Wall clock time and date at job start Tue Mar 31 2020 16:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46831 * 146.89951 * 3 2 1 5 5 C 1.37099 * 120.00162 * 84.90319 * 4 3 2 6 6 H 1.07996 * 120.00218 * 164.26946 * 5 4 3 7 7 C 1.38950 * 119.99868 * 344.26464 * 5 4 3 8 8 N 1.31415 * 120.00066 * 0.16788 * 7 5 4 9 9 Si 1.86801 * 120.00229 * 180.16514 * 7 5 4 10 10 H 1.48500 * 109.46823 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46944 * 120.00082 * 9 7 5 12 12 H 1.48490 * 109.47260 * 240.00266 * 9 7 5 13 13 C 1.34771 * 119.99999 * 264.90196 * 4 3 2 14 14 O 1.21298 * 120.00006 * 175.03266 * 13 4 3 15 15 C 1.50704 * 120.00146 * 355.03530 * 13 4 3 16 16 H 1.08996 * 109.47093 * 28.14729 * 15 13 4 17 17 C 1.53003 * 109.46701 * 268.14743 * 15 13 4 18 18 C 1.53002 * 109.46835 * 179.97438 * 17 15 13 19 19 C 1.53001 * 109.46798 * 60.00503 * 18 17 15 20 20 C 1.53003 * 109.47017 * 299.99386 * 19 18 17 21 21 C 1.53001 * 109.47227 * 148.15065 * 15 13 4 22 22 H 1.08996 * 109.47358 * 59.99827 * 21 15 13 23 23 C 1.50701 * 109.46807 * 299.99733 * 21 15 13 24 24 O 1.21278 * 120.00185 * 332.80027 * 23 21 15 25 25 N 1.34778 * 119.99758 * 152.80136 * 23 21 15 26 26 C 1.47021 * 125.64685 * 4.68678 * 25 23 21 27 27 C 1.54316 * 107.27667 * 180.96834 * 26 25 23 28 28 C 1.55160 * 102.85888 * 22.53020 * 27 26 25 29 29 C 1.47426 * 125.64768 * 185.00026 * 25 23 21 30 30 H 4.40642 * 5.51409 * 179.97438 * 4 1 2 31 31 H 1.09000 * 109.47451 * 26.90029 * 3 2 1 32 32 H 1.08999 * 109.46988 * 266.89835 * 3 2 1 33 33 H 0.97001 * 120.00405 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47336 * 299.99837 * 17 15 13 35 35 H 1.08999 * 109.47034 * 60.00483 * 17 15 13 36 36 H 1.08999 * 109.47027 * 300.00630 * 18 17 15 37 37 H 1.08998 * 109.47076 * 180.02562 * 18 17 15 38 38 H 1.09008 * 109.47129 * 180.02562 * 19 18 17 39 39 H 1.08996 * 109.47358 * 59.99729 * 19 18 17 40 40 H 1.08999 * 109.47827 * 300.00497 * 20 19 18 41 41 H 1.08999 * 109.47034 * 179.97438 * 20 19 18 42 42 H 1.09003 * 109.88734 * 300.51454 * 26 25 23 43 43 H 1.08998 * 109.88343 * 61.67908 * 26 25 23 44 44 H 1.08999 * 110.92807 * 264.11878 * 27 26 25 45 45 H 1.08997 * 110.59103 * 140.78384 * 27 26 25 46 46 H 1.09004 * 111.00005 * 206.22939 * 28 27 26 47 47 H 1.08998 * 111.01080 * 82.38131 * 28 27 26 48 48 H 1.09005 * 110.36407 * 274.67101 * 29 25 23 49 49 H 1.09000 * 110.36933 * 36.99366 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1579 -0.7543 5 6 3.2622 2.3747 -0.1358 6 1 3.8483 3.1558 -0.5970 7 6 2.6382 2.6031 1.0845 8 7 1.9276 1.6516 1.6474 9 14 2.8094 4.2625 1.9251 10 1 3.6544 5.1547 1.0915 11 1 1.4659 4.8716 2.0963 12 1 3.4435 4.0804 3.2555 13 6 3.4562 1.0265 -2.0563 14 8 3.7736 2.0017 -2.7039 15 6 3.4223 -0.3322 -2.7075 16 1 2.6881 -0.9593 -2.2018 17 6 4.8041 -0.9811 -2.6055 18 6 4.7695 -2.3608 -3.2661 19 6 4.3838 -2.2113 -4.7391 20 6 3.0020 -1.5623 -4.8411 21 6 3.0368 -0.1822 -4.1805 22 1 3.7709 0.4449 -4.6863 23 6 1.6758 0.4571 -4.2810 24 8 0.8749 0.3231 -3.3801 25 7 1.3486 1.1777 -5.3719 26 6 2.1807 1.3395 -6.5731 27 6 1.4126 2.2631 -7.5417 28 6 0.4511 3.0314 -6.5969 29 6 0.0998 1.9394 -5.5557 30 1 -1.0502 -0.0004 0.0001 31 1 3.0098 -0.9156 -0.4649 32 1 3.0093 0.0564 1.0262 33 1 1.4923 1.8109 2.4995 34 1 5.5383 -0.3540 -3.1112 35 1 5.0787 -1.0880 -1.5561 36 1 4.0353 -2.9876 -2.7600 37 1 5.7538 -2.8233 -3.1931 38 1 4.3587 -3.1942 -5.2097 39 1 5.1179 -1.5844 -5.2452 40 1 2.2678 -2.1892 -4.3351 41 1 2.7274 -1.4554 -5.8905 42 1 3.1352 1.7924 -6.3047 43 1 2.3471 0.3698 -7.0422 44 1 0.8515 1.6807 -8.2724 45 1 2.0965 2.9513 -8.0385 46 1 -0.4394 3.3627 -7.1310 47 1 0.9573 3.8732 -6.1245 48 1 -0.6878 1.2901 -5.9380 49 1 -0.2075 2.3968 -4.6153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281143694.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:54 Heat of formation + Delta-G solvation = -29.564493 kcal Electronic energy + Delta-G solvation = -30921.106729 eV Core-core repulsion = 27041.941466 eV Total energy + Delta-G solvation = -3879.165263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.83197 -40.36361 -38.70195 -37.91373 -37.05193 -33.90266 -33.12087 -32.97397 -31.90667 -31.59686 -29.88156 -28.31293 -26.79911 -25.50293 -24.11308 -23.51869 -22.08231 -21.25394 -20.74263 -19.82796 -19.62664 -18.39526 -18.22248 -17.99628 -17.43214 -16.80452 -16.39164 -15.92144 -15.88751 -15.43687 -15.25620 -14.84771 -14.74451 -14.56231 -14.38488 -14.21086 -14.13485 -13.84937 -13.63181 -13.57538 -13.21041 -13.19074 -12.98756 -12.91256 -12.48973 -12.31600 -12.24604 -12.18720 -12.17465 -11.98860 -11.74899 -11.61681 -11.42727 -11.39074 -11.20773 -10.91798 -10.65751 -10.47973 -10.16060 -9.83189 -9.61328 -8.22453 -5.94751 1.30484 1.34374 1.48115 1.67618 1.90081 2.08115 2.15668 2.35542 2.55726 3.08620 3.16685 3.42489 3.62392 3.66532 3.79739 3.83884 3.96900 4.02560 4.15755 4.20490 4.27117 4.32118 4.36578 4.39903 4.46052 4.48391 4.53216 4.62881 4.67696 4.81020 4.86309 4.89402 4.95596 4.96981 5.09086 5.11679 5.13514 5.18315 5.24579 5.27426 5.30478 5.33548 5.40539 5.45104 5.47845 5.55707 6.03905 6.46044 6.54331 7.13714 7.23290 7.27075 7.45579 7.99525 8.67513 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.005094 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.472947 B = 5495.218164 C = 6702.758067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.115 4.115 3 C 0.242 3.758 4 N -0.455 5.455 5 C -0.339 4.339 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.882 5.882 9 Si 0.990 3.010 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.261 1.261 13 C 0.455 3.545 14 O -0.631 6.631 15 C -0.077 4.077 16 H 0.079 0.921 17 C -0.104 4.104 18 C -0.113 4.113 19 C -0.110 4.110 20 C -0.100 4.100 21 C -0.073 4.073 22 H 0.093 0.907 23 C 0.523 3.477 24 O -0.576 6.576 25 N -0.626 5.626 26 C 0.091 3.909 27 C -0.117 4.117 28 C -0.127 4.127 29 C 0.097 3.903 30 H 0.217 0.783 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.269 0.731 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.111 0.889 47 H 0.058 0.942 48 H 0.079 0.921 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 -8.271 -17.391 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.117 4.117 3 C 0.119 3.881 4 N -0.172 5.172 5 C -0.466 4.466 6 H 0.092 0.908 7 C -0.208 4.208 8 N -0.521 5.521 9 Si 0.814 3.186 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.186 1.186 13 C 0.246 3.754 14 O -0.519 6.519 15 C -0.099 4.099 16 H 0.097 0.903 17 C -0.142 4.142 18 C -0.150 4.150 19 C -0.147 4.147 20 C -0.138 4.138 21 C -0.095 4.095 22 H 0.111 0.889 23 C 0.313 3.687 24 O -0.455 6.455 25 N -0.360 5.360 26 C -0.031 4.031 27 C -0.154 4.154 28 C -0.165 4.165 29 C -0.025 4.025 30 H 0.234 0.766 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.130 0.870 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.818 -7.923 -16.936 18.786 hybrid contribution -0.668 1.479 1.297 2.077 sum 1.151 -6.444 -15.639 16.954 Atomic orbital electron populations 1.24753 0.96186 1.03935 1.05009 1.23287 0.94888 0.97036 0.96472 1.18445 0.84410 0.86972 0.98251 1.43850 1.55904 1.09147 1.08294 1.19653 1.31281 0.92054 1.03636 0.90810 1.26054 0.94805 1.02381 0.97524 1.70081 1.31538 1.32602 1.17881 0.84928 0.77759 0.77660 0.78268 1.20017 1.20795 1.18598 1.20857 0.81612 0.91495 0.81475 1.90431 1.55785 1.42383 1.63296 1.21058 1.00468 0.93421 0.94984 0.90290 1.21515 0.93060 0.97931 1.01724 1.21573 1.03169 0.94313 0.95977 1.21543 0.94807 1.01939 0.96387 1.21534 0.99888 0.91670 1.00694 1.21096 0.92716 0.99453 0.96207 0.88924 1.20877 0.89697 0.77972 0.80142 1.90730 1.53270 1.62142 1.39405 1.48612 1.20670 1.49339 1.17420 1.22345 0.94434 1.01706 0.84646 1.22653 0.98280 0.97977 0.96499 1.22779 1.01483 0.96169 0.96033 1.22301 0.87364 0.93971 0.98895 0.76592 0.90015 0.87773 0.92024 0.91743 0.91833 0.91497 0.89010 0.88563 0.90769 0.92110 0.89417 0.92385 0.88926 0.87967 0.88105 0.87026 0.92341 0.90326 0.94930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -14.09 19.24 74.32 1.43 -12.66 16 2 C -0.11 -6.08 11.01 31.13 0.34 -5.74 16 3 C 0.24 12.22 4.91 84.58 0.42 12.63 16 4 N -0.45 -25.57 2.60 -645.41 -1.68 -27.24 16 5 C -0.34 -20.52 9.41 84.04 0.79 -19.73 16 6 H 0.07 4.74 7.31 -2.91 -0.02 4.72 16 7 C -0.01 -0.39 5.36 84.93 0.45 0.07 16 8 N -0.88 -49.33 8.07 21.66 0.17 -49.15 16 9 Si 0.99 45.67 29.55 68.60 2.03 47.70 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 13 C 0.46 24.03 5.70 87.66 0.50 24.53 16 14 O -0.63 -37.32 15.68 -3.09 -0.05 -37.37 16 15 C -0.08 -3.09 0.91 -11.54 -0.01 -3.10 16 16 H 0.08 3.36 5.89 -2.39 -0.01 3.35 16 17 C -0.10 -3.22 5.10 30.60 0.16 -3.06 16 18 C -0.11 -2.37 5.92 30.60 0.18 -2.19 16 19 C -0.11 -1.96 5.92 30.60 0.18 -1.78 16 20 C -0.10 -2.38 5.19 30.61 0.16 -2.22 16 21 C -0.07 -2.53 1.23 -11.52 -0.01 -2.54 16 22 H 0.09 3.23 6.90 -2.39 -0.02 3.22 16 23 C 0.52 21.50 6.15 87.66 0.54 22.04 16 24 O -0.58 -29.34 16.10 -3.02 -0.05 -29.39 16 25 N -0.63 -20.90 3.33 -811.80 -2.70 -23.60 16 26 C 0.09 2.05 6.28 86.73 0.55 2.59 16 27 C -0.12 -1.83 6.95 31.78 0.22 -1.61 16 28 C -0.13 -2.65 7.08 31.99 0.23 -2.43 16 29 C 0.10 2.95 6.89 86.85 0.60 3.54 16 30 H 0.22 9.21 7.80 -4.41 -0.03 9.18 16 31 H 0.08 3.54 5.73 -2.39 -0.01 3.53 16 32 H 0.10 5.48 6.37 -2.39 -0.02 5.46 16 33 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 2.01 7.97 -2.39 -0.02 1.99 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.09 1.66 7.36 -2.39 -0.02 1.65 16 42 H 0.06 1.46 7.68 -2.39 -0.02 1.44 16 43 H 0.09 1.57 7.36 -2.39 -0.02 1.56 16 44 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 49 H 0.03 1.24 8.09 -2.39 -0.02 1.22 16 Total: -1.00 -83.81 386.24 5.37 -78.43 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.93 Total: 32.26 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 6.72 Total: 8.36 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -4.20 Total: -99.99 kcal Atomic # 8 Polarization: -66.66 SS G_CDS: -0.10 Total: -66.76 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -83.81 5.37 -78.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281143694.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.869 kcal (2) G-P(sol) polarization free energy of solvation -83.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds