Wall clock time and date at job start Tue Mar 31 2020 16:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47611 * 306.13712 * 3 2 1 5 5 C 1.37103 * 120.00262 * 263.71410 * 4 3 2 6 6 H 1.08004 * 120.00009 * 203.43070 * 5 4 3 7 7 C 1.38946 * 119.99948 * 23.43109 * 5 4 3 8 8 N 1.31417 * 119.99773 * 6.30020 * 7 5 4 9 9 Si 1.86798 * 120.00168 * 186.29435 * 7 5 4 10 10 H 1.48505 * 109.46836 * 60.00023 * 9 7 5 11 11 H 1.48500 * 109.47340 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47439 * 300.00613 * 9 7 5 13 13 C 1.34787 * 119.99860 * 83.70734 * 4 3 2 14 14 O 1.21287 * 119.99869 * 3.93973 * 13 4 3 15 15 C 1.50703 * 119.99761 * 183.93348 * 13 4 3 16 16 H 1.09002 * 109.47339 * 47.39482 * 15 13 4 17 17 C 1.52996 * 109.47266 * 287.39459 * 15 13 4 18 18 C 1.53006 * 109.46850 * 300.00130 * 17 15 13 19 19 C 1.53000 * 109.47023 * 300.00011 * 18 17 15 20 20 C 1.52996 * 109.47317 * 60.00274 * 19 18 17 21 21 C 1.53000 * 109.46984 * 167.39217 * 15 13 4 22 22 H 1.08997 * 109.47179 * 180.02562 * 21 15 13 23 23 C 1.50706 * 109.47164 * 300.00468 * 21 15 13 24 24 O 1.21280 * 119.99897 * 10.28546 * 23 21 15 25 25 N 1.34775 * 119.99728 * 190.28988 * 23 21 15 26 26 C 1.47023 * 125.64628 * 186.55430 * 25 23 21 27 27 C 1.54312 * 107.27775 * 180.96935 * 26 25 23 28 28 C 1.55154 * 102.86011 * 22.52903 * 27 26 25 29 29 C 1.47424 * 125.65200 * 6.87083 * 25 23 21 30 30 H 4.40643 * 5.51393 * 179.97438 * 4 1 2 31 31 H 1.08996 * 109.47476 * 66.14124 * 3 2 1 32 32 H 1.09004 * 109.46939 * 186.13978 * 3 2 1 33 33 H 0.96999 * 119.99680 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47359 * 59.99786 * 17 15 13 35 35 H 1.08997 * 109.47059 * 180.02562 * 17 15 13 36 36 H 1.09002 * 109.46915 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.47305 * 60.00132 * 18 17 15 38 38 H 1.08997 * 109.47179 * 300.00198 * 19 18 17 39 39 H 1.09002 * 109.46866 * 180.02562 * 19 18 17 40 40 H 1.08993 * 109.47646 * 179.97438 * 20 19 18 41 41 H 1.09005 * 109.47056 * 59.99510 * 20 19 18 42 42 H 1.09001 * 109.88229 * 300.52208 * 26 25 23 43 43 H 1.09007 * 109.87612 * 61.68201 * 26 25 23 44 44 H 1.09006 * 110.92455 * 264.11999 * 27 26 25 45 45 H 1.08992 * 110.74526 * 140.85996 * 27 26 25 46 46 H 1.09004 * 111.00728 * 206.22874 * 28 27 26 47 47 H 1.09001 * 111.04125 * 82.39479 * 28 27 26 48 48 H 1.09003 * 110.36301 * 274.67616 * 29 25 23 49 49 H 1.09000 * 110.36674 * 36.88278 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8136 1.1154 5 6 3.4856 -0.2159 2.2984 6 1 4.1762 -0.7074 2.9677 7 6 2.9528 1.0221 2.6361 8 7 2.0205 1.5633 1.8845 9 14 3.5615 1.9171 4.1585 10 1 5.0182 2.1761 4.0311 11 1 2.8390 3.2071 4.2965 12 1 3.3110 1.0792 5.3587 13 6 3.2394 -2.1504 0.9787 14 8 2.9974 -2.6716 -0.0894 15 6 3.6573 -2.9975 2.1531 16 1 3.0823 -2.7081 3.0327 17 6 5.1481 -2.7893 2.4272 18 6 5.9552 -3.1955 1.1924 19 6 5.6958 -4.6697 0.8759 20 6 4.2050 -4.8779 0.6017 21 6 3.3979 -4.4717 1.8365 22 1 3.6997 -5.0843 2.6860 23 6 1.9295 -4.6767 1.5664 24 8 1.1972 -3.7186 1.4369 25 7 1.4301 -5.9247 1.4689 26 6 0.0557 -6.2693 1.0767 27 6 -0.0639 -7.8069 1.1290 28 6 1.0773 -8.2092 2.1001 29 6 2.1695 -7.1700 1.7441 30 1 -1.0499 0.0000 0.0003 31 1 3.0095 -0.4148 -0.9398 32 1 3.0088 1.0226 0.1099 33 1 1.6488 2.4277 2.1200 34 1 5.3329 -1.7390 2.6527 35 1 5.4504 -3.4023 3.2763 36 1 7.0173 -3.0476 1.3879 37 1 5.6530 -2.5828 0.3431 38 1 5.9980 -5.2824 1.7252 39 1 6.2712 -4.9592 -0.0035 40 1 4.0202 -5.9280 0.3757 41 1 3.9028 -4.2651 -0.2476 42 1 -0.6525 -5.8166 1.7708 43 1 -0.1396 -5.9185 0.0633 44 1 0.0966 -8.2436 0.1432 45 1 -1.0332 -8.1054 1.5283 46 1 1.4225 -9.2233 1.8986 47 1 0.7625 -8.1051 3.1384 48 1 2.7210 -7.4872 0.8590 49 1 2.8499 -7.0295 2.5840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281143689.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:45 Heat of formation + Delta-G solvation = -1.408033 kcal Electronic energy + Delta-G solvation = -31032.382100 eV Core-core repulsion = 27154.437793 eV Total energy + Delta-G solvation = -3877.944307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.44117 -38.88311 -36.99661 -36.35313 -34.71410 -31.92253 -31.69145 -31.35267 -30.41311 -30.05437 -28.84174 -26.33416 -24.78224 -24.11038 -22.32888 -22.27957 -21.09783 -20.21700 -19.12917 -18.59898 -17.39938 -16.72566 -16.44130 -16.17360 -15.80024 -15.23487 -14.61985 -14.29661 -14.13715 -13.96075 -13.65868 -13.43514 -13.33127 -13.22445 -13.14030 -12.93505 -12.28307 -12.14227 -12.04258 -11.80826 -11.67200 -11.65605 -11.38987 -11.31910 -11.25777 -11.12706 -10.96951 -10.83403 -10.70181 -10.41359 -10.33707 -10.13861 -9.96875 -9.54098 -9.23149 -9.02072 -8.97122 -8.44357 -8.30413 -7.94095 -7.64731 -6.18405 -3.85250 3.17622 3.23436 3.24335 3.25627 3.33482 3.94251 4.17064 4.31726 4.46317 4.51658 4.55230 4.78290 4.99884 5.07581 5.11214 5.20654 5.23669 5.30079 5.39166 5.47983 5.58719 5.59836 5.61699 5.69924 5.72921 5.85305 5.87824 5.92462 5.95496 5.97467 6.02267 6.05923 6.09289 6.22891 6.40769 6.52441 6.53816 6.65324 6.71497 6.76214 6.80458 6.86560 7.10701 7.17845 7.43309 7.52869 7.88809 7.94514 8.49776 8.79529 9.20020 9.26070 9.66469 10.09157 10.79784 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.004561 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.679044 B = 6137.490172 C = 6935.721805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.086 4.086 3 C 0.246 3.754 4 N -0.444 5.444 5 C -0.338 4.338 6 H 0.103 0.897 7 C 0.035 3.965 8 N -0.863 5.863 9 Si 0.918 3.082 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.500 3.500 14 O -0.591 6.591 15 C -0.074 4.074 16 H 0.089 0.911 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.109 4.109 20 C -0.130 4.130 21 C -0.074 4.074 22 H 0.080 0.920 23 C 0.534 3.466 24 O -0.500 6.500 25 N -0.630 5.630 26 C 0.109 3.891 27 C -0.131 4.131 28 C -0.134 4.134 29 C 0.103 3.897 30 H 0.192 0.808 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.268 0.732 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.118 0.882 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.605 -15.981 1.312 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.088 4.088 3 C 0.123 3.877 4 N -0.162 5.162 5 C -0.466 4.466 6 H 0.120 0.880 7 C -0.170 4.170 8 N -0.501 5.501 9 Si 0.745 3.255 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.289 3.711 14 O -0.477 6.477 15 C -0.096 4.096 16 H 0.108 0.892 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.147 4.147 20 C -0.167 4.167 21 C -0.095 4.095 22 H 0.098 0.902 23 C 0.323 3.677 24 O -0.372 6.372 25 N -0.368 5.368 26 C -0.014 4.014 27 C -0.169 4.169 28 C -0.172 4.172 29 C -0.021 4.021 30 H 0.209 0.791 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.021 -15.351 0.722 15.662 hybrid contribution -0.238 0.516 1.135 1.270 sum 2.783 -14.835 1.857 15.207 Atomic orbital electron populations 1.24059 0.95253 1.05805 1.05305 1.23147 0.94350 0.95565 0.95706 1.18033 0.84075 0.97090 0.88464 1.43481 1.56685 1.03884 1.12166 1.19738 1.25939 1.03201 0.97690 0.88007 1.25364 0.95072 0.98136 0.98417 1.69999 1.24525 1.17703 1.37830 0.86143 0.78686 0.78864 0.81808 1.19914 1.20992 1.20007 1.19628 0.80481 0.82223 0.88730 1.90329 1.56144 1.71738 1.29449 1.20839 0.97114 0.92098 0.99564 0.89246 1.21656 0.93095 1.03145 0.97390 1.21533 0.98884 0.96305 0.98951 1.21456 0.96160 0.96715 1.00352 1.21965 0.93904 1.01061 0.99752 1.21029 0.91329 0.97604 0.99566 0.90235 1.20393 0.90384 0.80696 0.76267 1.90804 1.60264 1.38949 1.47199 1.48502 1.12146 1.05532 1.70629 1.21796 0.84618 0.94448 1.00556 1.22625 0.99312 0.94829 1.00135 1.22781 0.95727 0.98688 0.99998 1.22263 0.94898 0.84397 1.00524 0.79052 0.92517 0.87388 0.92143 0.89359 0.92359 0.92558 0.91365 0.92968 0.92452 0.93268 0.86391 0.91865 0.91832 0.90726 0.90331 0.90099 0.90708 0.91621 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.32 19.25 29.55 0.57 -6.75 16 2 C -0.09 -2.34 11.48 -37.12 -0.43 -2.76 16 3 C 0.25 6.39 5.09 -6.83 -0.03 6.36 16 4 N -0.44 -11.52 2.60 -117.93 -0.31 -11.83 16 5 C -0.34 -8.61 8.51 -14.93 -0.13 -8.74 16 6 H 0.10 2.39 4.59 -52.48 -0.24 2.15 16 7 C 0.03 0.89 5.18 -17.47 -0.09 0.80 16 8 N -0.86 -23.35 8.94 55.50 0.50 -22.85 16 9 Si 0.92 19.83 29.56 -169.99 -5.02 14.81 16 10 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 13 C 0.50 12.20 4.03 -10.98 -0.04 12.16 16 14 O -0.59 -15.38 11.60 -14.92 -0.17 -15.55 16 15 C -0.07 -1.51 1.46 -91.77 -0.13 -1.65 16 16 H 0.09 1.98 7.72 -51.93 -0.40 1.58 16 17 C -0.12 -1.95 5.15 -26.73 -0.14 -2.09 16 18 C -0.12 -1.87 5.70 -26.73 -0.15 -2.02 16 19 C -0.11 -1.52 5.92 -26.73 -0.16 -1.68 16 20 C -0.13 -2.11 4.85 -26.73 -0.13 -2.24 16 21 C -0.07 -1.29 1.67 -91.77 -0.15 -1.44 16 22 H 0.08 1.16 7.28 -51.93 -0.38 0.78 16 23 C 0.53 10.62 6.47 -10.98 -0.07 10.55 16 24 O -0.50 -12.71 14.35 -14.91 -0.21 -12.92 16 25 N -0.63 -9.80 3.33 -170.52 -0.57 -10.37 16 26 C 0.11 1.51 6.87 -3.07 -0.02 1.49 16 27 C -0.13 -1.21 6.95 -24.90 -0.17 -1.38 16 28 C -0.13 -1.12 7.08 -24.59 -0.17 -1.29 16 29 C 0.10 1.11 5.86 -2.53 -0.01 1.10 16 30 H 0.19 4.16 7.80 -54.10 -0.42 3.74 16 31 H 0.06 1.42 7.56 -51.93 -0.39 1.03 16 32 H 0.11 2.83 6.37 -51.93 -0.33 2.49 16 33 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.09 1.61 5.44 -51.93 -0.28 1.33 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.26 7.21 -51.93 -0.37 0.89 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.69 6.44 -51.93 -0.33 0.36 16 41 H 0.12 2.41 5.09 -51.93 -0.26 2.15 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.67 7.29 -51.93 -0.38 0.29 16 49 H 0.07 0.73 7.23 -51.93 -0.38 0.35 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -33.38 372.97 -9.18 -42.56 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -7.54 Total: 10.11 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.47 Total: 0.42 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.38 Total: -45.05 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.39 Total: -28.48 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.38 -9.18 -42.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281143689.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.156 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds