 120.88221 * 128.78995 * 7 6 5 9 9 O 1.21281 * 119.99943 * 180.02562 * 8 7 6 10 10 C 1.50700 * 120.00074 * 0.02562 * 8 7 6 11 11 C 1.50694 * 109.47270 * 179.97438 * 10 8 7 12 12 C 1.38325 * 119.96294 * 90.00049 * 11 10 8 13 13 C 1.38285 * 120.13899 * 180.02562 * 12 11 10 14 14 C 1.38125 * 120.06855 * 359.97178 * 13 12 11 15 15 C 1.38859 * 119.92834 * 0.02788 * 14 13 12 16 16 O 1.35750 * 120.06601 * 179.97438 * 15 14 13 17 17 C 1.34834 * 117.00122 * 354.47361 * 16 15 14 18 18 H 1.08000 * 119.99652 * 5.04702 * 17 16 15 19 19 C 1.38658 * 119.99731 * 185.05614 * 17 16 15 20 20 N 1.31559 * 120.00111 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99602 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47434 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47188 * 119.99752 * 21 19 17 24 24 H 1.48501 * 109.47206 * 239.99835 * 21 19 17 25 25 C 1.38075 * 119.96814 * 269.73224 * 11 10 8 26 26 C 1.47076 * 118.23754 * 308.81389 * 7 6 5 27 27 C 1.46897 * 111.00353 * 170.00237 * 4 3 2 28 28 H 1.08998 * 109.47571 * 299.99865 * 1 2 3 29 29 H 1.09000 * 109.47028 * 59.99854 * 1 2 3 30 30 H 1.09005 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46848 * 240.00343 * 2 1 3 32 32 H 1.08996 * 109.47271 * 120.00603 * 2 1 3 33 33 H 1.09000 * 109.47448 * 299.99889 * 3 2 1 34 34 H 1.08997 * 109.47137 * 60.00515 * 3 2 1 35 35 H 1.08996 * 109.49149 * 292.69965 * 5 4 3 36 36 H 1.08996 * 109.49383 * 52.78442 * 5 4 3 37 37 H 1.08994 * 109.62911 * 294.11633 * 6 5 4 38 38 H 1.09000 * 109.62683 * 173.53567 * 6 5 4 39 39 H 1.08996 * 109.47116 * 300.00151 * 10 8 7 40 40 H 1.09006 * 109.47042 * 59.99968 * 10 8 7 41 41 H 1.08000 * 119.93553 * 0.02562 * 12 11 10 42 42 H 1.08001 * 119.96245 * 180.02562 * 13 12 11 43 43 H 1.08000 * 120.03387 * 180.02562 * 14 13 12 44 44 H 0.96997 * 119.99719 * 180.02562 * 20 19 17 45 45 H 1.07995 * 120.03470 * 359.97438 * 25 11 10 46 46 H 1.09002 * 109.63114 * 291.47568 * 26 7 6 47 47 H 1.08996 * 109.63447 * 170.89662 * 26 7 6 48 48 H 1.09001 * 109.49311 * 307.21557 * 27 4 3 49 49 H 1.08999 * 109.49045 * 67.29441 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0359 0.8778 1.2490 6 6 5.5568 0.7281 1.1365 7 7 6.1272 2.0282 0.7523 8 6 7.1458 2.5698 1.4492 9 8 7.6037 3.6431 1.1185 10 6 7.7159 1.8418 2.6391 11 6 8.8359 2.6543 3.2359 12 6 8.5650 3.5824 4.2252 13 6 9.5899 4.3304 4.7750 14 6 10.8880 4.1523 4.3379 15 6 11.1632 3.2214 3.3450 16 8 12.4379 3.0445 2.9130 17 6 13.3729 3.8821 3.4052 18 1 13.1085 4.5967 4.1706 19 6 14.6738 3.8261 2.9285 20 7 14.9958 2.9553 1.9964 21 14 15.9689 4.9870 3.6099 22 1 15.3560 5.8618 4.6415 23 1 17.0687 4.1979 4.2208 24 1 16.5118 5.8236 2.5097 25 6 10.1322 2.4678 2.7986 26 6 5.5562 2.7219 -0.4121 27 6 4.0353 2.7932 -0.2387 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.7963 1.5433 2.0783 36 1 3.5862 -0.0993 1.4246 37 1 5.7963 -0.0157 0.3766 38 1 5.9664 0.4183 2.0979 39 1 6.9343 1.6968 3.3849 40 1 8.0999 0.8721 2.3221 41 1 7.5509 3.7232 4.5690 42 1 9.3752 5.0540 5.5475 43 1 11.6881 4.7365 4.7680 44 1 15.9060 2.9159 1.6632 45 1 10.3438 1.7397 2.0296 46 1 5.7955 2.1697 -1.3209 47 1 5.9652 3.7302 -0.4746 48 1 3.5851 3.2050 -1.1420 49 1 3.7957 3.4320 0.6114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270561194.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:18 Heat of formation + Delta-G solvation = -54.655955 kcal Electronic energy + Delta-G solvation = -27938.457131 eV Core-core repulsion = 24058.203821 eV Total energy + Delta-G solvation = -3880.253310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43595 -40.63993 -39.33655 -38.15051 -36.32106 -34.36687 -33.98580 -33.33529 -32.10987 -30.89512 -29.39121 -28.09234 -27.23283 -25.47403 -24.80529 -23.34014 -23.02849 -22.09369 -21.66883 -20.07965 -19.39490 -18.74444 -18.28618 -17.00865 -16.85655 -16.68167 -16.38322 -16.23506 -16.10205 -16.04153 -15.72289 -15.50145 -15.36541 -14.96917 -14.69027 -14.39734 -14.21192 -14.00140 -13.88502 -13.58838 -13.41605 -13.00056 -12.87519 -12.82138 -12.73809 -12.52465 -12.50607 -12.33924 -12.24843 -12.23266 -12.08358 -12.04441 -11.77249 -11.34574 -11.20914 -10.91338 -10.79094 -9.82217 -9.64359 -9.27536 -8.98470 -8.47466 -6.15981 0.50910 0.74707 1.33557 1.42591 1.52539 1.61868 1.96738 2.17376 2.81391 2.87478 3.13943 3.43364 3.64268 3.80567 3.91160 3.95454 4.07476 4.09028 4.14993 4.24819 4.29810 4.36060 4.37881 4.42184 4.48285 4.52868 4.57427 4.59481 4.67370 4.72779 4.74943 4.77081 4.85112 4.89974 4.97498 5.04466 5.08399 5.12656 5.25707 5.29598 5.34476 5.44691 5.49213 5.64145 5.71949 5.74306 6.02103 6.02553 6.05336 6.21717 6.39838 6.97129 7.17824 7.78623 8.76376 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.030227 B = 0.001986 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.105987 B =14092.956572 C =14364.073248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.056 3.944 4 N -0.545 5.545 5 C 0.039 3.961 6 C 0.105 3.895 7 N -0.615 5.615 8 C 0.514 3.486 9 O -0.581 6.581 10 C -0.088 4.088 11 C -0.025 4.025 12 C -0.181 4.181 13 C -0.073 4.073 14 C -0.246 4.246 15 C 0.112 3.888 16 O -0.234 6.234 17 C -0.414 4.414 18 H 0.100 0.900 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.021 2.979 22 H -0.252 1.252 23 H -0.265 1.265 24 H -0.269 1.269 25 C -0.192 4.192 26 C 0.114 3.886 27 C 0.053 3.947 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.036 0.964 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.142 0.858 40 H 0.121 0.879 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.118 0.882 44 H 0.272 0.728 45 H 0.106 0.894 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.099 0.901 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.081 -6.447 -0.408 30.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.071 4.071 4 N -0.270 5.270 5 C -0.089 4.089 6 C -0.017 4.017 7 N -0.349 5.349 8 C 0.303 3.697 9 O -0.460 6.460 10 C -0.127 4.127 11 C -0.026 4.026 12 C -0.199 4.199 13 C -0.091 4.091 14 C -0.266 4.266 15 C 0.062 3.938 16 O -0.141 6.141 17 C -0.490 4.490 18 H 0.118 0.882 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.840 3.160 22 H -0.175 1.175 23 H -0.190 1.190 24 H -0.194 1.194 25 C -0.211 4.211 26 C -0.009 4.009 27 C -0.076 4.076 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.131 0.869 39 H 0.160 0.840 40 H 0.139 0.861 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.117 0.883 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -29.429 -6.408 -1.239 30.144 hybrid contribution 0.873 1.126 0.482 1.504 sum -28.556 -5.282 -0.756 29.050 Atomic orbital electron populations 1.21724 0.95017 1.02193 1.01877 1.21509 0.95846 0.95425 1.02683 1.22190 0.85757 0.98166 1.00978 1.61974 1.08470 1.21200 1.35339 1.22599 0.94498 1.01675 0.90118 1.22164 0.92979 0.83489 1.03090 1.48280 1.34110 1.22356 1.30152 1.20994 0.79116 0.85235 0.84311 1.90738 1.60886 1.24277 1.70077 1.20720 0.97122 0.98999 0.95908 1.19183 0.91823 0.96419 0.95179 1.20948 0.99597 0.99158 1.00211 1.21131 0.91164 0.98177 0.98646 1.21294 0.98906 1.03938 1.02425 1.19875 0.85588 0.94758 0.93598 1.83934 1.13521 1.53418 1.63259 1.21872 0.88859 1.16181 1.22101 0.88234 1.26626 0.99515 0.99639 0.96415 1.70199 1.20566 1.36416 1.28837 0.84505 0.76363 0.76843 0.78297 1.17530 1.18989 1.19441 1.20203 0.91888 1.04692 1.04332 1.21664 0.92905 0.98072 0.88296 1.22363 0.93827 0.89729 1.01670 0.92763 0.92615 0.92026 0.91553 0.91457 0.90481 0.94980 0.94600 0.87084 0.89719 0.86879 0.84044 0.86066 0.83690 0.83670 0.86419 0.91859 0.87623 0.90485 0.90986 0.88273 0.95269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 71.98 0.71 -0.32 16 2 C -0.12 -0.96 5.86 30.59 0.18 -0.78 16 3 C 0.06 0.58 4.96 86.30 0.43 1.01 16 4 N -0.54 -7.10 4.63 -895.25 -4.14 -11.24 16 5 C 0.04 0.43 5.46 86.38 0.47 0.90 16 6 C 0.10 1.36 6.50 86.35 0.56 1.92 16 7 N -0.61 -13.22 3.01 -817.95 -2.46 -15.68 16 8 C 0.51 15.00 7.70 87.66 0.68 15.67 16 9 O -0.58 -23.67 15.49 -3.03 -0.05 -23.71 16 10 C -0.09 -2.17 4.20 29.10 0.12 -2.04 16 11 C -0.03 -0.92 4.37 -19.88 -0.09 -1.00 16 12 C -0.18 -6.11 9.70 22.30 0.22 -5.89 16 13 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 14 C -0.25 -11.59 9.17 22.39 0.21 -11.39 16 15 C 0.11 6.00 6.65 22.58 0.15 6.15 16 16 O -0.23 -14.94 9.76 -22.78 -0.22 -15.16 16 17 C -0.41 -25.35 9.49 67.92 0.64 -24.70 16 18 H 0.10 5.63 5.20 -2.91 -0.02 5.62 16 19 C -0.02 -1.47 5.49 84.83 0.47 -1.01 16 20 N -0.92 -58.59 13.67 21.61 0.30 -58.30 16 21 Si 1.02 44.64 29.55 68.60 2.03 46.66 16 22 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 C -0.19 -8.87 9.64 22.39 0.22 -8.66 16 26 C 0.11 2.37 6.60 86.35 0.57 2.94 16 27 C 0.05 0.82 5.62 86.38 0.49 1.31 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.07 0.49 6.40 -2.39 -0.02 0.48 16 33 H 0.08 0.76 7.97 -2.39 -0.02 0.74 16 34 H 0.03 0.34 8.12 -2.39 -0.02 0.32 16 35 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.11 0.79 6.16 -2.39 -0.01 0.78 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 0.98 6.02 -2.39 -0.01 0.97 16 39 H 0.14 2.22 7.60 -2.39 -0.02 2.20 16 40 H 0.12 2.49 7.94 -2.38 -0.02 2.47 16 41 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 42 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.12 5.59 5.64 -2.91 -0.02 5.57 16 44 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 45 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 46 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.07 1.87 7.06 -2.39 -0.02 1.85 16 48 H 0.10 1.26 7.99 -2.39 -0.02 1.24 16 49 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -83.68 392.52 2.63 -81.06 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.94 Total: 24.77 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 6.24 Total: -28.40 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -6.31 Total: -85.22 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.27 Total: -38.88 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -83.68 2.63 -81.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270561194.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.402 kcal (2) G-P(sol) polarization free energy of solvation -83.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds