Wall clock time and date at job start Tue Mar 31 2020 16:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47413 * 2 1 4 4 N 1.46507 * 109.47410 * 179.97438 * 3 2 1 5 5 C 1.47248 * 120.07452 * 89.99646 * 4 3 2 6 6 C 1.53113 * 108.39906 * 110.00178 * 5 4 3 7 7 C 1.51682 * 110.76101 * 85.58457 * 6 5 4 8 8 N 1.45751 * 113.94160 * 293.23005 * 7 6 5 9 9 C 1.46902 * 110.99771 * 192.72299 * 8 7 6 10 10 C 1.50701 * 109.46725 * 170.00110 * 9 8 7 11 11 C 1.38298 * 119.92806 * 269.72006 * 10 9 8 12 12 C 1.38100 * 120.06545 * 179.72607 * 11 10 9 13 13 C 1.38879 * 119.93523 * 0.55503 * 12 11 10 14 14 O 1.35750 * 120.07634 * 179.74671 * 13 12 11 15 15 C 1.34827 * 117.00361 * 174.44218 * 14 13 12 16 16 H 1.08002 * 119.99776 * 5.05667 * 15 14 13 17 17 C 1.38644 * 119.99995 * 185.05608 * 15 14 13 18 18 N 1.31558 * 120.00307 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47108 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46818 * 120.00311 * 19 17 15 22 22 H 1.48498 * 109.46956 * 239.99845 * 19 17 15 23 23 C 1.38887 * 119.85837 * 359.72390 * 13 12 11 24 24 C 1.38097 * 119.92811 * 359.97438 * 23 13 12 25 25 C 1.46881 * 112.43324 * 67.71019 * 8 7 6 26 26 C 1.33607 * 120.07522 * 269.98429 * 4 3 2 27 27 O 1.21279 * 119.88921 * 359.48227 * 26 4 3 28 28 H 1.09007 * 109.46863 * 300.00498 * 1 2 3 29 29 H 1.08998 * 109.47143 * 59.99515 * 1 2 3 30 30 H 1.08997 * 109.47419 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47526 * 239.99787 * 2 1 3 32 32 H 1.09006 * 109.47249 * 120.00152 * 2 1 3 33 33 H 1.09000 * 109.47376 * 60.00266 * 3 2 1 34 34 H 1.08994 * 109.47172 * 299.99887 * 3 2 1 35 35 H 1.08991 * 109.68375 * 350.27098 * 5 4 3 36 36 H 1.09009 * 109.70522 * 229.74087 * 5 4 3 37 37 H 1.09001 * 109.21541 * 325.25690 * 6 5 4 38 38 H 1.08994 * 109.21747 * 205.91898 * 6 5 4 39 39 H 1.09003 * 108.58664 * 172.07004 * 7 6 5 40 40 H 1.09003 * 108.58420 * 54.38252 * 7 6 5 41 41 H 1.09004 * 109.47351 * 289.99936 * 9 8 7 42 42 H 1.08993 * 109.47494 * 49.99980 * 9 8 7 43 43 H 1.07999 * 119.96654 * 0.02562 * 11 10 9 44 44 H 1.08005 * 120.03285 * 180.27684 * 12 11 10 45 45 H 0.97000 * 120.00311 * 179.97438 * 18 17 15 46 46 H 1.07996 * 120.03687 * 180.02562 * 23 13 12 47 47 H 1.08003 * 119.96494 * 180.02562 * 24 23 13 48 48 H 1.08995 * 109.60460 * 33.98504 * 25 8 7 49 49 H 1.08998 * 109.59797 * 154.46728 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2435 1.4422 -1.2733 6 6 4.9158 2.8074 -1.4425 7 6 6.2598 2.8356 -0.7399 8 7 6.1702 2.7438 0.7120 9 6 7.4555 3.0764 1.3408 10 6 7.2662 3.2113 2.8297 11 6 6.9496 4.4416 3.3763 12 6 6.7699 4.5673 4.7398 13 6 6.9188 3.4592 5.5635 14 8 6.7479 3.5806 6.9048 15 6 6.7931 2.4466 7.6328 16 1 7.0400 1.5090 7.1571 17 6 6.5225 2.4843 8.9920 18 7 6.2211 3.6263 9.5714 19 14 6.5843 0.9131 10.0005 20 1 6.9436 -0.2269 9.1194 21 1 7.6045 1.0517 11.0707 22 1 5.2545 0.6657 10.6135 23 6 7.2426 2.2262 5.0121 24 6 7.4148 2.1057 3.6473 25 6 5.6881 1.4313 1.1619 26 6 4.1741 1.4429 1.1571 27 8 3.5667 1.4529 2.2067 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.5525 1.2686 -2.0981 36 1 5.0016 0.6590 -1.2586 37 1 4.2730 3.5788 -1.0185 38 1 5.0616 3.0064 -2.5042 39 1 6.7677 3.7647 -0.9987 40 1 6.8600 2.0019 -1.1045 41 1 8.1758 2.2842 1.1364 42 1 7.8259 4.0177 0.9348 43 1 6.8380 5.3039 2.7357 44 1 6.5182 5.5274 5.1656 45 1 6.0314 3.6526 10.5223 46 1 7.3587 1.3625 5.6500 47 1 7.6661 1.1471 3.2178 48 1 6.0500 0.6572 0.4853 49 1 6.0490 1.2357 2.1716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276404973.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:06 Heat of formation + Delta-G solvation = -52.449892 kcal Electronic energy + Delta-G solvation = -28921.425665 eV Core-core repulsion = 25041.268017 eV Total energy + Delta-G solvation = -3880.157648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.51312 -40.74525 -39.02940 -37.86070 -37.05360 -34.72160 -34.24506 -32.65017 -31.81948 -31.25855 -29.39515 -27.68739 -26.77452 -26.45639 -24.56700 -23.65160 -22.73492 -22.00828 -21.63954 -19.95889 -19.80820 -18.82906 -18.33893 -17.74487 -16.71445 -16.46185 -16.38561 -16.23911 -15.93657 -15.78150 -15.48727 -15.26209 -15.20502 -14.91296 -14.44891 -14.40701 -14.30779 -14.10570 -13.89556 -13.62337 -13.30502 -13.12179 -13.01916 -12.94409 -12.77736 -12.60522 -12.44320 -12.31114 -12.23598 -12.12852 -11.97828 -11.88818 -11.69010 -11.61641 -11.19067 -10.88435 -10.81094 -9.75177 -9.66949 -9.23689 -8.89692 -8.48827 -6.16898 0.59954 0.66711 1.31560 1.40637 1.50647 1.59919 2.08483 2.16033 2.74298 3.02433 3.29685 3.53074 3.61466 3.87166 3.96012 3.97586 4.03161 4.04341 4.12609 4.15887 4.21523 4.32971 4.41478 4.48797 4.54399 4.58532 4.60802 4.64009 4.71134 4.74761 4.80684 4.82321 4.89734 4.97047 5.06539 5.08650 5.12364 5.13480 5.21225 5.30069 5.33295 5.40171 5.56443 5.65243 5.70904 5.76364 5.98534 6.02036 6.19202 6.27884 6.45895 6.95824 7.25761 7.77458 8.75049 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.003059 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.354606 B = 9149.673094 C =10729.073235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.111 3.889 4 N -0.604 5.604 5 C 0.103 3.897 6 C -0.133 4.133 7 C 0.052 3.948 8 N -0.550 5.550 9 C 0.124 3.876 10 C -0.157 4.157 11 C -0.048 4.048 12 C -0.209 4.209 13 C 0.113 3.887 14 O -0.234 6.234 15 C -0.413 4.413 16 H 0.099 0.901 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.019 2.981 20 H -0.253 1.253 21 H -0.263 1.263 22 H -0.269 1.269 23 C -0.244 4.244 24 C -0.063 4.063 25 C 0.039 3.961 26 C 0.517 3.483 27 O -0.600 6.600 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.147 0.853 44 H 0.110 0.890 45 H 0.273 0.727 46 H 0.114 0.886 47 H 0.138 0.862 48 H 0.090 0.910 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.195 -6.951 -31.336 32.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C -0.011 4.011 4 N -0.336 5.336 5 C -0.018 4.018 6 C -0.172 4.172 7 C -0.074 4.074 8 N -0.277 5.277 9 C -0.002 4.002 10 C -0.158 4.158 11 C -0.066 4.066 12 C -0.228 4.228 13 C 0.063 3.937 14 O -0.141 6.141 15 C -0.489 4.489 16 H 0.116 0.884 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.176 1.176 21 H -0.188 1.188 22 H -0.194 1.194 23 C -0.263 4.263 24 C -0.081 4.081 25 C -0.091 4.091 26 C 0.305 3.695 27 O -0.480 6.480 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.134 0.866 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.123 0.877 43 H 0.164 0.836 44 H 0.128 0.872 45 H 0.082 0.918 46 H 0.132 0.868 47 H 0.156 0.844 48 H 0.108 0.892 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.924 -6.325 -30.368 31.157 hybrid contribution 0.271 -0.893 1.385 1.670 sum -2.653 -7.219 -28.983 29.986 Atomic orbital electron populations 1.21678 0.94093 1.02434 1.02231 1.21809 0.97104 0.96388 1.01684 1.21606 0.79140 0.97492 1.02902 1.48100 1.06886 1.71826 1.06777 1.22213 0.97011 0.98187 0.84379 1.21867 0.96061 0.96996 1.02264 1.21812 0.98027 1.03171 0.84416 1.60695 1.29951 1.27581 1.09492 1.20842 0.88573 1.02578 0.88180 1.19679 1.07076 0.92837 0.96198 1.20856 0.95321 0.98309 0.92119 1.20484 1.11094 0.96964 0.94299 1.19949 0.94111 0.95278 0.84377 1.83932 1.81030 1.34815 1.14325 1.21844 1.49438 0.86471 0.91174 0.88408 1.26610 0.95651 1.02885 0.97005 1.70194 1.46036 1.27689 1.12089 0.84534 0.78714 0.75320 0.77633 1.17616 1.18794 1.19416 1.21211 1.10939 0.97082 0.97072 1.20940 0.96888 0.98768 0.91546 1.22449 0.90455 0.92545 1.03677 1.21011 0.91138 0.74253 0.83122 1.90724 1.71417 1.51910 1.33955 0.93957 0.90590 0.91847 0.89861 0.94943 0.93539 0.87448 0.86670 0.89677 0.92573 0.86555 0.89113 0.92846 0.92067 0.87706 0.83580 0.87234 0.91823 0.86794 0.84444 0.89202 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.41 16 2 C -0.13 -2.29 6.26 30.59 0.19 -2.10 16 3 C 0.11 2.16 5.36 86.38 0.46 2.62 16 4 N -0.60 -12.33 2.48 -820.45 -2.03 -14.36 16 5 C 0.10 1.01 5.93 86.27 0.51 1.52 16 6 C -0.13 -1.24 5.86 30.20 0.18 -1.07 16 7 C 0.05 0.61 4.93 86.09 0.42 1.03 16 8 N -0.55 -11.55 4.37 -909.78 -3.98 -15.53 16 9 C 0.12 2.61 5.12 85.56 0.44 3.05 16 10 C -0.16 -5.07 4.96 -19.83 -0.10 -5.17 16 11 C -0.05 -1.73 9.69 22.25 0.22 -1.52 16 12 C -0.21 -9.76 9.99 22.39 0.22 -9.54 16 13 C 0.11 6.13 6.65 22.58 0.15 6.28 16 14 O -0.23 -15.12 9.76 -22.71 -0.22 -15.34 16 15 C -0.41 -25.72 9.49 67.92 0.64 -25.07 16 16 H 0.10 5.66 5.20 -2.91 -0.02 5.65 16 17 C -0.02 -1.47 5.49 84.83 0.47 -1.00 16 18 N -0.92 -59.38 13.67 21.61 0.30 -59.08 16 19 Si 1.02 45.53 29.55 68.60 2.03 47.56 16 20 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 C -0.24 -11.57 9.17 22.39 0.21 -11.36 16 24 C -0.06 -2.31 7.86 22.25 0.17 -2.14 16 25 C 0.04 0.96 5.09 85.78 0.44 1.40 16 26 C 0.52 15.56 7.20 88.06 0.63 16.20 16 27 O -0.60 -25.82 16.63 -3.03 -0.05 -25.87 16 28 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.05 1.27 7.39 -2.39 -0.02 1.25 16 34 H 0.11 1.32 8.03 -2.39 -0.02 1.30 16 35 H 0.12 0.47 7.92 -2.39 -0.02 0.45 16 36 H 0.09 0.65 6.76 -2.38 -0.02 0.64 16 37 H 0.06 0.84 8.05 -2.39 -0.02 0.82 16 38 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.09 0.86 7.79 -2.39 -0.02 0.84 16 40 H 0.05 0.43 7.78 -2.39 -0.02 0.41 16 41 H 0.06 1.05 8.08 -2.38 -0.02 1.03 16 42 H 0.10 1.76 7.78 -2.39 -0.02 1.74 16 43 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 44 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 45 H 0.27 16.00 8.31 -92.71 -0.77 15.22 16 46 H 0.11 5.54 5.64 -2.91 -0.02 5.52 16 47 H 0.14 4.04 7.40 -2.91 -0.02 4.02 16 48 H 0.09 1.52 6.67 -2.39 -0.02 1.50 16 49 H 0.09 2.67 4.52 -2.39 -0.01 2.66 16 Total: -1.00 -88.16 389.03 2.95 -85.21 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.94 Total: 25.69 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 5.97 Total: -28.28 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -5.71 Total: -88.97 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.27 Total: -41.21 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -88.16 2.95 -85.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276404973.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.758 kcal (2) G-P(sol) polarization free energy of solvation -88.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds