Wall clock time and date at job start Tue Mar 31 2020 16:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47260 * 2 1 4 4 N 1.46899 * 109.46730 * 120.00295 * 2 1 3 5 5 C 1.46894 * 111.00477 * 71.96904 * 4 2 1 6 6 C 1.50702 * 109.47108 * 75.84085 * 5 4 2 7 7 O 1.21293 * 119.99946 * 5.21831 * 6 5 4 8 8 N 1.34770 * 120.00364 * 185.21370 * 6 5 4 9 9 C 1.46502 * 120.00354 * 184.50348 * 8 6 5 10 10 C 1.50702 * 109.47185 * 270.00291 * 9 8 6 11 11 H 1.08001 * 119.99971 * 0.02562 * 10 9 8 12 12 C 1.37871 * 119.99850 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00164 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00222 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47126 * 59.99648 * 14 12 10 16 16 H 1.48496 * 109.47573 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46933 * 300.00213 * 14 12 10 18 18 C 1.39927 * 119.99913 * 4.50785 * 8 6 5 19 19 C 1.38873 * 120.07024 * 68.70040 * 18 8 6 20 20 C 1.38110 * 119.92863 * 180.23369 * 19 18 8 21 21 C 1.38281 * 120.07276 * 359.47294 * 20 19 18 22 22 C 1.38285 * 120.13742 * 0.55042 * 21 20 19 23 23 C 1.38114 * 120.07188 * 359.70698 * 22 21 20 24 24 C 1.46900 * 111.00166 * 308.01001 * 4 2 1 25 25 C 1.54039 * 113.81971 * 278.51495 * 24 4 2 26 26 O 1.44449 * 85.42242 * 223.23145 * 25 24 4 27 27 C 1.44179 * 93.38116 * 24.08832 * 26 25 24 28 28 H 1.09004 * 109.47418 * 306.33765 * 1 2 3 29 29 H 1.09000 * 109.47249 * 66.34117 * 1 2 3 30 30 H 1.09005 * 109.47320 * 186.34019 * 1 2 3 31 31 H 1.08999 * 109.46625 * 239.99737 * 2 1 3 32 32 H 1.08992 * 109.47131 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46690 * 299.99993 * 3 2 1 34 34 H 1.08998 * 109.46831 * 59.99652 * 3 2 1 35 35 H 1.08997 * 109.47158 * 315.84062 * 5 4 2 36 36 H 1.09003 * 109.46987 * 195.83485 * 5 4 2 37 37 H 1.08998 * 109.46997 * 30.00497 * 9 8 6 38 38 H 1.09005 * 109.47206 * 150.00341 * 9 8 6 39 39 H 0.97000 * 120.00380 * 180.02562 * 13 12 10 40 40 H 1.08001 * 120.03589 * 359.96283 * 19 18 8 41 41 H 1.08005 * 119.96153 * 179.72757 * 20 19 18 42 42 H 1.07993 * 119.93293 * 180.25470 * 21 20 19 43 43 H 1.08003 * 119.96422 * 179.72348 * 22 21 20 44 44 H 1.08003 * 120.03827 * 180.02562 * 23 22 21 45 45 H 1.09003 * 112.99534 * 50.34124 * 24 4 2 46 46 H 1.08994 * 113.86370 * 337.33869 * 25 24 4 47 47 H 1.09004 * 113.86099 * 109.04354 * 25 24 4 48 48 H 1.08997 * 113.86310 * 221.76172 * 27 26 25 49 49 H 1.09002 * 113.98392 * 90.07076 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.7949 -2.1408 1.0998 6 6 2.8086 -2.7431 0.1614 7 8 3.6946 -2.0536 -0.2979 8 7 2.7310 -4.0477 -0.1675 9 6 3.7714 -4.6566 -0.9999 10 6 3.3922 -4.5272 -2.4527 11 1 2.4687 -4.0398 -2.7284 12 6 4.2241 -5.0311 -3.4298 13 7 5.3489 -5.6242 -3.0942 14 14 3.7545 -4.8702 -5.2306 15 1 3.6193 -3.4333 -5.5805 16 1 4.8085 -5.4886 -6.0744 17 1 2.4618 -5.5613 -5.4687 18 6 1.6564 -4.8208 0.2861 19 6 0.3776 -4.5900 -0.2037 20 6 -0.6817 -5.3516 0.2496 21 6 -0.4682 -6.3502 1.1820 22 6 0.8040 -6.5822 1.6720 23 6 1.8666 -5.8206 1.2267 24 6 1.3988 -0.1458 2.4133 25 6 2.0629 1.1472 2.9234 26 8 1.9438 0.5536 4.2349 27 6 1.9065 -0.7912 3.7165 28 1 -0.3634 0.6089 0.8278 29 1 -0.3634 0.4124 -0.9413 30 1 -0.3634 -1.0214 0.1135 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 0.7910 -2.3273 0.7184 36 1 1.8989 -2.5933 2.0860 37 1 4.7199 -4.1486 -0.8254 38 1 3.8714 -5.7112 -0.7431 39 1 5.9345 -5.9784 -3.7816 40 1 0.2108 -3.8130 -0.9350 41 1 -1.6772 -5.1696 -0.1276 42 1 -1.2975 -6.9470 1.5318 43 1 0.9668 -7.3599 2.4035 44 1 2.8600 -6.0025 1.6094 45 1 0.3125 -0.0857 2.3461 46 1 3.0923 1.2756 2.5892 47 1 1.4533 2.0402 2.7850 48 1 1.1734 -1.4323 4.2060 49 1 2.8872 -1.2579 3.6245 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295317530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:38 Heat of formation + Delta-G solvation = -18.294951 kcal Electronic energy + Delta-G solvation = -30118.219604 eV Core-core repulsion = 26239.543025 eV Total energy + Delta-G solvation = -3878.676579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.90357 -41.11376 -39.51125 -38.16785 -36.40007 -34.80235 -33.08573 -31.84526 -30.97125 -30.29038 -29.05735 -28.22886 -27.30521 -26.86281 -24.69741 -23.64361 -23.29927 -22.31001 -20.68274 -20.13332 -18.72739 -18.38689 -17.87690 -17.76574 -17.10199 -17.03775 -16.86870 -16.38497 -16.08091 -15.78917 -15.51098 -15.36604 -14.89099 -14.79167 -14.45280 -14.37249 -14.27266 -13.93544 -13.63763 -13.58923 -13.39316 -13.19537 -13.07947 -12.91863 -12.67830 -12.56631 -12.45531 -12.34521 -12.14965 -12.12219 -12.09554 -11.79356 -11.74868 -11.50927 -10.86716 -10.68265 -10.64731 -10.05436 -9.83083 -9.39979 -9.13775 -8.25232 -6.39852 0.37785 0.50947 1.32695 1.36930 1.44177 1.74433 2.06792 2.36138 2.73016 2.83886 2.90942 3.04448 3.18705 3.61231 3.89209 4.01268 4.06222 4.13367 4.14202 4.17574 4.21263 4.31285 4.32990 4.39340 4.48452 4.53938 4.61089 4.66802 4.69033 4.71699 4.77325 4.87188 4.92962 5.00152 5.01755 5.06502 5.10776 5.14291 5.16359 5.26016 5.38850 5.43278 5.55199 5.63678 5.67406 5.78570 5.86697 6.00646 6.09026 6.10268 6.65829 6.77956 7.24790 7.43199 8.81726 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010004 B = 0.004509 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.327310 B = 6208.919148 C = 7669.613293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.072 3.928 3 C -0.136 4.136 4 N -0.521 5.521 5 C 0.053 3.947 6 C 0.505 3.495 7 O -0.559 6.559 8 N -0.568 5.568 9 C 0.270 3.730 10 C -0.538 4.538 11 H 0.049 0.951 12 C 0.010 3.990 13 N -0.927 5.927 14 Si 0.965 3.035 15 H -0.276 1.276 16 H -0.276 1.276 17 H -0.262 1.262 18 C 0.127 3.873 19 C -0.136 4.136 20 C -0.103 4.103 21 C -0.119 4.119 22 C -0.102 4.102 23 C -0.140 4.140 24 C 0.012 3.988 25 C 0.052 3.948 26 O -0.401 6.401 27 C 0.040 3.960 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.001 0.999 38 H 0.019 0.981 39 H 0.268 0.732 40 H 0.109 0.891 41 H 0.152 0.848 42 H 0.159 0.841 43 H 0.152 0.848 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.080 0.920 47 H 0.114 0.886 48 H 0.112 0.888 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.113 6.024 12.842 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.036 4.036 3 C -0.194 4.194 4 N -0.247 5.247 5 C -0.078 4.078 6 C 0.294 3.706 7 O -0.437 6.437 8 N -0.297 5.297 9 C 0.150 3.850 10 C -0.576 4.576 11 H 0.068 0.932 12 C -0.189 4.189 13 N -0.567 5.567 14 Si 0.789 3.211 15 H -0.202 1.202 16 H -0.201 1.201 17 H -0.187 1.187 18 C 0.036 3.964 19 C -0.156 4.156 20 C -0.121 4.121 21 C -0.137 4.137 22 C -0.120 4.120 23 C -0.160 4.160 24 C -0.096 4.096 25 C -0.025 4.025 26 O -0.319 6.319 27 C -0.036 4.036 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.019 0.981 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.127 0.873 41 H 0.170 0.830 42 H 0.177 0.823 43 H 0.170 0.830 44 H 0.131 0.869 45 H 0.121 0.879 46 H 0.098 0.902 47 H 0.132 0.868 48 H 0.130 0.870 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.934 6.520 12.829 21.471 hybrid contribution 0.111 -0.422 -1.691 1.746 sum -15.823 6.099 11.138 20.288 Atomic orbital electron populations 1.22411 0.95351 1.02198 1.03683 1.21694 0.93973 0.96177 0.91742 1.21836 1.00947 0.93760 1.02836 1.62121 1.58402 1.01291 1.02877 1.21861 0.96649 0.89664 0.99605 1.21211 0.86584 0.80964 0.81837 1.90651 1.37779 1.60185 1.55050 1.45821 1.24199 1.09448 1.50216 1.18760 0.85521 0.91832 0.88920 1.21536 1.06277 1.37719 0.92088 0.93245 1.25810 0.94602 0.94497 1.03961 1.70034 1.12253 1.39071 1.35325 0.85508 0.78504 0.78377 0.78701 1.20195 1.20078 1.18665 1.18007 0.87371 0.95141 0.95882 1.21355 0.92486 1.01914 0.99849 1.21326 0.98771 0.95017 0.96995 1.21545 0.97612 0.97647 0.96883 1.21337 0.92021 0.98738 0.99931 1.21413 1.00387 0.96952 0.97252 1.25226 0.99407 0.96183 0.88816 1.24300 1.01332 0.96570 0.80266 1.89699 1.95097 1.19298 1.27829 1.24153 1.01717 0.86468 0.91297 0.90169 0.91150 0.92817 0.93550 0.93789 0.91305 0.90396 0.89991 0.87010 0.98064 0.96339 0.92340 0.87299 0.83036 0.82328 0.83011 0.86868 0.87914 0.90197 0.86801 0.86951 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.53 8.36 71.98 0.60 -2.93 16 2 C 0.07 1.97 2.62 44.92 0.12 2.09 16 3 C -0.14 -3.15 8.67 71.98 0.62 -2.53 16 4 N -0.52 -14.56 3.98 -886.34 -3.52 -18.09 16 5 C 0.05 1.60 4.19 85.56 0.36 1.96 16 6 C 0.51 21.85 7.09 87.66 0.62 22.47 16 7 O -0.56 -29.62 15.15 -3.07 -0.05 -29.67 16 8 N -0.57 -25.44 2.50 -635.29 -1.59 -27.03 16 9 C 0.27 15.07 5.08 85.63 0.43 15.51 16 10 C -0.54 -31.81 9.39 25.60 0.24 -31.57 16 11 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 12 C 0.01 0.61 5.46 84.65 0.46 1.07 16 13 N -0.93 -56.98 13.29 21.44 0.28 -56.70 16 14 Si 0.97 45.72 29.54 68.60 2.03 47.74 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 18 C 0.13 4.53 4.42 38.15 0.17 4.70 16 19 C -0.14 -4.12 8.30 22.39 0.19 -3.94 16 20 C -0.10 -2.23 10.04 22.25 0.22 -2.01 16 21 C -0.12 -2.24 10.04 22.29 0.22 -2.02 16 22 C -0.10 -2.25 10.04 22.25 0.22 -2.03 16 23 C -0.14 -4.31 9.72 22.39 0.22 -4.09 16 24 C 0.01 0.24 2.83 45.62 0.13 0.37 16 25 C 0.05 1.05 6.66 72.30 0.48 1.53 16 26 O -0.40 -9.53 12.46 -148.98 -1.86 -11.39 16 27 C 0.04 0.85 7.53 72.30 0.54 1.39 16 28 H 0.08 1.23 6.52 -2.38 -0.02 1.21 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.09 6.38 -2.38 -0.02 1.07 16 31 H 0.05 1.70 6.89 -2.39 -0.02 1.69 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.38 5.15 -2.39 -0.01 1.37 16 35 H 0.08 2.23 4.63 -2.39 -0.01 2.22 16 36 H 0.11 2.97 6.66 -2.39 -0.02 2.96 16 37 H 0.00 0.08 7.49 -2.39 -0.02 0.06 16 38 H 0.02 1.07 7.88 -2.38 -0.02 1.05 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.11 3.46 8.00 -2.91 -0.02 3.44 16 41 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 42 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 43 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 44 H 0.11 3.61 8.06 -2.91 -0.02 3.58 16 45 H 0.10 1.74 6.06 -2.39 -0.01 1.73 16 46 H 0.08 1.84 8.06 -2.39 -0.02 1.82 16 47 H 0.11 1.70 7.36 -2.38 -0.02 1.68 16 48 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.08 1.80 8.05 -2.39 -0.02 1.78 16 Total: -1.00 -77.10 388.71 2.09 -75.01 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.94 Total: 20.14 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.86 Total: -0.02 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -4.83 Total: -101.81 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -1.90 Total: -41.06 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -77.10 2.09 -75.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295317530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.712 kcal (2) G-P(sol) polarization free energy of solvation -77.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds