Wall clock time and date at job start Tue Mar 31 2020 16:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 N 1.46507 * 109.47150 * 180.02562 * 3 2 1 5 5 C 1.37090 * 120.00154 * 264.54210 * 4 3 2 6 6 H 1.07995 * 120.00198 * 146.01034 * 5 4 3 7 7 C 1.38955 * 119.99845 * 326.01596 * 5 4 3 8 8 N 1.31406 * 120.00057 * 337.80184 * 7 5 4 9 9 Si 1.86801 * 119.99768 * 157.80637 * 7 5 4 10 10 H 1.48501 * 109.47074 * 89.99747 * 9 7 5 11 11 H 1.48502 * 109.46846 * 209.99572 * 9 7 5 12 12 H 1.48500 * 109.47540 * 329.99626 * 9 7 5 13 13 C 1.34780 * 119.99749 * 84.53845 * 4 3 2 14 14 O 1.21289 * 120.00206 * 0.02562 * 13 4 3 15 15 C 1.50698 * 119.99779 * 180.02562 * 13 4 3 16 16 N 1.46504 * 109.47163 * 180.02562 * 15 13 4 17 17 C 1.34769 * 119.99643 * 180.02562 * 16 15 13 18 18 O 1.21279 * 120.00748 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99469 * 180.02562 * 17 16 15 20 20 C 1.53005 * 109.47036 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.46930 * 179.97438 * 20 19 17 22 22 C 1.38236 * 119.99969 * 90.00141 * 21 20 19 23 23 C 1.38230 * 120.00358 * 179.72120 * 22 21 20 24 24 C 1.38240 * 119.99565 * 0.26015 * 23 22 21 25 25 C 1.50703 * 119.99810 * 179.97438 * 24 23 22 26 26 C 1.38236 * 119.99994 * 0.02562 * 24 23 22 27 27 C 1.38226 * 120.00163 * 359.96295 * 26 24 23 28 28 H 1.09001 * 109.46889 * 299.99744 * 1 2 3 29 29 H 1.08994 * 109.47420 * 59.99306 * 1 2 3 30 30 H 1.08991 * 109.47417 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46417 * 240.00475 * 2 1 3 32 32 H 1.08996 * 109.47121 * 120.00243 * 2 1 3 33 33 H 1.09001 * 109.47010 * 60.00329 * 3 2 1 34 34 H 1.08996 * 109.47302 * 300.00133 * 3 2 1 35 35 H 0.97001 * 119.99977 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.46897 * 60.00206 * 15 13 4 37 37 H 1.08999 * 109.47370 * 300.00197 * 15 13 4 38 38 H 0.97000 * 119.99412 * 0.02562 * 16 15 13 39 39 H 1.08995 * 109.47537 * 59.99704 * 19 17 16 40 40 H 1.09004 * 109.47197 * 299.99411 * 19 17 16 41 41 H 1.08997 * 109.47258 * 60.00093 * 20 19 17 42 42 H 1.08999 * 109.47198 * 299.99626 * 20 19 17 43 43 H 1.08004 * 120.00085 * 359.97438 * 22 21 20 44 44 H 1.07994 * 120.00679 * 180.27210 * 23 22 21 45 45 H 1.09001 * 109.47372 * 89.99882 * 25 24 23 46 46 H 1.08997 * 109.46971 * 209.99545 * 25 24 23 47 47 H 1.08997 * 109.47150 * 329.99680 * 25 24 23 48 48 H 1.07998 * 119.99463 * 179.97438 * 26 24 23 49 49 H 1.08002 * 120.00184 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1911 1.5552 1.1809 6 1 5.1327 1.0423 1.3098 7 6 3.6747 2.3294 2.2129 8 7 2.8038 3.2777 1.9505 9 14 4.2188 2.0219 3.9733 10 1 5.4093 2.8562 4.2763 11 1 3.1157 2.3779 4.9016 12 1 4.5638 0.5874 4.1415 13 6 4.1784 1.3315 -1.1629 14 8 3.5715 1.2322 -2.2083 15 6 5.6854 1.3310 -1.1635 16 7 6.1732 1.2004 -2.5387 17 6 7.4981 1.1762 -2.7843 18 8 8.2866 1.2628 -1.8669 19 6 7.9998 1.0425 -4.1991 20 6 9.5299 1.0418 -4.1997 21 6 10.0315 0.9074 -5.6144 22 6 10.2622 2.0377 -6.3761 23 6 10.7278 1.9147 -7.6718 24 6 10.9577 0.6613 -8.2076 25 6 11.4648 0.5272 -9.6204 26 6 10.7215 -0.4691 -7.4478 27 6 10.2561 -0.3461 -6.1521 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 2.4437 3.8184 2.6708 36 1 6.0486 0.4936 -0.5678 37 1 6.0493 2.2655 -0.7364 38 1 5.5425 1.1315 -3.2725 39 1 7.6370 1.8806 -4.7940 40 1 7.6356 0.1085 -4.6270 41 1 9.8930 0.2038 -3.6047 42 1 9.8938 1.9759 -3.7719 43 1 10.0824 3.0170 -5.9576 44 1 10.9122 2.7978 -8.2655 45 1 12.5548 0.5251 -9.6166 46 1 11.1013 -0.4064 -10.0498 47 1 11.1052 1.3657 -10.2166 48 1 10.9007 -1.4483 -7.8666 49 1 10.0719 -1.2293 -5.5583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299554526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:27 Heat of formation + Delta-G solvation = -86.365498 kcal Electronic energy + Delta-G solvation = -27341.030960 eV Core-core repulsion = 23459.402621 eV Total energy + Delta-G solvation = -3881.628339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.16369 -40.45723 -39.96946 -37.22049 -35.60333 -35.32322 -34.52455 -33.29543 -32.23546 -31.77271 -29.57211 -27.88482 -27.30070 -25.92784 -24.27573 -23.57323 -22.47126 -21.59973 -21.26770 -21.06246 -19.21698 -18.27170 -17.41649 -17.13451 -16.98378 -16.68293 -16.46788 -16.23295 -16.01316 -15.81508 -15.70304 -15.37467 -14.84250 -14.57046 -14.54769 -14.24873 -14.10276 -13.96850 -13.62081 -13.43390 -13.32848 -13.30056 -13.19633 -12.98985 -12.91586 -12.62073 -12.42602 -12.40363 -12.11172 -12.08884 -12.00985 -11.88349 -11.68397 -11.53894 -11.07195 -10.97322 -10.51902 -10.15532 -9.78869 -9.56426 -9.34899 -8.37595 -6.11047 0.43153 0.54011 1.38413 1.47534 1.58532 1.62478 1.88201 2.07542 2.31857 2.85947 2.96181 3.02686 3.67016 3.92153 4.02232 4.06175 4.12430 4.18445 4.20802 4.21631 4.30013 4.35861 4.46848 4.53119 4.55035 4.58943 4.63169 4.69980 4.78223 4.84798 4.86490 4.96658 4.97367 4.99517 5.08752 5.16458 5.21881 5.25676 5.28780 5.34806 5.36951 5.43545 5.55536 5.55849 5.74839 5.77570 5.91341 6.17283 6.34081 6.56237 7.03150 7.20750 7.46763 7.88009 8.64314 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018422 B = 0.002018 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.546005 B =13873.482284 C =14826.201048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.115 3.885 4 N -0.438 5.438 5 C -0.365 4.365 6 H 0.097 0.903 7 C 0.009 3.991 8 N -0.883 5.883 9 Si 0.980 3.020 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.261 1.261 13 C 0.448 3.552 14 O -0.624 6.624 15 C 0.132 3.868 16 N -0.711 5.711 17 C 0.509 3.491 18 O -0.584 6.584 19 C -0.120 4.120 20 C -0.057 4.057 21 C -0.096 4.096 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.101 4.101 25 C -0.113 4.113 26 C -0.128 4.128 27 C -0.122 4.122 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.035 0.965 35 H 0.275 0.725 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.413 0.587 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.128 0.872 44 H 0.136 0.864 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.137 0.863 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.103 -5.623 -15.804 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C -0.008 4.008 4 N -0.155 5.155 5 C -0.493 4.493 6 H 0.115 0.885 7 C -0.195 4.195 8 N -0.519 5.519 9 Si 0.803 3.197 10 H -0.199 1.199 11 H -0.201 1.201 12 H -0.186 1.186 13 C 0.237 3.763 14 O -0.513 6.513 15 C 0.004 3.996 16 N -0.365 5.365 17 C 0.297 3.703 18 O -0.465 6.465 19 C -0.160 4.160 20 C -0.095 4.095 21 C -0.096 4.096 22 C -0.141 4.141 23 C -0.146 4.146 24 C -0.101 4.101 25 C -0.169 4.169 26 C -0.145 4.145 27 C -0.140 4.140 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.251 0.749 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.146 0.854 44 H 0.154 0.846 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.155 0.845 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.196 -5.450 -15.524 19.901 hybrid contribution -0.279 0.251 0.908 0.983 sum 10.917 -5.199 -14.616 18.969 Atomic orbital electron populations 1.21605 0.93541 1.02386 1.01800 1.21732 0.97352 0.96694 1.00625 1.21488 0.80678 0.96545 1.02107 1.43681 1.05616 1.61083 1.05121 1.19750 1.08184 1.30405 0.90912 0.88514 1.26143 0.96654 0.92710 1.04029 1.70021 1.30693 1.16545 1.34654 0.85143 0.78037 0.79292 0.77211 1.19943 1.20149 1.18553 1.20662 0.90036 0.81782 0.83774 1.90467 1.70516 1.58274 1.32068 1.20586 0.91493 1.02927 0.84560 1.45879 1.07779 1.73876 1.09006 1.21373 0.81149 0.74936 0.92793 1.90675 1.55978 1.51698 1.48150 1.21632 0.96810 1.06336 0.91210 1.20217 0.92975 1.03547 0.92780 1.19876 1.00334 0.93872 0.95526 1.21265 0.99602 0.98580 0.94668 1.21283 1.00024 0.97774 0.95522 1.20285 0.99073 0.93157 0.97606 1.20825 1.01518 1.03431 0.91140 1.21287 0.99967 0.99111 0.94183 1.21266 0.99547 0.97140 0.96041 0.92570 0.92796 0.90907 0.93837 0.92630 0.88711 0.94621 0.91489 0.89882 0.90381 0.74854 0.87079 0.86832 0.91001 0.91198 0.85375 0.84583 0.90521 0.90778 0.90841 0.84480 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 9.91 71.98 0.71 -3.54 16 2 C -0.13 -4.99 6.22 30.59 0.19 -4.80 16 3 C 0.12 5.45 4.90 86.38 0.42 5.87 16 4 N -0.44 -21.86 2.56 -635.54 -1.63 -23.48 16 5 C -0.37 -18.26 8.70 84.04 0.73 -17.53 16 6 H 0.10 4.67 6.97 -2.91 -0.02 4.65 16 7 C 0.01 0.44 4.92 84.93 0.42 0.86 16 8 N -0.88 -45.68 11.34 21.66 0.25 -45.43 16 9 Si 0.98 38.91 29.61 68.60 2.03 40.94 16 10 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 11 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 12 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 13 C 0.45 21.44 7.67 87.66 0.67 22.11 16 14 O -0.62 -31.11 15.34 -3.06 -0.05 -31.16 16 15 C 0.13 5.53 4.81 85.63 0.41 5.94 16 16 N -0.71 -25.04 5.53 -466.80 -2.58 -27.62 16 17 C 0.51 16.51 7.83 87.66 0.69 17.19 16 18 O -0.58 -23.24 15.98 -3.03 -0.05 -23.29 16 19 C -0.12 -2.70 5.68 29.85 0.17 -2.53 16 20 C -0.06 -1.28 4.63 29.85 0.14 -1.15 16 21 C -0.10 -1.92 5.13 -19.86 -0.10 -2.03 16 22 C -0.12 -2.31 9.70 22.27 0.22 -2.09 16 23 C -0.13 -2.13 9.70 22.27 0.22 -1.91 16 24 C -0.10 -1.59 5.88 -19.86 -0.12 -1.71 16 25 C -0.11 -1.15 10.01 71.24 0.71 -0.43 16 26 C -0.13 -2.08 9.70 22.27 0.22 -1.86 16 27 C -0.12 -2.24 9.70 22.27 0.22 -2.02 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.10 4.76 5.35 -2.39 -0.01 4.74 16 34 H 0.04 1.76 7.59 -2.39 -0.02 1.75 16 35 H 0.28 13.34 8.31 -92.71 -0.77 12.56 16 36 H 0.08 3.47 7.64 -2.39 -0.02 3.45 16 37 H 0.08 3.50 8.10 -2.39 -0.02 3.48 16 38 H 0.41 13.71 7.44 -92.71 -0.69 13.02 16 39 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.07 1.71 8.04 -2.39 -0.02 1.69 16 42 H 0.07 1.70 8.04 -2.39 -0.02 1.68 16 43 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16 47 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 48 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 49 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -63.45 407.80 4.13 -59.31 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: 0.25 Total: 40.36 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 5.91 Total: 10.37 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -3.96 Total: -96.53 kcal Atomic # 8 Polarization: -54.36 SS G_CDS: -0.10 Total: -54.45 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -63.45 4.13 -59.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299554526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.054 kcal (2) G-P(sol) polarization free energy of solvation -63.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds