Wall clock time and date at job start Tue Mar 31 2020 16:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47611 * 306.13712 * 3 2 1 5 5 C 1.37103 * 120.00262 * 263.71410 * 4 3 2 6 6 H 1.08004 * 120.00009 * 203.43070 * 5 4 3 7 7 C 1.38946 * 119.99948 * 23.43109 * 5 4 3 8 8 N 1.31417 * 119.99773 * 6.30020 * 7 5 4 9 9 Si 1.86798 * 120.00168 * 186.29435 * 7 5 4 10 10 H 1.48505 * 109.46836 * 60.00023 * 9 7 5 11 11 H 1.48500 * 109.47340 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47439 * 300.00613 * 9 7 5 13 13 C 1.34787 * 119.99860 * 83.70734 * 4 3 2 14 14 O 1.21287 * 119.99869 * 3.93973 * 13 4 3 15 15 C 1.50703 * 119.99761 * 183.93348 * 13 4 3 16 16 H 1.09002 * 109.47339 * 47.39482 * 15 13 4 17 17 C 1.52996 * 109.47266 * 287.39459 * 15 13 4 18 18 C 1.53006 * 109.46850 * 300.00130 * 17 15 13 19 19 C 1.53000 * 109.47023 * 300.00011 * 18 17 15 20 20 C 1.52996 * 109.47317 * 60.00274 * 19 18 17 21 21 C 1.53000 * 109.46984 * 167.39217 * 15 13 4 22 22 H 1.08997 * 109.47179 * 180.02562 * 21 15 13 23 23 C 1.50706 * 109.47164 * 300.00468 * 21 15 13 24 24 O 1.21280 * 119.99897 * 10.28546 * 23 21 15 25 25 N 1.34775 * 119.99728 * 190.28988 * 23 21 15 26 26 C 1.47023 * 125.64628 * 186.55430 * 25 23 21 27 27 C 1.54312 * 107.27775 * 180.96935 * 26 25 23 28 28 C 1.55154 * 102.86011 * 22.52903 * 27 26 25 29 29 C 1.47424 * 125.65200 * 6.87083 * 25 23 21 30 30 H 4.40643 * 5.51393 * 179.97438 * 4 1 2 31 31 H 1.08996 * 109.47476 * 66.14124 * 3 2 1 32 32 H 1.09004 * 109.46939 * 186.13978 * 3 2 1 33 33 H 0.96999 * 119.99680 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47359 * 59.99786 * 17 15 13 35 35 H 1.08997 * 109.47059 * 180.02562 * 17 15 13 36 36 H 1.09002 * 109.46915 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.47305 * 60.00132 * 18 17 15 38 38 H 1.08997 * 109.47179 * 300.00198 * 19 18 17 39 39 H 1.09002 * 109.46866 * 180.02562 * 19 18 17 40 40 H 1.08993 * 109.47646 * 179.97438 * 20 19 18 41 41 H 1.09005 * 109.47056 * 59.99510 * 20 19 18 42 42 H 1.09001 * 109.88229 * 300.52208 * 26 25 23 43 43 H 1.09007 * 109.87612 * 61.68201 * 26 25 23 44 44 H 1.09006 * 110.92455 * 264.11999 * 27 26 25 45 45 H 1.08992 * 110.74526 * 140.85996 * 27 26 25 46 46 H 1.09004 * 111.00728 * 206.22874 * 28 27 26 47 47 H 1.09001 * 111.04125 * 82.39479 * 28 27 26 48 48 H 1.09003 * 110.36301 * 274.67616 * 29 25 23 49 49 H 1.09000 * 110.36674 * 36.88278 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8136 1.1154 5 6 3.4856 -0.2159 2.2984 6 1 4.1762 -0.7074 2.9677 7 6 2.9528 1.0221 2.6361 8 7 2.0205 1.5633 1.8845 9 14 3.5615 1.9171 4.1585 10 1 5.0182 2.1761 4.0311 11 1 2.8390 3.2071 4.2965 12 1 3.3110 1.0792 5.3587 13 6 3.2394 -2.1504 0.9787 14 8 2.9974 -2.6716 -0.0894 15 6 3.6573 -2.9975 2.1531 16 1 3.0823 -2.7081 3.0327 17 6 5.1481 -2.7893 2.4272 18 6 5.9552 -3.1955 1.1924 19 6 5.6958 -4.6697 0.8759 20 6 4.2050 -4.8779 0.6017 21 6 3.3979 -4.4717 1.8365 22 1 3.6997 -5.0843 2.6860 23 6 1.9295 -4.6767 1.5664 24 8 1.1972 -3.7186 1.4369 25 7 1.4301 -5.9247 1.4689 26 6 0.0557 -6.2693 1.0767 27 6 -0.0639 -7.8069 1.1290 28 6 1.0773 -8.2092 2.1001 29 6 2.1695 -7.1700 1.7441 30 1 -1.0499 0.0000 0.0003 31 1 3.0095 -0.4148 -0.9398 32 1 3.0088 1.0226 0.1099 33 1 1.6488 2.4277 2.1200 34 1 5.3329 -1.7390 2.6527 35 1 5.4504 -3.4023 3.2763 36 1 7.0173 -3.0476 1.3879 37 1 5.6530 -2.5828 0.3431 38 1 5.9980 -5.2824 1.7252 39 1 6.2712 -4.9592 -0.0035 40 1 4.0202 -5.9280 0.3757 41 1 3.9028 -4.2651 -0.2476 42 1 -0.6525 -5.8166 1.7708 43 1 -0.1396 -5.9185 0.0633 44 1 0.0966 -8.2436 0.1432 45 1 -1.0332 -8.1054 1.5283 46 1 1.4225 -9.2233 1.8986 47 1 0.7625 -8.1051 3.1384 48 1 2.7210 -7.4872 0.8590 49 1 2.8499 -7.0295 2.5840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281143689.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:44 Heat of formation + Delta-G solvation = -20.704580 kcal Electronic energy + Delta-G solvation = -31033.218861 eV Core-core repulsion = 27154.437793 eV Total energy + Delta-G solvation = -3878.781068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.95067 -40.32335 -38.44843 -37.83980 -36.62825 -33.75146 -33.40850 -32.92238 -31.81179 -31.39483 -29.80885 -28.30029 -26.63779 -25.44660 -23.76432 -23.43905 -21.97331 -21.68678 -20.60439 -20.26792 -19.26904 -18.26096 -18.03092 -17.56986 -17.30985 -16.71361 -16.21569 -16.04789 -15.78747 -15.53856 -15.08464 -14.75745 -14.56004 -14.44620 -14.31789 -14.24225 -13.91243 -13.79958 -13.45935 -13.36264 -13.18417 -13.11661 -12.98501 -12.72953 -12.66432 -12.27277 -12.19936 -12.16276 -12.02506 -11.77497 -11.62707 -11.58480 -11.36250 -11.23301 -11.02077 -10.87649 -10.52429 -10.50425 -9.79321 -9.64247 -9.57544 -8.13301 -5.86153 1.46033 1.47235 1.56540 1.78377 1.99000 2.10834 2.30570 2.38471 2.46183 3.22661 3.25358 3.54263 3.70353 3.71859 3.89384 3.94764 3.99727 4.06292 4.26001 4.31599 4.34134 4.40480 4.45063 4.50106 4.57339 4.62943 4.70788 4.71904 4.79908 4.88137 4.92995 4.99992 5.03001 5.05158 5.10224 5.12032 5.16091 5.31283 5.32130 5.37064 5.39811 5.41349 5.45097 5.50378 5.63942 5.72800 6.04810 6.51735 6.60698 7.15101 7.24061 7.35955 7.73842 8.17322 8.85307 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.004561 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.679044 B = 6137.490172 C = 6935.721805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.124 4.124 3 C 0.250 3.750 4 N -0.463 5.463 5 C -0.350 4.350 6 H 0.120 0.880 7 C -0.016 4.016 8 N -0.897 5.897 9 Si 0.989 3.011 10 H -0.258 1.258 11 H -0.291 1.291 12 H -0.269 1.269 13 C 0.495 3.505 14 O -0.613 6.613 15 C -0.072 4.072 16 H 0.063 0.937 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.101 4.101 20 C -0.123 4.123 21 C -0.069 4.069 22 H 0.122 0.878 23 C 0.522 3.478 24 O -0.576 6.576 25 N -0.628 5.628 26 C 0.098 3.902 27 C -0.119 4.119 28 C -0.122 4.122 29 C 0.090 3.910 30 H 0.225 0.775 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.263 0.737 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.026 0.974 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.044 0.956 43 H 0.038 0.962 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.741 -19.630 3.441 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.125 4.125 3 C 0.126 3.874 4 N -0.182 5.182 5 C -0.477 4.477 6 H 0.137 0.863 7 C -0.217 4.217 8 N -0.535 5.535 9 Si 0.812 3.188 10 H -0.182 1.182 11 H -0.217 1.217 12 H -0.194 1.194 13 C 0.286 3.714 14 O -0.500 6.500 15 C -0.094 4.094 16 H 0.082 0.918 17 C -0.147 4.147 18 C -0.155 4.155 19 C -0.139 4.139 20 C -0.160 4.160 21 C -0.090 4.090 22 H 0.140 0.860 23 C 0.311 3.689 24 O -0.454 6.454 25 N -0.364 5.364 26 C -0.025 4.025 27 C -0.156 4.156 28 C -0.160 4.160 29 C -0.031 4.031 30 H 0.242 0.758 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.044 0.956 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.134 0.866 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.191 -19.088 2.852 19.986 hybrid contribution -0.991 1.553 0.374 1.880 sum 4.200 -17.535 3.226 18.317 Atomic orbital electron populations 1.24935 0.96362 1.04705 1.04293 1.23713 0.95390 0.96658 0.96766 1.17898 0.83925 0.96756 0.88777 1.43752 1.57422 1.04716 1.12295 1.20228 1.26185 1.03561 0.97726 0.86279 1.26285 0.95149 0.98849 1.01421 1.70171 1.25990 1.17772 1.39611 0.85056 0.78721 0.77019 0.77957 1.18220 1.21671 1.19415 1.20431 0.79244 0.81984 0.89713 1.90329 1.56668 1.72151 1.30885 1.20852 0.99069 0.93222 0.96259 0.91825 1.21658 0.90595 1.02965 0.99509 1.21528 1.00189 0.97169 0.96659 1.21451 0.94148 0.95643 1.02614 1.21825 0.95523 1.01501 0.97164 1.21098 0.90035 0.96153 1.01700 0.85984 1.20959 0.91205 0.81213 0.75475 1.90762 1.62010 1.41657 1.50956 1.48612 1.13218 1.05934 1.68609 1.21970 0.83837 0.98221 0.98500 1.22613 1.01007 0.90431 1.01582 1.22809 0.93961 0.99499 0.99731 1.22689 0.95848 0.82668 1.01914 0.75802 0.93068 0.88262 0.92700 0.91213 0.88221 0.89640 0.95552 0.89124 0.90962 0.90608 0.91226 0.93746 0.94376 0.89390 0.88514 0.86633 0.90402 0.90193 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -15.25 19.25 74.32 1.43 -13.82 16 2 C -0.12 -7.13 11.48 31.12 0.36 -6.77 16 3 C 0.25 13.92 5.09 84.57 0.43 14.35 16 4 N -0.46 -25.37 2.60 -645.41 -1.68 -27.05 16 5 C -0.35 -18.43 8.51 84.04 0.71 -17.72 16 6 H 0.12 5.68 4.59 -2.91 -0.01 5.66 16 7 C -0.02 -0.86 5.18 84.92 0.44 -0.42 16 8 N -0.90 -50.69 8.94 21.66 0.19 -50.49 16 9 Si 0.99 41.29 29.56 68.60 2.03 43.32 16 10 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 13 C 0.50 25.38 4.03 87.66 0.35 25.73 16 14 O -0.61 -33.98 11.60 16.52 0.19 -33.79 16 15 C -0.07 -2.95 1.46 -11.54 -0.02 -2.97 16 16 H 0.06 2.90 7.72 -2.39 -0.02 2.88 16 17 C -0.11 -3.51 5.15 30.60 0.16 -3.35 16 18 C -0.12 -3.46 5.70 30.60 0.17 -3.28 16 19 C -0.10 -2.42 5.92 30.59 0.18 -2.24 16 20 C -0.12 -3.76 4.85 30.60 0.15 -3.61 16 21 C -0.07 -2.30 1.67 -11.54 -0.02 -2.32 16 22 H 0.12 3.04 7.28 -2.39 -0.02 3.02 16 23 C 0.52 21.11 6.47 87.66 0.57 21.68 16 24 O -0.58 -31.09 14.35 16.54 0.24 -30.86 16 25 N -0.63 -19.11 3.33 -811.81 -2.70 -21.81 16 26 C 0.10 2.76 6.87 86.72 0.60 3.35 16 27 C -0.12 -1.87 6.95 31.78 0.22 -1.65 16 28 C -0.12 -1.51 7.08 31.98 0.23 -1.28 16 29 C 0.09 1.62 5.86 86.85 0.51 2.13 16 30 H 0.23 9.94 7.80 -4.42 -0.03 9.91 16 31 H 0.05 2.80 7.56 -2.39 -0.02 2.79 16 32 H 0.10 5.60 6.37 -2.38 -0.02 5.58 16 33 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.07 2.49 5.44 -2.39 -0.01 2.47 16 35 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.03 0.98 7.21 -2.39 -0.02 0.96 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.88 6.44 -2.39 -0.02 1.87 16 41 H 0.07 2.90 5.09 -2.38 -0.01 2.89 16 42 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.08 1.26 7.29 -2.39 -0.02 1.24 16 49 H 0.09 1.34 7.23 -2.39 -0.02 1.33 16 Total: -1.00 -81.49 372.97 5.69 -75.80 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: 0.95 Total: 37.10 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 6.47 Total: 7.80 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -4.19 Total: -99.36 kcal Atomic # 8 Polarization: -65.08 SS G_CDS: 0.43 Total: -64.65 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -81.49 5.69 -75.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281143689.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.094 kcal (2) G-P(sol) polarization free energy of solvation -81.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds