Wall clock time and date at job start Tue Mar 31 2020 16:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47260 * 2 1 4 4 N 1.46899 * 109.46730 * 120.00295 * 2 1 3 5 5 C 1.46894 * 111.00477 * 71.96904 * 4 2 1 6 6 C 1.50702 * 109.47108 * 75.84085 * 5 4 2 7 7 O 1.21293 * 119.99946 * 5.21831 * 6 5 4 8 8 N 1.34770 * 120.00364 * 185.21370 * 6 5 4 9 9 C 1.46502 * 120.00354 * 184.50348 * 8 6 5 10 10 C 1.50702 * 109.47185 * 270.00291 * 9 8 6 11 11 H 1.08001 * 119.99971 * 0.02562 * 10 9 8 12 12 C 1.37871 * 119.99850 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00164 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00222 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47126 * 59.99648 * 14 12 10 16 16 H 1.48496 * 109.47573 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46933 * 300.00213 * 14 12 10 18 18 C 1.39927 * 119.99913 * 4.50785 * 8 6 5 19 19 C 1.38873 * 120.07024 * 68.70040 * 18 8 6 20 20 C 1.38110 * 119.92863 * 180.23369 * 19 18 8 21 21 C 1.38281 * 120.07276 * 359.47294 * 20 19 18 22 22 C 1.38285 * 120.13742 * 0.55042 * 21 20 19 23 23 C 1.38114 * 120.07188 * 359.70698 * 22 21 20 24 24 C 1.46900 * 111.00166 * 308.01001 * 4 2 1 25 25 C 1.54039 * 113.81971 * 278.51495 * 24 4 2 26 26 O 1.44449 * 85.42242 * 223.23145 * 25 24 4 27 27 C 1.44179 * 93.38116 * 24.08832 * 26 25 24 28 28 H 1.09004 * 109.47418 * 306.33765 * 1 2 3 29 29 H 1.09000 * 109.47249 * 66.34117 * 1 2 3 30 30 H 1.09005 * 109.47320 * 186.34019 * 1 2 3 31 31 H 1.08999 * 109.46625 * 239.99737 * 2 1 3 32 32 H 1.08992 * 109.47131 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46690 * 299.99993 * 3 2 1 34 34 H 1.08998 * 109.46831 * 59.99652 * 3 2 1 35 35 H 1.08997 * 109.47158 * 315.84062 * 5 4 2 36 36 H 1.09003 * 109.46987 * 195.83485 * 5 4 2 37 37 H 1.08998 * 109.46997 * 30.00497 * 9 8 6 38 38 H 1.09005 * 109.47206 * 150.00341 * 9 8 6 39 39 H 0.97000 * 120.00380 * 180.02562 * 13 12 10 40 40 H 1.08001 * 120.03589 * 359.96283 * 19 18 8 41 41 H 1.08005 * 119.96153 * 179.72757 * 20 19 18 42 42 H 1.07993 * 119.93293 * 180.25470 * 21 20 19 43 43 H 1.08003 * 119.96422 * 179.72348 * 22 21 20 44 44 H 1.08003 * 120.03827 * 180.02562 * 23 22 21 45 45 H 1.09003 * 112.99534 * 50.34124 * 24 4 2 46 46 H 1.08994 * 113.86370 * 337.33869 * 25 24 4 47 47 H 1.09004 * 113.86099 * 109.04354 * 25 24 4 48 48 H 1.08997 * 113.86310 * 221.76172 * 27 26 25 49 49 H 1.09002 * 113.98392 * 90.07076 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.7949 -2.1408 1.0998 6 6 2.8086 -2.7431 0.1614 7 8 3.6946 -2.0536 -0.2979 8 7 2.7310 -4.0477 -0.1675 9 6 3.7714 -4.6566 -0.9999 10 6 3.3922 -4.5272 -2.4527 11 1 2.4687 -4.0398 -2.7284 12 6 4.2241 -5.0311 -3.4298 13 7 5.3489 -5.6242 -3.0942 14 14 3.7545 -4.8702 -5.2306 15 1 3.6193 -3.4333 -5.5805 16 1 4.8085 -5.4886 -6.0744 17 1 2.4618 -5.5613 -5.4687 18 6 1.6564 -4.8208 0.2861 19 6 0.3776 -4.5900 -0.2037 20 6 -0.6817 -5.3516 0.2496 21 6 -0.4682 -6.3502 1.1820 22 6 0.8040 -6.5822 1.6720 23 6 1.8666 -5.8206 1.2267 24 6 1.3988 -0.1458 2.4133 25 6 2.0629 1.1472 2.9234 26 8 1.9438 0.5536 4.2349 27 6 1.9065 -0.7912 3.7165 28 1 -0.3634 0.6089 0.8278 29 1 -0.3634 0.4124 -0.9413 30 1 -0.3634 -1.0214 0.1135 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 0.7910 -2.3273 0.7184 36 1 1.8989 -2.5933 2.0860 37 1 4.7199 -4.1486 -0.8254 38 1 3.8714 -5.7112 -0.7431 39 1 5.9345 -5.9784 -3.7816 40 1 0.2108 -3.8130 -0.9350 41 1 -1.6772 -5.1696 -0.1276 42 1 -1.2975 -6.9470 1.5318 43 1 0.9668 -7.3599 2.4035 44 1 2.8600 -6.0025 1.6094 45 1 0.3125 -0.0857 2.3461 46 1 3.0923 1.2756 2.5892 47 1 1.4533 2.0402 2.7850 48 1 1.1734 -1.4323 4.2060 49 1 2.8872 -1.2579 3.6245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295317530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:39 Heat of formation + Delta-G solvation = 2.808267 kcal Electronic energy + Delta-G solvation = -30117.304500 eV Core-core repulsion = 26239.543025 eV Total energy + Delta-G solvation = -3877.761474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.83700 -39.81732 -38.26247 -37.00675 -34.76255 -32.75177 -31.96249 -30.75432 -29.51570 -29.18869 -27.50339 -27.22928 -26.40981 -25.44025 -22.89044 -22.43919 -22.04067 -21.31745 -19.53751 -18.89033 -17.08282 -16.95484 -16.58521 -16.48365 -16.05022 -15.90741 -15.25478 -15.01181 -14.79404 -14.49836 -14.25024 -14.18324 -13.70837 -13.53303 -13.25547 -13.18944 -12.85220 -12.67872 -12.48898 -12.29506 -12.14189 -11.98106 -11.55075 -11.52967 -11.34472 -11.22411 -11.18456 -11.02137 -10.89136 -10.85720 -10.63315 -10.47888 -10.18462 -9.79158 -9.74663 -9.25918 -8.75514 -8.64795 -8.45135 -8.21331 -7.67779 -6.06991 -4.11347 1.52014 1.59152 3.27691 3.30575 3.34598 3.38063 3.45972 3.61884 3.96859 4.05521 4.12133 4.42825 4.81225 4.86506 5.00682 5.04222 5.11400 5.12714 5.13395 5.27938 5.30416 5.30760 5.33256 5.35662 5.41192 5.43796 5.57741 5.63510 5.68540 5.76196 5.77220 5.82669 5.92294 5.98222 6.02152 6.03528 6.20778 6.22210 6.35946 6.55269 6.68017 6.76744 6.86164 7.02116 7.08896 7.16670 7.34983 7.47561 7.88192 8.17433 8.35525 8.85202 9.01188 9.53050 11.01343 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010004 B = 0.004509 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.327310 B = 6208.919148 C = 7669.613293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.074 3.926 3 C -0.142 4.142 4 N -0.502 5.502 5 C 0.031 3.969 6 C 0.513 3.487 7 O -0.503 6.503 8 N -0.566 5.566 9 C 0.251 3.749 10 C -0.524 4.524 11 H 0.056 0.944 12 C 0.063 3.937 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.165 3.835 19 C -0.125 4.125 20 C -0.111 4.111 21 C -0.135 4.135 22 C -0.109 4.109 23 C -0.126 4.126 24 C 0.006 3.994 25 C 0.052 3.948 26 O -0.385 6.385 27 C 0.042 3.958 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.034 0.966 39 H 0.264 0.736 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.976 6.329 11.892 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.034 4.034 3 C -0.200 4.200 4 N -0.227 5.227 5 C -0.100 4.100 6 C 0.300 3.700 7 O -0.377 6.377 8 N -0.296 5.296 9 C 0.134 3.866 10 C -0.562 4.562 11 H 0.074 0.926 12 C -0.139 4.139 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.203 1.203 18 C 0.073 3.927 19 C -0.145 4.145 20 C -0.130 4.130 21 C -0.153 4.153 22 C -0.128 4.128 23 C -0.145 4.145 24 C -0.102 4.102 25 C -0.025 4.025 26 O -0.304 6.304 27 C -0.035 4.035 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.100 0.900 46 H 0.112 0.888 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.750 6.840 11.845 18.032 hybrid contribution -1.170 -0.456 -1.473 1.936 sum -12.921 6.385 10.372 17.756 Atomic orbital electron populations 1.22505 0.97933 1.01799 1.02357 1.21758 0.91959 0.96001 0.93650 1.21879 1.02501 0.94483 1.01112 1.62208 1.56970 1.01919 1.01640 1.22083 0.98236 0.89048 1.00615 1.20178 0.86355 0.81544 0.81958 1.90696 1.35263 1.58899 1.52809 1.46006 1.24126 1.08679 1.50764 1.19389 0.85512 0.93179 0.88566 1.21295 1.06407 1.37766 0.90772 0.92593 1.24893 0.94773 0.95037 0.99191 1.69910 1.11277 1.38374 1.33760 0.86570 0.78046 0.78443 0.84459 1.20155 1.21113 1.20273 1.17750 0.87731 0.93635 0.93579 1.21359 0.92459 1.01173 0.99524 1.20966 0.98407 0.95991 0.97591 1.21054 0.96985 0.98597 0.98654 1.20978 0.92554 0.99157 1.00080 1.21352 0.99597 0.96664 0.96917 1.25150 0.98484 0.96186 0.90407 1.24215 1.01497 0.95722 0.81075 1.89711 1.95091 1.18599 1.26957 1.24076 1.01738 0.86555 0.91106 0.92471 0.91782 0.92595 0.88800 0.91345 0.92438 0.92836 0.91533 0.88662 0.93543 0.94833 0.92616 0.86161 0.86250 0.86415 0.86092 0.85744 0.90048 0.88847 0.89438 0.89386 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 8.36 37.16 0.31 -1.72 16 2 C 0.07 1.00 2.62 -67.71 -0.18 0.82 16 3 C -0.14 -1.65 8.67 37.16 0.32 -1.33 16 4 N -0.50 -6.95 3.98 -228.02 -0.91 -7.85 16 5 C 0.03 0.46 4.19 -4.98 -0.02 0.44 16 6 C 0.51 10.33 7.09 -10.99 -0.08 10.25 16 7 O -0.50 -12.18 15.15 5.55 0.08 -12.09 16 8 N -0.57 -11.83 2.50 -114.73 -0.29 -12.12 16 9 C 0.25 6.48 5.08 -5.19 -0.03 6.46 16 10 C -0.52 -14.69 9.39 -34.44 -0.32 -15.02 16 11 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 12 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 13 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 14 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.17 2.89 4.42 -83.69 -0.37 2.52 16 19 C -0.13 -1.94 8.30 -39.39 -0.33 -2.27 16 20 C -0.11 -1.40 10.04 -39.61 -0.40 -1.80 16 21 C -0.13 -1.58 10.04 -39.55 -0.40 -1.98 16 22 C -0.11 -1.37 10.04 -39.61 -0.40 -1.77 16 23 C -0.13 -1.93 9.72 -39.39 -0.38 -2.31 16 24 C 0.01 0.07 2.83 -66.63 -0.19 -0.12 16 25 C 0.05 0.57 6.66 37.64 0.25 0.82 16 26 O -0.39 -4.91 12.46 -35.23 -0.44 -5.35 16 27 C 0.04 0.47 7.53 37.64 0.28 0.76 16 28 H 0.06 0.54 6.52 -51.93 -0.34 0.20 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.62 6.38 -51.93 -0.33 0.29 16 31 H 0.09 1.60 6.89 -51.93 -0.36 1.24 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.52 5.15 -51.93 -0.27 0.25 16 35 H 0.07 0.92 4.63 -51.93 -0.24 0.68 16 36 H 0.10 1.27 6.66 -51.93 -0.35 0.93 16 37 H 0.05 1.34 7.49 -51.93 -0.39 0.95 16 38 H 0.03 0.89 7.88 -51.93 -0.41 0.48 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.12 1.89 8.00 -52.49 -0.42 1.47 16 41 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 44 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 45 H 0.08 0.84 6.06 -51.93 -0.31 0.53 16 46 H 0.09 1.08 8.06 -51.93 -0.42 0.66 16 47 H 0.09 0.79 7.36 -51.93 -0.38 0.40 16 48 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -32.41 388.71 -9.55 -41.96 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.56 Total: 3.00 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.02 Total: -4.56 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.46 Total: -45.63 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.35 Total: -17.44 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.41 -9.55 -41.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295317530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.771 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds