Wall clock time and date at job start Tue Mar 31 2020 16:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47413 * 2 1 4 4 N 1.46507 * 109.47410 * 179.97438 * 3 2 1 5 5 C 1.47248 * 120.07452 * 89.99646 * 4 3 2 6 6 C 1.53113 * 108.39906 * 110.00178 * 5 4 3 7 7 C 1.51682 * 110.76101 * 85.58457 * 6 5 4 8 8 N 1.45751 * 113.94160 * 293.23005 * 7 6 5 9 9 C 1.46902 * 110.99771 * 192.72299 * 8 7 6 10 10 C 1.50701 * 109.46725 * 170.00110 * 9 8 7 11 11 C 1.38298 * 119.92806 * 269.72006 * 10 9 8 12 12 C 1.38100 * 120.06545 * 179.72607 * 11 10 9 13 13 C 1.38879 * 119.93523 * 0.55503 * 12 11 10 14 14 O 1.35750 * 120.07634 * 179.74671 * 13 12 11 15 15 C 1.34827 * 117.00361 * 174.44218 * 14 13 12 16 16 H 1.08002 * 119.99776 * 5.05667 * 15 14 13 17 17 C 1.38644 * 119.99995 * 185.05608 * 15 14 13 18 18 N 1.31558 * 120.00307 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47108 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46818 * 120.00311 * 19 17 15 22 22 H 1.48498 * 109.46956 * 239.99845 * 19 17 15 23 23 C 1.38887 * 119.85837 * 359.72390 * 13 12 11 24 24 C 1.38097 * 119.92811 * 359.97438 * 23 13 12 25 25 C 1.46881 * 112.43324 * 67.71019 * 8 7 6 26 26 C 1.33607 * 120.07522 * 269.98429 * 4 3 2 27 27 O 1.21279 * 119.88921 * 359.48227 * 26 4 3 28 28 H 1.09007 * 109.46863 * 300.00498 * 1 2 3 29 29 H 1.08998 * 109.47143 * 59.99515 * 1 2 3 30 30 H 1.08997 * 109.47419 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47526 * 239.99787 * 2 1 3 32 32 H 1.09006 * 109.47249 * 120.00152 * 2 1 3 33 33 H 1.09000 * 109.47376 * 60.00266 * 3 2 1 34 34 H 1.08994 * 109.47172 * 299.99887 * 3 2 1 35 35 H 1.08991 * 109.68375 * 350.27098 * 5 4 3 36 36 H 1.09009 * 109.70522 * 229.74087 * 5 4 3 37 37 H 1.09001 * 109.21541 * 325.25690 * 6 5 4 38 38 H 1.08994 * 109.21747 * 205.91898 * 6 5 4 39 39 H 1.09003 * 108.58664 * 172.07004 * 7 6 5 40 40 H 1.09003 * 108.58420 * 54.38252 * 7 6 5 41 41 H 1.09004 * 109.47351 * 289.99936 * 9 8 7 42 42 H 1.08993 * 109.47494 * 49.99980 * 9 8 7 43 43 H 1.07999 * 119.96654 * 0.02562 * 11 10 9 44 44 H 1.08005 * 120.03285 * 180.27684 * 12 11 10 45 45 H 0.97000 * 120.00311 * 179.97438 * 18 17 15 46 46 H 1.07996 * 120.03687 * 180.02562 * 23 13 12 47 47 H 1.08003 * 119.96494 * 180.02562 * 24 23 13 48 48 H 1.08995 * 109.60460 * 33.98504 * 25 8 7 49 49 H 1.08998 * 109.59797 * 154.46728 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2435 1.4422 -1.2733 6 6 4.9158 2.8074 -1.4425 7 6 6.2598 2.8356 -0.7399 8 7 6.1702 2.7438 0.7120 9 6 7.4555 3.0764 1.3408 10 6 7.2662 3.2113 2.8297 11 6 6.9496 4.4416 3.3763 12 6 6.7699 4.5673 4.7398 13 6 6.9188 3.4592 5.5635 14 8 6.7479 3.5806 6.9048 15 6 6.7931 2.4466 7.6328 16 1 7.0400 1.5090 7.1571 17 6 6.5225 2.4843 8.9920 18 7 6.2211 3.6263 9.5714 19 14 6.5843 0.9131 10.0005 20 1 6.9436 -0.2269 9.1194 21 1 7.6045 1.0517 11.0707 22 1 5.2545 0.6657 10.6135 23 6 7.2426 2.2262 5.0121 24 6 7.4148 2.1057 3.6473 25 6 5.6881 1.4313 1.1619 26 6 4.1741 1.4429 1.1571 27 8 3.5667 1.4529 2.2067 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.5525 1.2686 -2.0981 36 1 5.0016 0.6590 -1.2586 37 1 4.2730 3.5788 -1.0185 38 1 5.0616 3.0064 -2.5042 39 1 6.7677 3.7647 -0.9987 40 1 6.8600 2.0019 -1.1045 41 1 8.1758 2.2842 1.1364 42 1 7.8259 4.0177 0.9348 43 1 6.8380 5.3039 2.7357 44 1 6.5182 5.5274 5.1656 45 1 6.0314 3.6526 10.5223 46 1 7.3587 1.3625 5.6500 47 1 7.6661 1.1471 3.2178 48 1 6.0500 0.6572 0.4853 49 1 6.0490 1.2357 2.1716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276404973.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:07 Heat of formation + Delta-G solvation = -28.733175 kcal Electronic energy + Delta-G solvation = -28920.397231 eV Core-core repulsion = 25041.268017 eV Total energy + Delta-G solvation = -3879.129214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.48779 -39.03543 -37.68779 -36.54514 -35.88827 -33.83173 -32.28172 -31.69611 -30.16409 -29.89381 -28.39738 -26.17633 -25.65549 -25.20177 -23.40778 -22.07106 -21.86026 -20.98192 -20.32008 -18.95135 -17.92511 -17.42586 -16.86731 -16.81699 -15.58805 -15.37051 -15.05098 -14.93057 -14.57822 -14.50289 -14.09173 -13.94656 -13.84287 -13.58632 -13.46088 -13.30781 -13.11402 -12.65215 -12.63044 -12.30590 -12.22748 -12.16720 -11.86451 -11.62335 -11.58080 -11.47104 -11.31500 -11.24857 -11.13065 -10.86054 -10.70227 -10.56743 -10.49947 -10.36185 -9.72194 -9.26129 -8.77590 -8.75337 -8.31462 -8.08098 -7.11200 -6.38781 -3.97058 2.26909 2.31238 2.73183 2.94654 3.16697 3.18885 3.24167 3.94402 4.02702 4.46058 4.54312 4.60461 4.70621 4.80786 4.82545 4.91411 5.04405 5.09898 5.14275 5.17143 5.23226 5.27678 5.34245 5.37562 5.43843 5.46248 5.50056 5.56992 5.63660 5.67721 5.77740 5.80721 5.82461 5.93008 5.96167 5.98683 6.04799 6.27685 6.46800 6.48270 6.76853 6.87853 6.96723 7.03590 7.16186 7.32972 7.39658 7.43720 7.51192 7.89938 8.06623 8.33431 9.07162 9.77782 10.79490 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.003059 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.354606 B = 9149.673094 C =10729.073235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.114 3.886 4 N -0.613 5.613 5 C 0.111 3.889 6 C -0.139 4.139 7 C 0.058 3.942 8 N -0.533 5.533 9 C 0.121 3.879 10 C -0.184 4.184 11 C -0.050 4.050 12 C -0.193 4.193 13 C 0.159 3.841 14 O -0.178 6.178 15 C -0.389 4.389 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.230 4.230 24 C -0.066 4.066 25 C 0.035 3.965 26 C 0.528 3.472 27 O -0.529 6.529 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.029 0.971 41 H 0.036 0.964 42 H 0.078 0.922 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.269 0.731 46 H 0.126 0.874 47 H 0.102 0.898 48 H 0.055 0.945 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 -5.377 -25.702 26.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.008 4.008 4 N -0.347 5.347 5 C -0.012 4.012 6 C -0.178 4.178 7 C -0.070 4.070 8 N -0.259 5.259 9 C -0.005 4.005 10 C -0.185 4.185 11 C -0.069 4.069 12 C -0.212 4.212 13 C 0.105 3.895 14 O -0.081 6.081 15 C -0.466 4.466 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.249 4.249 24 C -0.085 4.085 25 C -0.095 4.095 26 C 0.315 3.685 27 O -0.403 6.403 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.097 0.903 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.079 0.921 46 H 0.144 0.856 47 H 0.120 0.880 48 H 0.073 0.927 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.852 -4.753 -24.597 25.346 hybrid contribution 0.565 -1.445 0.113 1.556 sum -3.287 -6.198 -24.483 25.469 Atomic orbital electron populations 1.21687 0.95171 1.01848 1.01967 1.21885 0.96173 0.97365 1.02329 1.21508 0.79377 0.96811 1.03126 1.47962 1.06370 1.74160 1.06256 1.21809 0.96131 0.97416 0.85811 1.21869 0.97322 0.98115 1.00457 1.21633 0.96691 1.01416 0.87291 1.60841 1.30286 1.28060 1.06692 1.20794 0.87614 1.00088 0.92002 1.19013 1.12111 0.94332 0.93092 1.20405 0.96764 0.96178 0.93517 1.20206 1.10521 0.97816 0.92658 1.19386 0.91943 0.93110 0.85093 1.83976 1.77819 1.34105 1.12226 1.21371 1.48840 0.86002 0.90342 0.89051 1.25279 0.96384 0.98777 0.96103 1.70050 1.43402 1.24861 1.11523 0.85656 0.78266 0.80078 0.79483 1.19104 1.20203 1.20128 1.21095 1.10304 0.98377 0.95153 1.20535 0.98240 0.96488 0.93205 1.22586 0.91791 0.90773 1.04377 1.20523 0.90106 0.74925 0.82985 1.90751 1.70014 1.48279 1.31241 0.92302 0.92777 0.92573 0.92225 0.91489 0.89735 0.90922 0.89805 0.91151 0.90175 0.90196 0.90547 0.95248 0.94625 0.90337 0.87174 0.86605 0.92132 0.85639 0.87954 0.92694 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.15 0.37 -0.81 16 2 C -0.14 -1.30 6.26 -26.74 -0.17 -1.46 16 3 C 0.11 1.18 5.36 -4.04 -0.02 1.16 16 4 N -0.61 -6.93 2.48 -173.05 -0.43 -7.36 16 5 C 0.11 0.83 5.93 -3.57 -0.02 0.81 16 6 C -0.14 -1.02 5.86 -27.34 -0.16 -1.18 16 7 C 0.06 0.50 4.93 -5.11 -0.03 0.48 16 8 N -0.53 -6.71 4.37 -238.91 -1.04 -7.75 16 9 C 0.12 1.57 5.12 -4.97 -0.03 1.54 16 10 C -0.18 -3.19 4.96 -104.58 -0.52 -3.71 16 11 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 12 C -0.19 -4.29 9.99 -39.39 -0.39 -4.68 16 13 C 0.16 4.01 6.65 -39.10 -0.26 3.75 16 14 O -0.18 -5.28 9.76 0.06 0.00 -5.28 16 15 C -0.39 -11.27 9.49 30.88 0.29 -10.98 16 16 H 0.09 2.47 5.20 -52.49 -0.27 2.19 16 17 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 18 N -0.86 -26.05 13.67 55.48 0.76 -25.29 16 19 Si 0.94 21.25 29.55 -169.99 -5.02 16.23 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 C -0.23 -5.21 9.17 -39.39 -0.36 -5.57 16 24 C -0.07 -1.24 7.86 -39.61 -0.31 -1.55 16 25 C 0.04 0.48 5.09 -4.64 -0.02 0.45 16 26 C 0.53 8.11 7.20 -11.16 -0.08 8.03 16 27 O -0.53 -10.80 16.63 5.56 0.09 -10.71 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.10 7.39 -51.93 -0.38 0.71 16 34 H 0.07 0.56 8.03 -51.93 -0.42 0.15 16 35 H 0.08 0.44 7.92 -51.93 -0.41 0.02 16 36 H 0.07 0.48 6.76 -51.92 -0.35 0.13 16 37 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.61 7.79 -51.93 -0.40 0.20 16 40 H 0.03 0.22 7.78 -51.93 -0.40 -0.18 16 41 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 42 H 0.08 0.90 7.78 -51.93 -0.40 0.50 16 43 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 47 H 0.10 1.63 7.40 -52.48 -0.39 1.24 16 48 H 0.06 0.59 6.67 -51.93 -0.35 0.25 16 49 H 0.12 1.88 4.52 -51.93 -0.23 1.65 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -34.82 389.03 -9.64 -44.46 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.67 Total: 3.86 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -2.19 Total: -14.04 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: -0.71 Total: -40.40 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.09 Total: -15.98 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.82 -9.64 -44.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276404973.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.730 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds