Wall clock time and date at job start Tue Mar 31 2020 16:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46716 * 206.09615 * 3 2 1 5 5 C 1.37095 * 120.00122 * 89.77039 * 4 3 2 6 6 H 1.08002 * 120.00244 * 217.03570 * 5 4 3 7 7 C 1.38955 * 120.00072 * 37.03950 * 5 4 3 8 8 N 1.31413 * 119.99685 * 25.52540 * 7 5 4 9 9 Si 1.86801 * 119.99787 * 205.53209 * 7 5 4 10 10 H 1.48495 * 109.47408 * 94.98329 * 9 7 5 11 11 H 1.48503 * 109.46779 * 214.98502 * 9 7 5 12 12 H 1.48504 * 109.47111 * 334.97990 * 9 7 5 13 13 C 1.34778 * 119.99676 * 269.76777 * 4 3 2 14 14 O 1.21293 * 119.99884 * 184.68682 * 13 4 3 15 15 C 1.50695 * 120.00148 * 4.69238 * 13 4 3 16 16 H 1.09002 * 109.47051 * 331.52516 * 15 13 4 17 17 C 1.53008 * 109.47370 * 91.52528 * 15 13 4 18 18 C 1.52996 * 109.46959 * 180.02562 * 17 15 13 19 19 C 1.52993 * 109.47228 * 299.99678 * 18 17 15 20 20 C 1.52997 * 109.47220 * 60.00351 * 19 18 17 21 21 C 1.52998 * 109.47094 * 299.99929 * 20 19 18 22 22 H 1.08998 * 109.47627 * 300.00074 * 21 20 19 23 23 C 1.50698 * 109.47285 * 179.97438 * 21 20 19 24 24 O 1.21289 * 120.00130 * 264.47762 * 23 21 20 25 25 N 1.34775 * 120.00251 * 84.47354 * 23 21 20 26 26 C 1.47017 * 125.65185 * 183.81365 * 25 23 21 27 27 C 1.54315 * 107.27665 * 180.97253 * 26 25 23 28 28 C 1.55152 * 102.86531 * 22.52663 * 27 26 25 29 29 C 1.47424 * 125.64609 * 4.12988 * 25 23 21 30 30 H 4.40644 * 5.51516 * 179.97438 * 4 1 2 31 31 H 1.08998 * 109.47346 * 326.09070 * 3 2 1 32 32 H 1.08999 * 109.47042 * 86.09609 * 3 2 1 33 33 H 0.97004 * 119.99123 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.46542 * 300.00114 * 17 15 13 35 35 H 1.08998 * 109.47051 * 59.99453 * 17 15 13 36 36 H 1.09002 * 109.47360 * 60.00051 * 18 17 15 37 37 H 1.09007 * 109.46732 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.47108 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.47255 * 300.00437 * 19 18 17 40 40 H 1.09002 * 109.46937 * 59.99891 * 20 19 18 41 41 H 1.08999 * 109.47568 * 180.02562 * 20 19 18 42 42 H 1.09001 * 109.88381 * 300.51892 * 26 25 23 43 43 H 1.09002 * 109.88232 * 61.68546 * 26 25 23 44 44 H 1.09001 * 110.92344 * 264.11353 * 27 26 25 45 45 H 1.09002 * 110.74626 * 140.86317 * 27 26 25 46 46 H 1.08995 * 111.00436 * 206.22908 * 28 27 26 47 47 H 1.09003 * 111.03323 * 82.38902 * 28 27 26 48 48 H 1.09002 * 110.36610 * 274.66933 * 29 25 23 49 49 H 1.09003 * 110.36993 * 36.87989 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2414 0.6076 5 6 3.3577 1.3011 1.9588 6 1 3.1312 2.2053 2.5043 7 6 3.8760 0.1982 2.6266 8 7 4.6035 -0.6817 1.9758 9 14 3.5387 -0.0335 4.4492 10 1 2.3633 -0.9236 4.6258 11 1 4.7256 -0.6462 5.0982 12 1 3.2592 1.2851 5.0725 13 6 3.3623 2.3240 -0.1619 14 8 3.8460 3.3236 0.3260 15 6 3.0167 2.2927 -1.6284 16 1 3.0859 1.2690 -1.9962 17 6 1.5910 2.8109 -1.8276 18 6 1.2400 2.7785 -3.3165 19 6 2.2177 3.6651 -4.0903 20 6 3.6434 3.1470 -3.8911 21 6 3.9944 3.1794 -2.4023 22 1 3.9253 4.2032 -2.0348 23 6 5.3985 2.6685 -2.2059 24 8 5.5859 1.5050 -1.9191 25 7 6.4460 3.5043 -2.3491 26 6 7.8636 3.1239 -2.2649 27 6 8.6954 4.4077 -2.4672 28 6 7.6967 5.5308 -2.0818 29 6 6.3600 4.9528 -2.6097 30 1 -1.0503 -0.0002 -0.0003 31 1 3.0098 -0.8520 0.5733 32 1 3.0094 -0.0691 -1.0253 33 1 4.9650 -1.4518 2.4419 34 1 0.8944 2.1790 -1.2766 35 1 1.5217 3.8346 -1.4598 36 1 1.3091 1.7546 -3.6839 37 1 0.2241 3.1473 -3.4584 38 1 1.9673 3.6424 -5.1510 39 1 2.1486 4.6890 -3.7229 40 1 3.7125 2.1231 -4.2585 41 1 4.3400 3.7789 -4.4420 42 1 8.0744 2.6937 -1.2858 43 1 8.1012 2.4034 -3.0476 44 1 9.0078 4.5094 -3.5066 45 1 9.5602 4.4161 -1.8037 46 1 7.9450 6.4645 -2.5864 47 1 7.6625 5.6700 -1.0013 48 1 6.2613 5.1407 -3.6788 49 1 5.5179 5.3860 -2.0698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281143692.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:50 Heat of formation + Delta-G solvation = -18.243944 kcal Electronic energy + Delta-G solvation = -30747.034740 eV Core-core repulsion = 26868.360373 eV Total energy + Delta-G solvation = -3878.674367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.35458 -38.77294 -37.23756 -36.54503 -34.97084 -32.52836 -31.81870 -31.24233 -30.53773 -30.43253 -28.83177 -26.48829 -25.08613 -24.10030 -22.72905 -22.41143 -21.07493 -19.97219 -19.27291 -18.34021 -17.87227 -16.83136 -16.52772 -16.30382 -15.97986 -15.38480 -14.90406 -14.49473 -14.22665 -14.03564 -13.76240 -13.56791 -13.41279 -13.31784 -13.25217 -12.93687 -12.61276 -12.28688 -12.23200 -12.06168 -11.85259 -11.68012 -11.46327 -11.34037 -11.24321 -11.08265 -10.99679 -10.83595 -10.75394 -10.61395 -10.51711 -10.32060 -10.24038 -10.07023 -9.61149 -9.35493 -9.17079 -8.80897 -8.31411 -8.22169 -7.48668 -6.26865 -3.88027 3.15676 3.21934 3.30923 3.32266 3.35383 3.46740 3.59280 3.95732 4.24299 4.51100 4.60377 4.75550 4.85959 4.90115 4.92035 4.97870 5.17480 5.28884 5.29773 5.34821 5.40529 5.45905 5.52311 5.59512 5.66317 5.69836 5.72033 5.76342 5.78809 5.81211 5.95417 5.98466 6.03272 6.08242 6.19746 6.22591 6.27950 6.29816 6.34300 6.47791 6.51587 6.63640 6.69613 6.73648 7.03600 7.66011 7.87094 8.28384 8.38052 8.55043 8.68899 9.25793 9.45589 10.07725 10.77805 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010550 B = 0.005221 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.455918 B = 5361.748644 C = 7218.738547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.156 4.156 3 C 0.198 3.802 4 N -0.430 5.430 5 C -0.313 4.313 6 H 0.090 0.910 7 C 0.040 3.960 8 N -0.856 5.856 9 Si 0.912 3.088 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.480 3.520 14 O -0.580 6.580 15 C -0.089 4.089 16 H 0.091 0.909 17 C -0.109 4.109 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.106 4.106 21 C -0.080 4.080 22 H 0.097 0.903 23 C 0.540 3.460 24 O -0.521 6.521 25 N -0.621 5.621 26 C 0.107 3.893 27 C -0.130 4.130 28 C -0.134 4.134 29 C 0.101 3.899 30 H 0.208 0.792 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.267 0.733 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.064 0.936 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.051 8.452 -13.949 16.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.158 4.158 3 C 0.074 3.926 4 N -0.148 5.148 5 C -0.440 4.440 6 H 0.108 0.892 7 C -0.166 4.166 8 N -0.493 5.493 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.268 3.732 14 O -0.464 6.464 15 C -0.111 4.111 16 H 0.109 0.891 17 C -0.147 4.147 18 C -0.155 4.155 19 C -0.152 4.152 20 C -0.144 4.144 21 C -0.102 4.102 22 H 0.115 0.885 23 C 0.329 3.671 24 O -0.395 6.395 25 N -0.357 5.357 26 C -0.015 4.015 27 C -0.168 4.168 28 C -0.172 4.172 29 C -0.022 4.022 30 H 0.225 0.775 31 H 0.142 0.858 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.082 0.918 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.371 8.053 -13.467 15.696 hybrid contribution -0.256 -0.310 1.001 1.079 sum 0.115 7.743 -12.466 14.676 Atomic orbital electron populations 1.24601 0.95567 1.02871 1.04002 1.24427 0.95443 0.98268 0.97636 1.18672 0.81604 0.93019 0.99273 1.43232 1.55679 1.08790 1.07084 1.19353 1.41938 1.01274 0.81458 0.89239 1.25356 0.94005 0.97387 0.99832 1.70052 1.28135 1.13400 1.37702 0.86152 0.77947 0.78796 0.83290 1.20351 1.21008 1.19309 1.20072 0.81131 0.85238 0.86761 1.90489 1.47771 1.33313 1.74806 1.21154 0.94594 1.00471 0.94905 0.89077 1.21503 0.95110 1.01936 0.96149 1.21543 0.98494 1.00139 0.95292 1.21517 0.94277 0.99645 0.99807 1.21474 0.97088 1.02096 0.93756 1.21080 0.90967 1.01769 0.96392 0.88509 1.20265 0.85745 0.85378 0.75737 1.90761 1.85477 1.17379 1.45900 1.48397 1.05763 1.08711 1.72860 1.21841 0.80802 0.96801 1.02100 1.22622 0.98025 0.94238 1.01954 1.22779 0.94228 0.97954 1.02227 1.22286 0.98959 0.81100 0.99888 0.77525 0.85765 0.90011 0.92253 0.90789 0.91678 0.91826 0.91915 0.91860 0.91777 0.91341 0.91739 0.91375 0.91925 0.90853 0.90213 0.90092 0.90310 0.91801 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.55 18.74 29.55 0.55 -3.99 16 2 C -0.16 -3.31 12.35 -37.12 -0.46 -3.77 16 3 C 0.20 4.74 5.26 -6.83 -0.04 4.70 16 4 N -0.43 -11.59 2.48 -117.93 -0.29 -11.89 16 5 C -0.31 -9.13 8.85 -14.93 -0.13 -9.26 16 6 H 0.09 2.72 7.84 -52.49 -0.41 2.31 16 7 C 0.04 1.10 4.85 -17.46 -0.08 1.02 16 8 N -0.86 -24.50 11.70 55.50 0.65 -23.85 16 9 Si 0.91 21.53 29.62 -169.99 -5.04 16.50 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.48 12.27 5.63 -10.99 -0.06 12.21 16 14 O -0.58 -16.56 15.91 5.55 0.09 -16.48 16 15 C -0.09 -1.78 1.20 -91.77 -0.11 -1.89 16 16 H 0.09 1.87 5.48 -51.93 -0.28 1.59 16 17 C -0.11 -1.81 5.19 -26.73 -0.14 -1.95 16 18 C -0.12 -1.47 5.92 -26.74 -0.16 -1.63 16 19 C -0.11 -1.28 5.92 -26.74 -0.16 -1.44 16 20 C -0.11 -1.39 5.19 -26.73 -0.14 -1.53 16 21 C -0.08 -1.40 1.26 -91.77 -0.12 -1.52 16 22 H 0.10 1.70 6.42 -51.93 -0.33 1.36 16 23 C 0.54 10.87 6.20 -10.99 -0.07 10.80 16 24 O -0.52 -12.81 16.01 5.55 0.09 -12.72 16 25 N -0.62 -10.33 3.33 -170.53 -0.57 -10.90 16 26 C 0.11 1.59 6.87 -3.07 -0.02 1.57 16 27 C -0.13 -1.34 6.95 -24.90 -0.17 -1.51 16 28 C -0.13 -1.38 7.08 -24.59 -0.17 -1.56 16 29 C 0.10 1.25 6.64 -2.53 -0.02 1.23 16 30 H 0.21 2.81 7.80 -54.08 -0.42 2.39 16 31 H 0.13 3.24 5.65 -51.93 -0.29 2.95 16 32 H 0.08 1.85 5.86 -51.93 -0.30 1.55 16 33 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.07 1.30 6.16 -51.93 -0.32 0.99 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.08 1.03 6.89 -51.93 -0.36 0.67 16 LS Contribution 388.86 15.07 5.86 5.86 Total: -1.00 -35.86 388.86 -8.48 -44.34 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.78 Total: 7.65 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.49 Total: 1.48 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.21 Total: -46.63 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: 0.18 Total: -29.19 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.04 Total: 16.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.86 -8.48 -44.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281143692.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.098 kcal (2) G-P(sol) polarization free energy of solvation -35.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds