Wall clock time and date at job start Tue Mar 31 2020 16:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47114 * 2 1 4 4 N 1.46497 * 109.46717 * 179.97438 * 3 2 1 5 5 C 1.46500 * 119.99717 * 96.93748 * 4 3 2 6 6 C 1.50695 * 109.46875 * 269.99448 * 5 4 3 7 7 C 1.38240 * 119.99919 * 90.00572 * 6 5 4 8 8 C 1.38237 * 119.99755 * 179.97438 * 7 6 5 9 9 C 1.38240 * 120.00082 * 359.96656 * 8 7 6 10 10 C 1.38234 * 120.00083 * 0.28780 * 9 8 7 11 11 C 1.38236 * 120.00026 * 269.97456 * 6 5 4 12 12 C 1.34771 * 120.00325 * 276.92897 * 4 3 2 13 13 O 1.21350 * 120.00322 * 176.17890 * 12 4 3 14 14 C 1.49453 * 119.99765 * 356.17831 * 12 4 3 15 15 O 1.21347 * 120.00238 * 5.69964 * 14 12 4 16 16 N 1.34781 * 119.99874 * 185.69994 * 14 12 4 17 17 C 1.46506 * 119.99933 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.47028 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47148 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47171 * 179.97438 * 19 18 17 21 21 H 1.07994 * 119.99803 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99640 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00274 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99520 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47385 * 90.00451 * 24 22 20 26 26 H 1.48505 * 109.46982 * 210.00202 * 24 22 20 27 27 H 1.48497 * 109.47267 * 329.99750 * 24 22 20 28 28 H 1.08996 * 109.47371 * 300.00096 * 1 2 3 29 29 H 1.09002 * 109.47073 * 60.00116 * 1 2 3 30 30 H 1.08997 * 109.47325 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46862 * 240.00033 * 2 1 3 32 32 H 1.08996 * 109.46703 * 120.00012 * 2 1 3 33 33 H 1.08996 * 109.47080 * 59.99725 * 3 2 1 34 34 H 1.09002 * 109.47056 * 299.99894 * 3 2 1 35 35 H 1.09006 * 109.47307 * 149.99392 * 5 4 3 36 36 H 1.09000 * 109.47406 * 29.99586 * 5 4 3 37 37 H 1.07993 * 119.99912 * 359.96827 * 7 6 5 38 38 H 1.07995 * 119.99904 * 179.97438 * 8 7 6 39 39 H 1.07998 * 119.99671 * 180.02562 * 9 8 7 40 40 H 1.07998 * 119.99952 * 179.72418 * 10 9 8 41 41 H 1.08003 * 120.00100 * 0.02562 * 11 6 5 42 42 H 0.96993 * 120.00017 * 0.02562 * 16 14 12 43 43 H 1.08999 * 109.46975 * 300.00516 * 17 16 14 44 44 H 1.09005 * 109.46653 * 60.00323 * 17 16 14 45 45 H 1.09003 * 109.46874 * 299.99763 * 18 17 16 46 46 H 1.08999 * 109.47287 * 60.00119 * 18 17 16 47 47 H 1.08999 * 109.46793 * 300.00335 * 19 18 17 48 48 H 1.09005 * 109.46716 * 60.00069 * 19 18 17 49 49 H 0.97002 * 119.99860 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2380 1.5954 -1.2586 6 6 4.4894 0.2375 -1.8616 7 6 3.5681 -0.3131 -2.7329 8 6 3.7990 -1.5586 -3.2865 9 6 4.9514 -2.2531 -2.9693 10 6 5.8701 -1.7048 -2.0939 11 6 5.6415 -0.4573 -1.5440 12 6 4.1784 1.3018 1.1595 13 8 5.3899 1.2320 1.1527 14 6 3.4331 1.2317 2.4530 15 8 2.2201 1.1971 2.4533 16 7 4.1083 1.2068 3.6193 17 6 3.3777 1.1387 4.8874 18 6 4.3730 1.1236 6.0492 19 6 3.6100 1.0518 7.3735 20 6 4.5904 1.0364 8.5178 21 1 5.6515 1.0744 8.3204 22 6 4.1326 0.9747 9.8169 23 7 2.8405 0.9289 10.0574 24 14 5.3479 0.9563 11.2355 25 1 5.6300 2.3499 11.6638 26 1 4.7696 0.1964 12.3728 27 1 6.6100 0.3078 10.7977 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 5.1904 2.0899 -1.0669 36 1 3.6492 2.1971 -1.9510 37 1 2.6681 0.2296 -2.9810 38 1 3.0792 -1.9890 -3.9668 39 1 5.1319 -3.2260 -3.4021 40 1 6.7683 -2.2494 -1.8427 41 1 6.3612 -0.0271 -0.8633 42 1 5.0778 1.2348 3.6191 43 1 2.7263 2.0079 4.9785 44 1 2.7763 0.2298 4.9118 45 1 5.0246 0.2546 5.9581 46 1 4.9740 2.0326 6.0246 47 1 2.9581 1.9206 7.4647 48 1 3.0093 0.1426 7.3978 49 1 2.5185 0.8852 10.9713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286794291.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:12 Heat of formation + Delta-G solvation = -55.708594 kcal Electronic energy + Delta-G solvation = -28188.294787 eV Core-core repulsion = 24307.995831 eV Total energy + Delta-G solvation = -3880.298956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00646 -39.50629 -38.35851 -36.85328 -35.38867 -33.52856 -33.33057 -31.69380 -31.25023 -31.13225 -27.65148 -26.99874 -26.22641 -24.07883 -22.81721 -22.60366 -21.74911 -21.37230 -20.76193 -19.57203 -17.70428 -17.34952 -16.96756 -16.38867 -16.08042 -15.79558 -15.46402 -15.37729 -14.87816 -14.73884 -14.71471 -14.44759 -13.91717 -13.74206 -13.64614 -13.43813 -13.16134 -12.88275 -12.61987 -12.35933 -12.26111 -12.04018 -11.87538 -11.81864 -11.69566 -11.29053 -11.21127 -11.19833 -10.92699 -10.76509 -10.74604 -10.59922 -9.90625 -9.67644 -9.35535 -9.18309 -9.15203 -9.13052 -8.98856 -8.78187 -8.38670 -6.03460 -4.06404 0.97989 1.15654 1.44643 2.35433 3.20612 3.30553 3.36910 3.39413 3.42028 3.64967 4.35362 4.43960 4.47006 4.54958 4.74445 4.78588 4.84908 4.91080 4.97480 5.18371 5.23168 5.28204 5.32559 5.33200 5.38446 5.59119 5.62756 5.68542 5.70096 5.72764 5.79384 5.89053 6.01955 6.07402 6.13063 6.18285 6.26757 6.26847 6.33703 6.37904 6.53466 6.71292 6.73658 6.88052 6.94659 7.33077 7.60842 7.72191 7.72520 7.94920 8.07768 8.36259 9.00087 9.57974 11.07800 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017671 B = 0.002153 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.136821 B =13003.350596 C =13746.343248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.096 3.904 4 N -0.581 5.581 5 C 0.152 3.848 6 C -0.108 4.108 7 C -0.103 4.103 8 C -0.126 4.126 9 C -0.117 4.117 10 C -0.124 4.124 11 C -0.094 4.094 12 C 0.509 3.491 13 O -0.521 6.521 14 C 0.499 3.501 15 O -0.515 6.515 16 N -0.692 5.692 17 C 0.115 3.885 18 C -0.123 4.123 19 C 0.025 3.975 20 C -0.522 4.522 21 H 0.056 0.944 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.893 3.107 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.410 0.590 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.158 -1.370 -29.845 29.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C -0.026 4.026 4 N -0.313 5.313 5 C 0.030 3.970 6 C -0.109 4.109 7 C -0.122 4.122 8 C -0.144 4.144 9 C -0.135 4.135 10 C -0.142 4.142 11 C -0.113 4.113 12 C 0.291 3.709 13 O -0.396 6.396 14 C 0.279 3.721 15 O -0.393 6.393 16 N -0.343 5.343 17 C -0.007 4.007 18 C -0.161 4.161 19 C -0.013 4.013 20 C -0.561 4.561 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.533 5.533 24 Si 0.721 3.279 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.246 0.754 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.515 -1.415 -29.664 29.703 hybrid contribution 0.999 -0.189 0.804 1.297 sum 0.485 -1.604 -28.860 28.909 Atomic orbital electron populations 1.21629 0.95077 1.01700 1.01846 1.21866 0.96360 0.96629 1.02305 1.22312 0.77172 0.98452 1.04671 1.47893 1.07977 1.70118 1.05357 1.20504 0.98590 0.93596 0.84282 1.20170 0.95267 0.97373 0.98116 1.21016 0.98460 0.95775 0.96901 1.21113 0.97637 0.95160 1.00489 1.21192 0.94487 0.99767 0.98037 1.21204 0.99641 0.95815 0.97512 1.21259 0.97095 0.94579 0.98335 1.20374 0.87489 0.77627 0.85366 1.90723 1.13551 1.48191 1.87151 1.19989 0.87800 0.79049 0.85242 1.90664 1.13146 1.48651 1.86804 1.46090 1.11624 1.70961 1.05649 1.21824 0.95737 1.02394 0.80740 1.21924 0.97809 1.01270 0.95069 1.19028 0.95491 0.97658 0.89110 1.21198 0.93081 1.50807 0.90983 0.92584 1.25027 0.95157 0.95247 0.99037 1.69962 1.12606 1.50461 1.20274 0.86574 0.81287 0.78061 0.81960 1.20644 1.21206 1.19867 0.91945 0.93145 0.92808 0.92222 0.91505 0.86549 0.91080 0.88731 0.89160 0.86179 0.86146 0.86218 0.86047 0.85290 0.75432 0.91128 0.91155 0.92474 0.92471 0.96221 0.96219 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.13 -1.35 5.75 -26.73 -0.15 -1.51 16 3 C 0.10 0.92 5.03 -4.04 -0.02 0.90 16 4 N -0.58 -6.17 2.47 -175.57 -0.43 -6.60 16 5 C 0.15 1.32 5.54 -5.20 -0.03 1.29 16 6 C -0.11 -1.00 5.46 -104.62 -0.57 -1.57 16 7 C -0.10 -0.83 7.99 -39.58 -0.32 -1.15 16 8 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 9 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 10 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 11 C -0.09 -0.96 9.61 -39.58 -0.38 -1.34 16 12 C 0.51 6.74 7.67 -11.59 -0.09 6.65 16 13 O -0.52 -7.58 15.39 5.50 0.08 -7.50 16 14 C 0.50 7.29 7.66 -11.58 -0.09 7.20 16 15 O -0.52 -8.05 11.83 5.50 0.07 -7.99 16 16 N -0.69 -10.25 5.55 -60.72 -0.34 -10.59 16 17 C 0.12 1.94 5.67 -4.04 -0.02 1.92 16 18 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 19 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 20 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 21 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 24 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 27 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 32 H 0.07 0.86 7.01 -51.93 -0.36 0.50 16 33 H 0.12 1.34 5.41 -51.93 -0.28 1.06 16 34 H 0.07 0.51 7.82 -51.93 -0.41 0.10 16 35 H 0.09 0.86 7.42 -51.93 -0.39 0.48 16 36 H 0.09 0.55 7.79 -51.93 -0.40 0.15 16 37 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.13 1.41 7.42 -52.48 -0.39 1.02 16 42 H 0.41 5.63 7.96 -40.82 -0.32 5.30 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 403.32 15.07 6.08 6.08 Total: -1.00 -31.27 403.32 -9.93 -41.20 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.92 Total: 2.98 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -3.19 Total: -8.16 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.03 Total: -43.07 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.15 Total: -15.48 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.27 -9.93 -41.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286794291.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.506 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds