Wall clock time and date at job start Tue Mar 31 2020 16:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 N 1.46507 * 109.47150 * 180.02562 * 3 2 1 5 5 C 1.37090 * 120.00154 * 264.54210 * 4 3 2 6 6 H 1.07995 * 120.00198 * 146.01034 * 5 4 3 7 7 C 1.38955 * 119.99845 * 326.01596 * 5 4 3 8 8 N 1.31406 * 120.00057 * 337.80184 * 7 5 4 9 9 Si 1.86801 * 119.99768 * 157.80637 * 7 5 4 10 10 H 1.48501 * 109.47074 * 89.99747 * 9 7 5 11 11 H 1.48502 * 109.46846 * 209.99572 * 9 7 5 12 12 H 1.48500 * 109.47540 * 329.99626 * 9 7 5 13 13 C 1.34780 * 119.99749 * 84.53845 * 4 3 2 14 14 O 1.21289 * 120.00206 * 0.02562 * 13 4 3 15 15 C 1.50698 * 119.99779 * 180.02562 * 13 4 3 16 16 N 1.46504 * 109.47163 * 180.02562 * 15 13 4 17 17 C 1.34769 * 119.99643 * 180.02562 * 16 15 13 18 18 O 1.21279 * 120.00748 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99469 * 180.02562 * 17 16 15 20 20 C 1.53005 * 109.47036 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.46930 * 179.97438 * 20 19 17 22 22 C 1.38236 * 119.99969 * 90.00141 * 21 20 19 23 23 C 1.38230 * 120.00358 * 179.72120 * 22 21 20 24 24 C 1.38240 * 119.99565 * 0.26015 * 23 22 21 25 25 C 1.50703 * 119.99810 * 179.97438 * 24 23 22 26 26 C 1.38236 * 119.99994 * 0.02562 * 24 23 22 27 27 C 1.38226 * 120.00163 * 359.96295 * 26 24 23 28 28 H 1.09001 * 109.46889 * 299.99744 * 1 2 3 29 29 H 1.08994 * 109.47420 * 59.99306 * 1 2 3 30 30 H 1.08991 * 109.47417 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46417 * 240.00475 * 2 1 3 32 32 H 1.08996 * 109.47121 * 120.00243 * 2 1 3 33 33 H 1.09001 * 109.47010 * 60.00329 * 3 2 1 34 34 H 1.08996 * 109.47302 * 300.00133 * 3 2 1 35 35 H 0.97001 * 119.99977 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.46897 * 60.00206 * 15 13 4 37 37 H 1.08999 * 109.47370 * 300.00197 * 15 13 4 38 38 H 0.97000 * 119.99412 * 0.02562 * 16 15 13 39 39 H 1.08995 * 109.47537 * 59.99704 * 19 17 16 40 40 H 1.09004 * 109.47197 * 299.99411 * 19 17 16 41 41 H 1.08997 * 109.47258 * 60.00093 * 20 19 17 42 42 H 1.08999 * 109.47198 * 299.99626 * 20 19 17 43 43 H 1.08004 * 120.00085 * 359.97438 * 22 21 20 44 44 H 1.07994 * 120.00679 * 180.27210 * 23 22 21 45 45 H 1.09001 * 109.47372 * 89.99882 * 25 24 23 46 46 H 1.08997 * 109.46971 * 209.99545 * 25 24 23 47 47 H 1.08997 * 109.47150 * 329.99680 * 25 24 23 48 48 H 1.07998 * 119.99463 * 179.97438 * 26 24 23 49 49 H 1.08002 * 120.00184 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1911 1.5552 1.1809 6 1 5.1327 1.0423 1.3098 7 6 3.6747 2.3294 2.2129 8 7 2.8038 3.2777 1.9505 9 14 4.2188 2.0219 3.9733 10 1 5.4093 2.8562 4.2763 11 1 3.1157 2.3779 4.9016 12 1 4.5638 0.5874 4.1415 13 6 4.1784 1.3315 -1.1629 14 8 3.5715 1.2322 -2.2083 15 6 5.6854 1.3310 -1.1635 16 7 6.1732 1.2004 -2.5387 17 6 7.4981 1.1762 -2.7843 18 8 8.2866 1.2628 -1.8669 19 6 7.9998 1.0425 -4.1991 20 6 9.5299 1.0418 -4.1997 21 6 10.0315 0.9074 -5.6144 22 6 10.2622 2.0377 -6.3761 23 6 10.7278 1.9147 -7.6718 24 6 10.9577 0.6613 -8.2076 25 6 11.4648 0.5272 -9.6204 26 6 10.7215 -0.4691 -7.4478 27 6 10.2561 -0.3461 -6.1521 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 2.4437 3.8184 2.6708 36 1 6.0486 0.4936 -0.5678 37 1 6.0493 2.2655 -0.7364 38 1 5.5425 1.1315 -3.2725 39 1 7.6370 1.8806 -4.7940 40 1 7.6356 0.1085 -4.6270 41 1 9.8930 0.2038 -3.6047 42 1 9.8938 1.9759 -3.7719 43 1 10.0824 3.0170 -5.9576 44 1 10.9122 2.7978 -8.2655 45 1 12.5548 0.5251 -9.6166 46 1 11.1013 -0.4064 -10.0498 47 1 11.1052 1.3657 -10.2166 48 1 10.9007 -1.4483 -7.8666 49 1 10.0719 -1.2293 -5.5583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299554526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:28 Heat of formation + Delta-G solvation = -71.531195 kcal Electronic energy + Delta-G solvation = -27340.387696 eV Core-core repulsion = 23459.402621 eV Total energy + Delta-G solvation = -3880.985075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -39.87164 -39.32672 -38.44483 -35.42017 -34.69384 -33.78982 -32.85954 -31.50663 -31.32772 -31.09017 -28.22535 -26.78059 -25.61140 -24.35104 -23.25330 -22.88615 -20.92977 -20.67167 -19.94097 -19.24678 -17.62242 -16.74788 -16.04572 -15.98741 -15.58828 -15.34640 -15.20753 -15.09901 -14.67558 -14.32179 -14.19972 -14.01386 -13.79802 -13.59218 -13.41348 -13.17916 -12.84240 -12.64743 -12.54083 -12.40137 -12.28351 -11.81764 -11.67442 -11.58382 -11.41467 -11.32163 -11.23441 -11.14766 -11.01558 -10.89487 -10.71247 -10.42209 -10.35329 -9.81506 -9.60461 -9.19609 -9.09061 -8.64930 -8.62955 -8.61235 -7.65587 -6.49104 -4.16175 1.14573 1.23850 2.95778 3.06792 3.17916 3.22140 3.43325 3.64268 3.73713 4.05009 4.58302 4.61162 4.70293 4.79765 4.85014 4.89329 4.95901 5.02441 5.19009 5.26166 5.29386 5.36689 5.49691 5.53981 5.61342 5.72818 5.75725 5.76644 5.89806 5.90355 5.96649 6.13364 6.14148 6.16863 6.25692 6.33170 6.40604 6.43944 6.49313 6.52496 6.62284 6.76554 6.80420 6.85507 7.04304 7.28606 7.40778 7.77811 7.94470 8.25316 8.57924 8.94580 9.34969 9.77537 10.51980 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018422 B = 0.002018 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.546005 B =13873.482284 C =14826.201048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.115 3.885 4 N -0.426 5.426 5 C -0.349 4.349 6 H 0.094 0.906 7 C 0.047 3.953 8 N -0.853 5.853 9 Si 0.914 3.086 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.456 3.544 14 O -0.609 6.609 15 C 0.119 3.881 16 N -0.713 5.713 17 C 0.508 3.492 18 O -0.550 6.550 19 C -0.132 4.132 20 C -0.065 4.065 21 C -0.083 4.083 22 C -0.112 4.112 23 C -0.119 4.119 24 C -0.096 4.096 25 C -0.113 4.113 26 C -0.120 4.120 27 C -0.112 4.112 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.053 0.947 35 H 0.272 0.728 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.408 0.592 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.120 0.880 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.628 -4.695 -14.928 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.143 5.143 5 C -0.476 4.476 6 H 0.111 0.889 7 C -0.160 4.160 8 N -0.489 5.489 9 Si 0.740 3.260 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.245 3.755 14 O -0.497 6.497 15 C -0.008 4.008 16 N -0.366 5.366 17 C 0.294 3.706 18 O -0.428 6.428 19 C -0.173 4.173 20 C -0.102 4.102 21 C -0.083 4.083 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.096 4.096 25 C -0.170 4.170 26 C -0.138 4.138 27 C -0.130 4.130 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.245 0.755 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.138 0.862 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.723 -4.515 -14.624 18.688 hybrid contribution -0.156 -0.071 0.713 0.734 sum 10.567 -4.587 -13.910 18.061 Atomic orbital electron populations 1.21648 0.96482 1.00491 1.01426 1.21834 0.94818 0.99320 1.01370 1.21496 0.80946 0.94678 1.03765 1.43432 1.05031 1.61062 1.04767 1.19490 1.07678 1.29956 0.90522 0.88861 1.25345 0.96711 0.93306 1.00642 1.69939 1.29664 1.15834 1.33438 0.86137 0.78536 0.79337 0.81979 1.20013 1.20622 1.19171 1.20236 0.88915 0.82243 0.84152 1.90496 1.69841 1.57643 1.31713 1.20890 0.93482 1.03744 0.82674 1.45877 1.07013 1.73534 1.10224 1.20572 0.82189 0.76538 0.91263 1.90691 1.55346 1.50254 1.46519 1.21619 0.96588 1.04578 0.94472 1.20336 0.93409 1.04491 0.92013 1.19958 0.99052 0.93198 0.96127 1.21097 0.99357 0.98426 0.94142 1.21018 1.00281 0.96808 0.95642 1.19916 0.99878 0.93347 0.96433 1.20778 1.01043 1.02576 0.92617 1.21012 1.00307 0.98035 0.94417 1.21086 0.99434 0.97105 0.95422 0.92969 0.93114 0.93585 0.92836 0.92315 0.87380 0.92883 0.91807 0.89850 0.88943 0.75513 0.88862 0.88907 0.90134 0.90089 0.85920 0.86227 0.91349 0.91655 0.91645 0.86244 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.91 37.16 0.37 -1.97 16 2 C -0.13 -2.70 6.22 -26.73 -0.17 -2.86 16 3 C 0.11 2.66 4.90 -4.04 -0.02 2.64 16 4 N -0.43 -10.43 2.56 -114.81 -0.29 -10.72 16 5 C -0.35 -8.63 8.70 -14.93 -0.13 -8.76 16 6 H 0.09 2.23 6.97 -52.49 -0.37 1.86 16 7 C 0.05 1.15 4.92 -17.47 -0.09 1.07 16 8 N -0.85 -21.86 11.34 55.50 0.63 -21.23 16 9 Si 0.91 19.09 29.61 -169.99 -5.03 14.06 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 12 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 13 C 0.46 10.71 7.67 -10.98 -0.08 10.62 16 14 O -0.61 -14.99 15.34 5.55 0.09 -14.90 16 15 C 0.12 2.44 4.81 -5.19 -0.02 2.42 16 16 N -0.71 -12.54 5.53 -61.47 -0.34 -12.88 16 17 C 0.51 8.29 7.83 -10.99 -0.09 8.21 16 18 O -0.55 -10.81 15.98 5.56 0.09 -10.72 16 19 C -0.13 -1.56 5.68 -27.88 -0.16 -1.72 16 20 C -0.06 -0.74 4.63 -27.88 -0.13 -0.87 16 21 C -0.08 -0.87 5.13 -104.62 -0.54 -1.41 16 22 C -0.11 -1.11 9.70 -39.59 -0.38 -1.49 16 23 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 24 C -0.10 -0.84 5.88 -104.62 -0.62 -1.46 16 25 C -0.11 -0.71 10.01 36.01 0.36 -0.35 16 26 C -0.12 -1.08 9.70 -39.59 -0.38 -1.46 16 27 C -0.11 -1.10 9.70 -39.59 -0.38 -1.49 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.11 2.66 5.35 -51.93 -0.28 2.38 16 34 H 0.05 1.28 7.59 -51.93 -0.39 0.88 16 35 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 36 H 0.08 1.71 7.64 -51.93 -0.40 1.31 16 37 H 0.09 2.01 8.10 -51.93 -0.42 1.59 16 38 H 0.41 6.83 7.44 -40.82 -0.30 6.53 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 42 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 43 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 47 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 48 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 49 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 407.80 15.07 6.15 6.15 Total: -1.00 -29.49 407.80 -9.60 -39.09 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -8.04 Total: 11.52 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.84 Total: -0.36 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.00 Total: -44.83 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: 0.17 Total: -25.62 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -29.49 -9.60 -39.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299554526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.439 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds