Wall clock time and date at job start Tue Mar 31 2020 16:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47114 * 2 1 4 4 N 1.46497 * 109.46717 * 179.97438 * 3 2 1 5 5 C 1.46500 * 119.99717 * 96.93748 * 4 3 2 6 6 C 1.50695 * 109.46875 * 269.99448 * 5 4 3 7 7 C 1.38240 * 119.99919 * 90.00572 * 6 5 4 8 8 C 1.38237 * 119.99755 * 179.97438 * 7 6 5 9 9 C 1.38240 * 120.00082 * 359.96656 * 8 7 6 10 10 C 1.38234 * 120.00083 * 0.28780 * 9 8 7 11 11 C 1.38236 * 120.00026 * 269.97456 * 6 5 4 12 12 C 1.34771 * 120.00325 * 276.92897 * 4 3 2 13 13 O 1.21350 * 120.00322 * 176.17890 * 12 4 3 14 14 C 1.49453 * 119.99765 * 356.17831 * 12 4 3 15 15 O 1.21347 * 120.00238 * 5.69964 * 14 12 4 16 16 N 1.34781 * 119.99874 * 185.69994 * 14 12 4 17 17 C 1.46506 * 119.99933 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.47028 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47148 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47171 * 179.97438 * 19 18 17 21 21 H 1.07994 * 119.99803 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99640 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00274 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99520 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47385 * 90.00451 * 24 22 20 26 26 H 1.48505 * 109.46982 * 210.00202 * 24 22 20 27 27 H 1.48497 * 109.47267 * 329.99750 * 24 22 20 28 28 H 1.08996 * 109.47371 * 300.00096 * 1 2 3 29 29 H 1.09002 * 109.47073 * 60.00116 * 1 2 3 30 30 H 1.08997 * 109.47325 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46862 * 240.00033 * 2 1 3 32 32 H 1.08996 * 109.46703 * 120.00012 * 2 1 3 33 33 H 1.08996 * 109.47080 * 59.99725 * 3 2 1 34 34 H 1.09002 * 109.47056 * 299.99894 * 3 2 1 35 35 H 1.09006 * 109.47307 * 149.99392 * 5 4 3 36 36 H 1.09000 * 109.47406 * 29.99586 * 5 4 3 37 37 H 1.07993 * 119.99912 * 359.96827 * 7 6 5 38 38 H 1.07995 * 119.99904 * 179.97438 * 8 7 6 39 39 H 1.07998 * 119.99671 * 180.02562 * 9 8 7 40 40 H 1.07998 * 119.99952 * 179.72418 * 10 9 8 41 41 H 1.08003 * 120.00100 * 0.02562 * 11 6 5 42 42 H 0.96993 * 120.00017 * 0.02562 * 16 14 12 43 43 H 1.08999 * 109.46975 * 300.00516 * 17 16 14 44 44 H 1.09005 * 109.46653 * 60.00323 * 17 16 14 45 45 H 1.09003 * 109.46874 * 299.99763 * 18 17 16 46 46 H 1.08999 * 109.47287 * 60.00119 * 18 17 16 47 47 H 1.08999 * 109.46793 * 300.00335 * 19 18 17 48 48 H 1.09005 * 109.46716 * 60.00069 * 19 18 17 49 49 H 0.97002 * 119.99860 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2380 1.5954 -1.2586 6 6 4.4894 0.2375 -1.8616 7 6 3.5681 -0.3131 -2.7329 8 6 3.7990 -1.5586 -3.2865 9 6 4.9514 -2.2531 -2.9693 10 6 5.8701 -1.7048 -2.0939 11 6 5.6415 -0.4573 -1.5440 12 6 4.1784 1.3018 1.1595 13 8 5.3899 1.2320 1.1527 14 6 3.4331 1.2317 2.4530 15 8 2.2201 1.1971 2.4533 16 7 4.1083 1.2068 3.6193 17 6 3.3777 1.1387 4.8874 18 6 4.3730 1.1236 6.0492 19 6 3.6100 1.0518 7.3735 20 6 4.5904 1.0364 8.5178 21 1 5.6515 1.0744 8.3204 22 6 4.1326 0.9747 9.8169 23 7 2.8405 0.9289 10.0574 24 14 5.3479 0.9563 11.2355 25 1 5.6300 2.3499 11.6638 26 1 4.7696 0.1964 12.3728 27 1 6.6100 0.3078 10.7977 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 5.1904 2.0899 -1.0669 36 1 3.6492 2.1971 -1.9510 37 1 2.6681 0.2296 -2.9810 38 1 3.0792 -1.9890 -3.9668 39 1 5.1319 -3.2260 -3.4021 40 1 6.7683 -2.2494 -1.8427 41 1 6.3612 -0.0271 -0.8633 42 1 5.0778 1.2348 3.6191 43 1 2.7263 2.0079 4.9785 44 1 2.7763 0.2298 4.9118 45 1 5.0246 0.2546 5.9581 46 1 4.9740 2.0326 6.0246 47 1 2.9581 1.9206 7.4647 48 1 3.0093 0.1426 7.3978 49 1 2.5185 0.8852 10.9713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286794291.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:11 Heat of formation + Delta-G solvation = -72.931507 kcal Electronic energy + Delta-G solvation = -28189.041628 eV Core-core repulsion = 24307.995831 eV Total energy + Delta-G solvation = -3881.045797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.03049 -40.31048 -39.37749 -37.85222 -36.79400 -35.18685 -34.28009 -33.04042 -32.43054 -31.76582 -29.08568 -27.97718 -27.26888 -25.54062 -23.88857 -23.45303 -22.59826 -22.37891 -22.18015 -20.74069 -18.80924 -18.50855 -18.15845 -17.75903 -17.13966 -16.91938 -16.47507 -16.40344 -16.21911 -15.84798 -15.77062 -15.55291 -15.07070 -14.89719 -14.28886 -14.28022 -14.21978 -14.04396 -13.78442 -13.55035 -13.52476 -13.31449 -13.04964 -12.85526 -12.76278 -12.57041 -12.44114 -12.40391 -12.13461 -11.96855 -11.83848 -11.73400 -11.59832 -11.50148 -11.22940 -10.55533 -10.48168 -10.26789 -9.93559 -9.79648 -9.61002 -8.20218 -6.31087 0.26623 0.38909 0.50963 1.35015 1.41546 1.42261 1.53403 2.09614 2.39319 2.45599 2.94833 3.13595 3.28272 3.81075 3.87986 4.04401 4.08305 4.15735 4.17291 4.18907 4.26363 4.30242 4.47312 4.51832 4.53291 4.58654 4.69031 4.75150 4.78627 4.89336 4.90812 4.98792 5.09451 5.13445 5.14089 5.16027 5.19467 5.31607 5.43057 5.48971 5.51116 5.56164 5.62968 5.66019 5.69744 5.83542 5.92294 6.11322 6.19515 6.24358 6.66652 6.85663 6.92891 7.38200 8.91659 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017671 B = 0.002153 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.136821 B =13003.350596 C =13746.343248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 C 0.095 3.905 4 N -0.570 5.570 5 C 0.150 3.850 6 C -0.118 4.118 7 C -0.103 4.103 8 C -0.129 4.129 9 C -0.123 4.123 10 C -0.139 4.139 11 C -0.116 4.116 12 C 0.508 3.492 13 O -0.539 6.539 14 C 0.496 3.504 15 O -0.526 6.526 16 N -0.690 5.690 17 C 0.131 3.869 18 C -0.106 4.106 19 C 0.026 3.974 20 C -0.542 4.542 21 H 0.063 0.937 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.965 3.035 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.263 1.263 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.416 0.584 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.066 0.934 47 H -0.003 1.003 48 H -0.005 1.005 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -1.256 -31.961 31.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C -0.027 4.027 4 N -0.301 5.301 5 C 0.029 3.971 6 C -0.119 4.119 7 C -0.121 4.121 8 C -0.147 4.147 9 C -0.141 4.141 10 C -0.157 4.157 11 C -0.135 4.135 12 C 0.290 3.710 13 O -0.416 6.416 14 C 0.278 3.722 15 O -0.404 6.404 16 N -0.342 5.342 17 C 0.008 3.992 18 C -0.144 4.144 19 C -0.012 4.012 20 C -0.580 4.580 21 H 0.081 0.919 22 C -0.199 4.199 23 N -0.573 5.573 24 Si 0.790 3.210 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.187 1.187 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.105 0.895 36 H 0.143 0.857 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.130 0.870 42 H 0.253 0.747 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.015 0.985 48 H 0.014 0.986 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.369 -1.296 -31.823 31.851 hybrid contribution 0.898 -0.255 1.374 1.661 sum 0.529 -1.551 -30.449 30.493 Atomic orbital electron populations 1.21601 0.94049 1.01917 1.02303 1.21795 0.97193 0.96577 1.00994 1.22371 0.76389 0.98291 1.05605 1.47975 1.08515 1.68402 1.05200 1.20720 0.98765 0.93922 0.83651 1.20247 0.95326 0.97566 0.98731 1.21295 0.98791 0.95977 0.96079 1.21473 0.97782 0.95063 1.00402 1.21488 0.94407 1.00620 0.97580 1.21389 1.00469 0.95746 0.98049 1.21285 0.97713 0.95468 0.98999 1.20092 0.87180 0.78173 0.85556 1.90721 1.14075 1.49527 1.87319 1.20334 0.87765 0.78442 0.85707 1.90674 1.13720 1.48872 1.87146 1.45911 1.11848 1.71380 1.05095 1.21426 0.94929 1.01798 0.81063 1.21634 0.97632 1.02035 0.93075 1.18923 0.95107 0.95386 0.91759 1.21668 0.93874 1.50407 0.92070 0.91871 1.25982 0.97030 0.94802 1.02136 1.70096 1.14669 1.51503 1.21014 0.85446 0.78994 0.78398 0.78200 1.19784 1.20904 1.18725 0.93501 0.90617 0.92767 0.91291 0.94967 0.88426 0.87310 0.89543 0.85678 0.83787 0.83790 0.84372 0.85448 0.87021 0.74690 0.91595 0.92023 0.91782 0.91497 0.98453 0.98620 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.13 -2.40 5.75 30.60 0.18 -2.23 16 3 C 0.09 1.64 5.03 86.38 0.43 2.07 16 4 N -0.57 -11.34 2.47 -827.74 -2.05 -13.38 16 5 C 0.15 2.31 5.54 85.63 0.47 2.79 16 6 C -0.12 -2.00 5.46 -19.87 -0.11 -2.11 16 7 C -0.10 -1.37 7.99 22.27 0.18 -1.19 16 8 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 9 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 10 C -0.14 -2.49 10.05 22.27 0.22 -2.26 16 11 C -0.12 -2.37 9.61 22.27 0.21 -2.15 16 12 C 0.51 13.37 7.67 87.27 0.67 14.04 16 13 O -0.54 -15.83 15.39 -3.25 -0.05 -15.88 16 14 C 0.50 14.63 7.66 87.27 0.67 15.30 16 15 O -0.53 -16.66 11.83 -3.24 -0.04 -16.70 16 16 N -0.69 -20.59 5.55 -464.39 -2.58 -23.17 16 17 C 0.13 4.50 5.67 86.38 0.49 4.99 16 18 C -0.11 -4.12 5.27 30.59 0.16 -3.96 16 19 C 0.03 1.34 4.97 29.85 0.15 1.49 16 20 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 21 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 22 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 23 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 24 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.17 6.32 -2.39 -0.02 1.15 16 32 H 0.03 0.83 7.01 -2.39 -0.02 0.81 16 33 H 0.10 2.15 5.41 -2.40 -0.01 2.14 16 34 H 0.11 1.11 7.82 -2.39 -0.02 1.09 16 35 H 0.09 1.50 7.42 -2.38 -0.02 1.48 16 36 H 0.13 1.05 7.79 -2.39 -0.02 1.03 16 37 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.11 2.58 7.42 -2.91 -0.02 2.56 16 42 H 0.42 11.40 7.96 -92.71 -0.74 10.67 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 48 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 49 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -68.81 403.32 3.39 -65.43 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.20 Total: 21.57 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 5.59 Total: -7.63 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -4.34 Total: -92.88 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.09 Total: -32.58 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -68.81 3.39 -65.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286794291.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.504 kcal (2) G-P(sol) polarization free energy of solvation -68.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds