Wall clock time and date at job start Tue Mar 31 2020 16:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46716 * 206.09615 * 3 2 1 5 5 C 1.37095 * 120.00122 * 89.77039 * 4 3 2 6 6 H 1.08002 * 120.00244 * 217.03570 * 5 4 3 7 7 C 1.38955 * 120.00072 * 37.03950 * 5 4 3 8 8 N 1.31413 * 119.99685 * 25.52540 * 7 5 4 9 9 Si 1.86801 * 119.99787 * 205.53209 * 7 5 4 10 10 H 1.48495 * 109.47408 * 94.98329 * 9 7 5 11 11 H 1.48503 * 109.46779 * 214.98502 * 9 7 5 12 12 H 1.48504 * 109.47111 * 334.97990 * 9 7 5 13 13 C 1.34778 * 119.99676 * 269.76777 * 4 3 2 14 14 O 1.21293 * 119.99884 * 184.68682 * 13 4 3 15 15 C 1.50695 * 120.00148 * 4.69238 * 13 4 3 16 16 H 1.09002 * 109.47051 * 331.52516 * 15 13 4 17 17 C 1.53008 * 109.47370 * 91.52528 * 15 13 4 18 18 C 1.52996 * 109.46959 * 180.02562 * 17 15 13 19 19 C 1.52993 * 109.47228 * 299.99678 * 18 17 15 20 20 C 1.52997 * 109.47220 * 60.00351 * 19 18 17 21 21 C 1.52998 * 109.47094 * 299.99929 * 20 19 18 22 22 H 1.08998 * 109.47627 * 300.00074 * 21 20 19 23 23 C 1.50698 * 109.47285 * 179.97438 * 21 20 19 24 24 O 1.21289 * 120.00130 * 264.47762 * 23 21 20 25 25 N 1.34775 * 120.00251 * 84.47354 * 23 21 20 26 26 C 1.47017 * 125.65185 * 183.81365 * 25 23 21 27 27 C 1.54315 * 107.27665 * 180.97253 * 26 25 23 28 28 C 1.55152 * 102.86531 * 22.52663 * 27 26 25 29 29 C 1.47424 * 125.64609 * 4.12988 * 25 23 21 30 30 H 4.40644 * 5.51516 * 179.97438 * 4 1 2 31 31 H 1.08998 * 109.47346 * 326.09070 * 3 2 1 32 32 H 1.08999 * 109.47042 * 86.09609 * 3 2 1 33 33 H 0.97004 * 119.99123 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.46542 * 300.00114 * 17 15 13 35 35 H 1.08998 * 109.47051 * 59.99453 * 17 15 13 36 36 H 1.09002 * 109.47360 * 60.00051 * 18 17 15 37 37 H 1.09007 * 109.46732 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.47108 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.47255 * 300.00437 * 19 18 17 40 40 H 1.09002 * 109.46937 * 59.99891 * 20 19 18 41 41 H 1.08999 * 109.47568 * 180.02562 * 20 19 18 42 42 H 1.09001 * 109.88381 * 300.51892 * 26 25 23 43 43 H 1.09002 * 109.88232 * 61.68546 * 26 25 23 44 44 H 1.09001 * 110.92344 * 264.11353 * 27 26 25 45 45 H 1.09002 * 110.74626 * 140.86317 * 27 26 25 46 46 H 1.08995 * 111.00436 * 206.22908 * 28 27 26 47 47 H 1.09003 * 111.03323 * 82.38902 * 28 27 26 48 48 H 1.09002 * 110.36610 * 274.66933 * 29 25 23 49 49 H 1.09003 * 110.36993 * 36.87989 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2414 0.6076 5 6 3.3577 1.3011 1.9588 6 1 3.1312 2.2053 2.5043 7 6 3.8760 0.1982 2.6266 8 7 4.6035 -0.6817 1.9758 9 14 3.5387 -0.0335 4.4492 10 1 2.3633 -0.9236 4.6258 11 1 4.7256 -0.6462 5.0982 12 1 3.2592 1.2851 5.0725 13 6 3.3623 2.3240 -0.1619 14 8 3.8460 3.3236 0.3260 15 6 3.0167 2.2927 -1.6284 16 1 3.0859 1.2690 -1.9962 17 6 1.5910 2.8109 -1.8276 18 6 1.2400 2.7785 -3.3165 19 6 2.2177 3.6651 -4.0903 20 6 3.6434 3.1470 -3.8911 21 6 3.9944 3.1794 -2.4023 22 1 3.9253 4.2032 -2.0348 23 6 5.3985 2.6685 -2.2059 24 8 5.5859 1.5050 -1.9191 25 7 6.4460 3.5043 -2.3491 26 6 7.8636 3.1239 -2.2649 27 6 8.6954 4.4077 -2.4672 28 6 7.6967 5.5308 -2.0818 29 6 6.3600 4.9528 -2.6097 30 1 -1.0503 -0.0002 -0.0003 31 1 3.0098 -0.8520 0.5733 32 1 3.0094 -0.0691 -1.0253 33 1 4.9650 -1.4518 2.4419 34 1 0.8944 2.1790 -1.2766 35 1 1.5217 3.8346 -1.4598 36 1 1.3091 1.7546 -3.6839 37 1 0.2241 3.1473 -3.4584 38 1 1.9673 3.6424 -5.1510 39 1 2.1486 4.6890 -3.7229 40 1 3.7125 2.1231 -4.2585 41 1 4.3400 3.7789 -4.4420 42 1 8.0744 2.6937 -1.2858 43 1 8.1012 2.4034 -3.0476 44 1 9.0078 4.5094 -3.5066 45 1 9.5602 4.4161 -1.8037 46 1 7.9450 6.4645 -2.5864 47 1 7.6625 5.6700 -1.0013 48 1 6.2613 5.1407 -3.6788 49 1 5.5179 5.3860 -2.0698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281143692.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:48 Heat of formation + Delta-G solvation = -41.342583 kcal Electronic energy + Delta-G solvation = -30748.036372 eV Core-core repulsion = 26868.360373 eV Total energy + Delta-G solvation = -3879.675999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.86675 -40.36436 -38.68679 -37.94786 -36.98749 -34.43851 -33.12285 -33.06008 -31.94908 -31.60999 -29.90170 -28.41498 -26.92466 -25.51406 -24.14745 -23.59115 -22.05746 -21.27045 -20.78400 -19.92909 -19.65903 -18.40007 -18.20333 -17.82884 -17.45323 -17.05853 -16.69957 -16.09255 -15.81876 -15.48271 -15.18759 -14.89614 -14.72609 -14.54944 -14.41287 -14.23279 -14.12991 -14.04702 -13.83811 -13.52882 -13.35445 -13.20872 -13.07813 -12.87402 -12.68389 -12.37251 -12.29527 -12.22162 -12.20208 -11.98221 -11.81354 -11.63274 -11.47967 -11.41037 -11.21976 -11.13896 -10.71796 -10.69651 -10.21321 -9.66417 -9.61691 -8.41649 -6.12466 1.30688 1.33376 1.47208 1.64120 1.82846 1.99187 2.01512 2.04434 2.27919 2.91932 3.10180 3.40870 3.58157 3.65580 3.70154 3.78977 3.82527 4.01588 4.15614 4.18805 4.21296 4.26178 4.31891 4.36098 4.43045 4.44967 4.49555 4.58856 4.65178 4.81899 4.86674 4.88716 4.94117 4.98129 5.02235 5.06224 5.12776 5.15277 5.18476 5.22648 5.26663 5.29305 5.32422 5.40680 5.43211 5.52514 6.13051 6.43565 6.50601 6.78110 7.11528 7.19288 7.38561 8.00987 8.62857 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010550 B = 0.005221 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.455918 B = 5361.748644 C = 7218.738547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.224 4.224 3 C 0.210 3.790 4 N -0.446 5.446 5 C -0.348 4.348 6 H 0.064 0.936 7 C 0.001 3.999 8 N -0.886 5.886 9 Si 0.982 3.018 10 H -0.261 1.261 11 H -0.275 1.275 12 H -0.270 1.270 13 C 0.467 3.533 14 O -0.625 6.625 15 C -0.078 4.078 16 H 0.077 0.923 17 C -0.103 4.103 18 C -0.111 4.111 19 C -0.109 4.109 20 C -0.099 4.099 21 C -0.075 4.075 22 H 0.095 0.905 23 C 0.524 3.476 24 O -0.586 6.586 25 N -0.624 5.624 26 C 0.096 3.904 27 C -0.114 4.114 28 C -0.128 4.128 29 C 0.091 3.909 30 H 0.259 0.741 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.273 0.727 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.026 0.974 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.090 0.910 46 H 0.123 0.877 47 H 0.056 0.944 48 H 0.103 0.897 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.770 10.143 -16.269 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.225 4.225 3 C 0.087 3.913 4 N -0.163 5.163 5 C -0.475 4.475 6 H 0.081 0.919 7 C -0.202 4.202 8 N -0.523 5.523 9 Si 0.805 3.195 10 H -0.186 1.186 11 H -0.200 1.200 12 H -0.194 1.194 13 C 0.258 3.742 14 O -0.512 6.512 15 C -0.100 4.100 16 H 0.095 0.905 17 C -0.141 4.141 18 C -0.148 4.148 19 C -0.146 4.146 20 C -0.137 4.137 21 C -0.096 4.096 22 H 0.113 0.887 23 C 0.314 3.686 24 O -0.465 6.465 25 N -0.358 5.358 26 C -0.027 4.027 27 C -0.152 4.152 28 C -0.166 4.166 29 C -0.030 4.030 30 H 0.275 0.725 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.124 0.876 45 H 0.109 0.891 46 H 0.141 0.859 47 H 0.075 0.925 48 H 0.121 0.879 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.344 9.774 -15.822 18.646 hybrid contribution 0.302 -0.831 1.738 1.950 sum -1.042 8.943 -14.084 16.716 Atomic orbital electron populations 1.25601 0.96176 0.98760 0.99975 1.24007 0.95281 1.01920 1.01283 1.18297 0.84087 0.90667 0.98220 1.43494 1.56052 1.10001 1.06757 1.19333 1.43877 1.01260 0.83064 0.91854 1.26244 0.92973 0.96447 1.04575 1.70146 1.28501 1.13855 1.39751 0.85108 0.78448 0.78753 0.77192 1.18561 1.20029 1.19403 1.21109 0.79829 0.84189 0.89115 1.90423 1.49665 1.34790 1.76325 1.21093 0.97582 1.00676 0.90674 0.90455 1.21503 0.92224 1.00861 0.99553 1.21549 1.00479 1.01003 0.91798 1.21543 0.91893 0.99499 1.01675 1.21518 0.99471 1.02573 0.90099 1.21134 0.88798 1.00403 0.99309 0.88713 1.20899 0.87580 0.85033 0.75074 1.90717 1.86568 1.20109 1.49156 1.48605 1.05771 1.10468 1.70985 1.22040 0.81046 0.99673 0.99937 1.22620 0.97324 0.91027 1.04243 1.22819 0.92876 0.99569 1.01340 1.22668 0.99882 0.78230 1.02225 0.72478 0.88657 0.90257 0.91714 0.92098 0.92186 0.91706 0.89087 0.88352 0.90736 0.92059 0.89115 0.95497 0.91705 0.87584 0.89126 0.85870 0.92522 0.87900 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.35 18.74 74.32 1.39 -4.95 16 2 C -0.22 -9.65 12.35 31.13 0.38 -9.27 16 3 C 0.21 10.81 5.26 84.57 0.45 11.25 16 4 N -0.45 -25.81 2.48 -645.41 -1.60 -27.42 16 5 C -0.35 -21.71 8.85 84.04 0.74 -20.97 16 6 H 0.06 4.17 7.84 -2.91 -0.02 4.15 16 7 C 0.00 0.03 4.85 84.93 0.41 0.45 16 8 N -0.89 -53.59 11.70 21.67 0.25 -53.33 16 9 Si 0.98 45.80 29.62 68.60 2.03 47.83 16 10 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.47 25.67 5.63 87.66 0.49 26.17 16 14 O -0.63 -38.46 15.91 -3.07 -0.05 -38.51 16 15 C -0.08 -3.27 1.20 -11.54 -0.01 -3.28 16 16 H 0.08 3.41 5.48 -2.39 -0.01 3.40 16 17 C -0.10 -3.41 5.19 30.60 0.16 -3.25 16 18 C -0.11 -2.48 5.92 30.59 0.18 -2.30 16 19 C -0.11 -2.02 5.92 30.59 0.18 -1.84 16 20 C -0.10 -2.41 5.19 30.59 0.16 -2.25 16 21 C -0.07 -2.68 1.26 -11.54 -0.01 -2.69 16 22 H 0.09 3.40 6.42 -2.39 -0.02 3.38 16 23 C 0.52 22.36 6.20 87.66 0.54 22.90 16 24 O -0.59 -31.38 16.01 -3.06 -0.05 -31.43 16 25 N -0.62 -21.47 3.33 -811.81 -2.70 -24.17 16 26 C 0.10 2.97 6.87 86.73 0.60 3.57 16 27 C -0.11 -2.15 6.95 31.78 0.22 -1.93 16 28 C -0.13 -2.40 7.08 31.98 0.23 -2.17 16 29 C 0.09 2.13 6.64 86.86 0.58 2.71 16 30 H 0.26 5.67 7.80 -4.40 -0.03 5.63 16 31 H 0.10 5.38 5.65 -2.39 -0.01 5.36 16 32 H 0.08 3.95 5.86 -2.39 -0.01 3.93 16 33 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.06 2.14 6.16 -2.39 -0.01 2.13 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.07 1.75 6.89 -2.39 -0.02 1.73 16 Total: -1.00 -89.40 388.86 5.51 -83.90 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.93 Total: 30.99 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 6.69 Total: 12.14 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -4.05 Total: -104.92 kcal Atomic # 8 Polarization: -69.84 SS G_CDS: -0.10 Total: -69.94 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -89.40 5.51 -83.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281143692.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.556 kcal (2) G-P(sol) polarization free energy of solvation -89.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds