Wall clock time and date at job start Tue Mar 31 2020 16:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47183 * 2 1 4 4 N 1.46899 * 109.47044 * 179.97438 * 3 2 1 5 5 C 1.46847 * 110.99862 * 170.00059 * 4 3 2 6 6 C 1.53044 * 109.51335 * 174.15436 * 5 4 3 7 7 C 1.53119 * 109.27589 * 59.18419 * 6 5 4 8 8 N 1.46505 * 109.51821 * 182.37494 * 7 6 5 9 9 S 1.65597 * 119.99903 * 215.00011 * 8 7 6 10 10 O 1.42095 * 104.27610 * 181.07425 * 9 8 7 11 11 O 1.42099 * 104.27626 * 308.92684 * 9 8 7 12 12 C 1.81395 * 104.44892 * 64.99984 * 9 8 7 13 13 C 1.53008 * 109.46948 * 179.97438 * 12 9 8 14 14 C 1.52999 * 109.46783 * 300.00277 * 13 12 9 15 15 C 1.52998 * 109.46826 * 59.99980 * 13 12 9 16 16 C 1.50699 * 109.46966 * 179.97438 * 13 12 9 17 17 H 1.07997 * 120.00238 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99490 * 179.97438 * 16 13 12 19 19 N 1.31507 * 120.00597 * 0.02562 * 18 16 13 20 20 Si 1.86809 * 119.99546 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47065 * 60.00256 * 20 18 16 22 22 H 1.48504 * 109.46698 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46882 * 299.99825 * 20 18 16 24 24 C 1.53120 * 109.16202 * 302.34077 * 7 6 5 25 25 C 1.46847 * 110.99299 * 45.79217 * 4 3 2 26 26 H 1.08997 * 109.47114 * 60.00499 * 1 2 3 27 27 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47300 * 300.00397 * 1 2 3 29 29 H 1.08999 * 109.47300 * 239.99603 * 2 1 3 30 30 H 1.09007 * 109.47157 * 119.99556 * 2 1 3 31 31 H 1.09002 * 109.46622 * 59.99826 * 3 2 1 32 32 H 1.08997 * 109.46688 * 299.99762 * 3 2 1 33 33 H 1.09002 * 109.46448 * 54.14158 * 5 4 3 34 34 H 1.08994 * 109.45958 * 294.16523 * 5 4 3 35 35 H 1.09000 * 109.49745 * 179.12223 * 6 5 4 36 36 H 1.08996 * 109.50070 * 299.23917 * 6 5 4 37 37 H 1.08993 * 109.52284 * 62.25342 * 7 6 5 38 38 H 0.97003 * 119.99754 * 35.00112 * 8 7 6 39 39 H 1.08998 * 109.47344 * 299.99738 * 12 9 8 40 40 H 1.08994 * 109.46946 * 60.00372 * 12 9 8 41 41 H 1.09001 * 109.47799 * 60.00388 * 14 13 12 42 42 H 1.09003 * 109.46652 * 180.02562 * 14 13 12 43 43 H 1.08994 * 109.47172 * 299.99382 * 14 13 12 44 44 H 1.08998 * 109.47305 * 60.00297 * 15 13 12 45 45 H 1.09003 * 109.46688 * 179.97438 * 15 13 12 46 46 H 1.08999 * 109.47104 * 299.99810 * 15 13 12 47 47 H 0.97001 * 120.00889 * 180.02562 * 19 18 16 48 48 H 1.08996 * 109.50328 * 177.59853 * 24 7 6 49 49 H 1.08996 * 109.50004 * 297.72216 * 24 7 6 50 50 H 1.09005 * 109.46836 * 65.83946 * 25 4 3 51 51 H 1.08995 * 109.45748 * 305.85482 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0354 2.7926 -0.2374 6 6 5.5582 2.7816 -0.0857 7 6 6.1592 1.7947 -1.0903 8 7 7.6122 1.7379 -0.9113 9 16 8.6005 1.5283 -2.2233 10 8 9.9106 1.4973 -1.6738 11 8 8.0598 0.3973 -2.8923 12 6 8.3613 3.0287 -3.2144 13 6 9.2327 2.9548 -4.4699 14 6 10.7034 2.8407 -4.0639 15 6 8.8349 1.7295 -5.2953 16 6 9.0335 4.2010 -5.2936 17 1 8.3538 4.9690 -4.9553 18 6 9.7198 4.3610 -6.4786 19 7 10.5479 3.4260 -6.8904 20 14 9.4734 5.9060 -7.4993 21 1 9.8590 7.0953 -6.6980 22 1 10.3200 5.8348 -8.7173 23 1 8.0460 6.0163 -7.8937 24 6 5.5583 0.4067 -0.8523 25 6 4.0355 0.4864 -0.9818 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6032 3.4837 0.4862 34 1 3.7731 3.1119 -1.2460 35 1 5.9501 3.7805 -0.2777 36 1 5.8208 2.4755 0.9269 37 1 5.9298 2.1221 -2.1043 38 1 7.9952 1.8230 -0.0241 39 1 7.3135 3.1101 -3.5032 40 1 8.6451 3.9015 -2.6265 41 1 10.8472 1.9392 -3.4684 42 1 11.3242 2.7886 -4.9584 43 1 10.9868 3.7137 -3.4760 44 1 7.7872 1.8107 -5.5845 45 1 9.4554 1.6772 -6.1900 46 1 8.9787 0.8280 -4.6997 47 1 11.0311 3.5387 -7.7239 48 1 5.9504 -0.2913 -1.5919 49 1 5.8209 0.0632 0.1483 50 1 3.7733 0.8168 -1.9869 51 1 3.6034 -0.4974 -0.7986 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331315070.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:11 Heat of formation + Delta-G solvation = -84.760589 kcal Electronic energy + Delta-G solvation = -28383.142301 eV Core-core repulsion = 24637.027508 eV Total energy + Delta-G solvation = -3746.114794 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.53975 -36.59968 -36.27779 -36.13662 -35.26427 -33.52270 -31.67769 -31.02364 -30.35800 -26.65558 -25.97324 -25.71925 -25.23286 -23.84110 -22.90898 -21.01346 -20.18208 -19.49287 -18.68472 -17.29894 -16.78126 -15.94385 -15.68298 -15.65908 -15.27067 -15.07843 -14.75594 -14.63678 -14.10462 -13.95728 -13.87414 -13.26121 -13.02581 -12.97538 -12.58994 -12.52455 -12.47970 -12.07538 -12.01270 -11.77666 -11.62868 -11.44018 -11.32876 -11.27065 -11.16261 -11.06023 -11.01484 -10.94169 -10.72286 -10.68834 -10.49428 -10.35950 -10.26551 -10.10094 -9.65685 -9.60349 -9.19944 -8.68283 -8.51315 -8.40869 -6.04177 -4.16401 0.88625 3.21539 3.25755 3.31435 3.32808 3.65706 4.29403 4.37603 4.51990 4.59098 4.69400 4.75210 4.79130 4.92184 5.00549 5.08223 5.14840 5.21161 5.22557 5.26745 5.36038 5.42922 5.44814 5.47828 5.65872 5.67741 5.70825 5.72496 5.80506 5.83988 5.88845 5.95769 5.98654 6.20631 6.31973 6.38656 6.69770 6.79336 6.86345 6.89618 6.90620 7.02602 7.18000 7.31124 7.50010 7.66724 7.97612 8.08820 8.32298 8.81823 9.48982 10.97090 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015814 B = 0.003059 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.175418 B = 9150.597848 C =10015.541932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C 0.055 3.945 4 N -0.540 5.540 5 C 0.057 3.943 6 C -0.123 4.123 7 C 0.154 3.846 8 N -1.125 6.125 9 S 2.593 3.407 10 O -0.966 6.966 11 O -0.963 6.963 12 C -0.583 4.583 13 C 0.083 3.917 14 C -0.164 4.164 15 C -0.163 4.163 16 C -0.503 4.503 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.135 4.135 25 C 0.049 3.951 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.411 0.589 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.028 0.972 42 H 0.095 0.905 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.029 0.971 47 H 0.263 0.737 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.037 0.963 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.812 -3.444 14.224 21.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C -0.073 4.073 4 N -0.265 5.265 5 C -0.072 4.072 6 C -0.162 4.162 7 C 0.046 3.954 8 N -0.880 5.880 9 S 2.691 3.309 10 O -0.957 6.957 11 O -0.953 6.953 12 C -0.717 4.717 13 C 0.081 3.919 14 C -0.222 4.222 15 C -0.221 4.221 16 C -0.542 4.542 17 H 0.076 0.924 18 C -0.137 4.137 19 N -0.522 5.522 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.174 4.174 25 C -0.079 4.079 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.244 0.756 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.047 0.953 42 H 0.114 0.886 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.113 0.887 46 H 0.047 0.953 47 H 0.073 0.927 48 H 0.104 0.896 49 H 0.093 0.907 50 H 0.055 0.945 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.042 -4.438 14.213 21.165 hybrid contribution -0.600 1.906 -1.068 2.266 sum -15.642 -2.532 13.145 20.588 Atomic orbital electron populations 1.21737 0.95584 1.01799 1.01779 1.21715 0.95691 0.96541 1.02857 1.22158 0.87159 0.97201 1.00771 1.62051 1.07095 1.07174 1.50208 1.22066 0.94996 0.90054 1.00096 1.21918 0.94345 0.99594 1.00334 1.20749 0.79415 0.95742 0.99507 1.55936 1.15871 1.91827 1.24397 1.05612 0.73224 0.78108 0.73943 1.93550 1.36979 1.87867 1.77262 1.93537 1.79249 1.47836 1.74637 1.30539 1.09947 1.18176 1.13015 1.17913 0.90011 0.96721 0.87283 1.22276 0.99441 0.98325 1.02136 1.22272 1.01016 0.95273 1.03552 1.20904 1.25633 1.02542 1.05155 0.92410 1.24935 0.94911 0.96508 0.97357 1.69785 1.27165 1.32962 1.22246 0.86603 0.78127 0.83340 0.79587 1.20283 1.21164 1.20290 1.22157 0.93960 0.97577 1.03732 1.22239 0.95262 0.97063 0.93362 0.92820 0.92534 0.92684 0.91452 0.91058 0.90775 0.94859 0.90388 0.94421 0.90509 0.90322 0.90165 0.75587 0.86715 0.86305 0.95345 0.88644 0.94485 0.94571 0.88676 0.95257 0.92668 0.89560 0.90656 0.94513 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.13 -0.94 5.18 -26.73 -0.14 -1.08 16 3 C 0.05 0.44 5.27 -3.82 -0.02 0.42 16 4 N -0.54 -5.11 4.81 -234.66 -1.13 -6.24 16 5 C 0.06 0.51 5.43 -3.83 -0.02 0.49 16 6 C -0.12 -1.18 5.63 -26.65 -0.15 -1.33 16 7 C 0.15 1.84 2.62 -67.80 -0.18 1.67 16 8 N -1.13 -15.09 5.37 -4.79 -0.03 -15.12 16 9 S 2.59 47.49 4.41 -107.50 -0.47 47.01 16 10 O -0.97 -20.30 15.70 -57.54 -0.90 -21.20 16 11 O -0.96 -19.78 14.82 -57.54 -0.85 -20.63 16 12 C -0.58 -11.28 4.90 37.16 0.18 -11.09 16 13 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 14 C -0.16 -4.06 7.78 37.16 0.29 -3.77 16 15 C -0.16 -4.01 7.77 37.16 0.29 -3.72 16 16 C -0.50 -13.17 8.01 -34.44 -0.28 -13.45 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 19 N -0.88 -24.12 9.35 55.43 0.52 -23.61 16 20 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.13 -1.59 5.70 -26.65 -0.15 -1.74 16 25 C 0.05 0.50 4.85 -3.83 -0.02 0.48 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.51 6.21 -51.93 -0.32 0.19 16 30 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.03 0.27 8.08 -51.93 -0.42 -0.15 16 33 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.99 7.16 -51.93 -0.37 0.62 16 38 H 0.41 4.68 8.80 -34.47 -0.30 4.38 16 39 H 0.11 2.00 7.45 -51.93 -0.39 1.61 16 40 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 41 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 42 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 46 H 0.03 0.68 5.46 -51.93 -0.28 0.40 16 47 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 48 H 0.09 1.16 7.51 -51.93 -0.39 0.77 16 49 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.08 0.78 5.81 -51.93 -0.30 0.48 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -31.03 388.14 -11.19 -42.21 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -9.15 Total: 6.27 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 0.00 Total: -30.12 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.63 Total: -44.96 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -1.76 Total: -41.84 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 47.49 SS G_CDS: -0.47 Total: 47.01 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.03 -11.19 -42.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331315070.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.546 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds