Wall clock time and date at job start Tue Mar 31 2020 16:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47183 * 2 1 4 4 N 1.46899 * 109.47044 * 179.97438 * 3 2 1 5 5 C 1.46847 * 110.99862 * 170.00059 * 4 3 2 6 6 C 1.53044 * 109.51335 * 174.15436 * 5 4 3 7 7 C 1.53119 * 109.27589 * 59.18419 * 6 5 4 8 8 N 1.46505 * 109.51821 * 182.37494 * 7 6 5 9 9 S 1.65597 * 119.99903 * 215.00011 * 8 7 6 10 10 O 1.42095 * 104.27610 * 181.07425 * 9 8 7 11 11 O 1.42099 * 104.27626 * 308.92684 * 9 8 7 12 12 C 1.81395 * 104.44892 * 64.99984 * 9 8 7 13 13 C 1.53008 * 109.46948 * 179.97438 * 12 9 8 14 14 C 1.52999 * 109.46783 * 300.00277 * 13 12 9 15 15 C 1.52998 * 109.46826 * 59.99980 * 13 12 9 16 16 C 1.50699 * 109.46966 * 179.97438 * 13 12 9 17 17 H 1.07997 * 120.00238 * 0.02562 * 16 13 12 18 18 C 1.37875 * 119.99490 * 179.97438 * 16 13 12 19 19 N 1.31507 * 120.00597 * 0.02562 * 18 16 13 20 20 Si 1.86809 * 119.99546 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47065 * 60.00256 * 20 18 16 22 22 H 1.48504 * 109.46698 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46882 * 299.99825 * 20 18 16 24 24 C 1.53120 * 109.16202 * 302.34077 * 7 6 5 25 25 C 1.46847 * 110.99299 * 45.79217 * 4 3 2 26 26 H 1.08997 * 109.47114 * 60.00499 * 1 2 3 27 27 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47300 * 300.00397 * 1 2 3 29 29 H 1.08999 * 109.47300 * 239.99603 * 2 1 3 30 30 H 1.09007 * 109.47157 * 119.99556 * 2 1 3 31 31 H 1.09002 * 109.46622 * 59.99826 * 3 2 1 32 32 H 1.08997 * 109.46688 * 299.99762 * 3 2 1 33 33 H 1.09002 * 109.46448 * 54.14158 * 5 4 3 34 34 H 1.08994 * 109.45958 * 294.16523 * 5 4 3 35 35 H 1.09000 * 109.49745 * 179.12223 * 6 5 4 36 36 H 1.08996 * 109.50070 * 299.23917 * 6 5 4 37 37 H 1.08993 * 109.52284 * 62.25342 * 7 6 5 38 38 H 0.97003 * 119.99754 * 35.00112 * 8 7 6 39 39 H 1.08998 * 109.47344 * 299.99738 * 12 9 8 40 40 H 1.08994 * 109.46946 * 60.00372 * 12 9 8 41 41 H 1.09001 * 109.47799 * 60.00388 * 14 13 12 42 42 H 1.09003 * 109.46652 * 180.02562 * 14 13 12 43 43 H 1.08994 * 109.47172 * 299.99382 * 14 13 12 44 44 H 1.08998 * 109.47305 * 60.00297 * 15 13 12 45 45 H 1.09003 * 109.46688 * 179.97438 * 15 13 12 46 46 H 1.08999 * 109.47104 * 299.99810 * 15 13 12 47 47 H 0.97001 * 120.00889 * 180.02562 * 19 18 16 48 48 H 1.08996 * 109.50328 * 177.59853 * 24 7 6 49 49 H 1.08996 * 109.50004 * 297.72216 * 24 7 6 50 50 H 1.09005 * 109.46836 * 65.83946 * 25 4 3 51 51 H 1.08995 * 109.45748 * 305.85482 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0354 2.7926 -0.2374 6 6 5.5582 2.7816 -0.0857 7 6 6.1592 1.7947 -1.0903 8 7 7.6122 1.7379 -0.9113 9 16 8.6005 1.5283 -2.2233 10 8 9.9106 1.4973 -1.6738 11 8 8.0598 0.3973 -2.8923 12 6 8.3613 3.0287 -3.2144 13 6 9.2327 2.9548 -4.4699 14 6 10.7034 2.8407 -4.0639 15 6 8.8349 1.7295 -5.2953 16 6 9.0335 4.2010 -5.2936 17 1 8.3538 4.9690 -4.9553 18 6 9.7198 4.3610 -6.4786 19 7 10.5479 3.4260 -6.8904 20 14 9.4734 5.9060 -7.4993 21 1 9.8590 7.0953 -6.6980 22 1 10.3200 5.8348 -8.7173 23 1 8.0460 6.0163 -7.8937 24 6 5.5583 0.4067 -0.8523 25 6 4.0355 0.4864 -0.9818 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6032 3.4837 0.4862 34 1 3.7731 3.1119 -1.2460 35 1 5.9501 3.7805 -0.2777 36 1 5.8208 2.4755 0.9269 37 1 5.9298 2.1221 -2.1043 38 1 7.9952 1.8230 -0.0241 39 1 7.3135 3.1101 -3.5032 40 1 8.6451 3.9015 -2.6265 41 1 10.8472 1.9392 -3.4684 42 1 11.3242 2.7886 -4.9584 43 1 10.9868 3.7137 -3.4760 44 1 7.7872 1.8107 -5.5845 45 1 9.4554 1.6772 -6.1900 46 1 8.9787 0.8280 -4.6997 47 1 11.0311 3.5387 -7.7239 48 1 5.9504 -0.2913 -1.5919 49 1 5.8209 0.0632 0.1483 50 1 3.7733 0.8168 -1.9869 51 1 3.6034 -0.4974 -0.7986 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331315070.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:10 Heat of formation + Delta-G solvation = -105.746217 kcal Electronic energy + Delta-G solvation = -28384.052306 eV Core-core repulsion = 24637.027508 eV Total energy + Delta-G solvation = -3747.024799 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.33256 -38.13486 -38.09379 -37.09274 -36.82842 -34.27205 -33.63892 -31.83917 -31.19504 -28.33757 -27.69723 -27.25851 -26.65473 -24.59635 -23.71430 -21.73391 -21.43555 -20.83045 -20.14138 -18.74896 -17.90079 -17.70811 -16.89113 -16.71647 -16.63244 -16.25934 -15.88612 -15.79165 -15.09661 -14.88424 -14.80833 -14.66922 -14.59835 -14.42755 -13.86997 -13.81949 -13.42879 -13.20682 -13.11513 -12.99751 -12.95527 -12.86232 -12.79607 -12.51892 -12.49862 -12.30096 -12.19385 -12.17622 -12.10620 -12.08836 -11.95161 -11.61258 -11.58238 -11.48675 -11.33516 -11.28540 -10.64669 -10.41680 -10.25287 -9.23372 -8.03321 -6.22197 -0.59371 1.44854 1.45186 1.52451 1.90417 2.43710 2.86150 2.96164 3.18782 3.33705 3.68896 3.84315 3.94745 4.03779 4.07481 4.10726 4.16822 4.31199 4.32981 4.44303 4.46915 4.58626 4.60106 4.64181 4.77700 4.82032 4.84687 4.86047 4.87176 4.90805 4.97732 4.98910 5.05062 5.08177 5.18687 5.23883 5.28422 5.32459 5.37324 5.42092 5.45110 5.50362 5.63870 5.96914 6.10720 6.12612 6.17180 6.20687 6.33688 6.82478 7.46139 8.96378 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015814 B = 0.003059 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.175418 B = 9150.597848 C =10015.541932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.055 3.945 4 N -0.545 5.545 5 C 0.055 3.945 6 C -0.117 4.117 7 C 0.144 3.856 8 N -1.107 6.107 9 S 2.613 3.387 10 O -0.995 6.995 11 O -0.987 6.987 12 C -0.587 4.587 13 C 0.070 3.930 14 C -0.161 4.161 15 C -0.159 4.159 16 C -0.518 4.518 17 H 0.063 0.937 18 C 0.017 3.983 19 N -0.908 5.908 20 Si 0.954 3.046 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.271 1.271 24 C -0.134 4.134 25 C 0.052 3.948 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.424 0.576 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.032 0.968 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.070 0.930 46 H 0.033 0.967 47 H 0.261 0.739 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.030 0.970 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.672 -2.273 15.698 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.073 4.073 4 N -0.270 5.270 5 C -0.074 4.074 6 C -0.156 4.156 7 C 0.037 3.963 8 N -0.866 5.866 9 S 2.710 3.290 10 O -0.985 6.985 11 O -0.977 6.977 12 C -0.719 4.719 13 C 0.068 3.932 14 C -0.219 4.219 15 C -0.217 4.217 16 C -0.557 4.557 17 H 0.081 0.919 18 C -0.182 4.182 19 N -0.547 5.547 20 Si 0.780 3.220 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.196 1.196 24 C -0.174 4.174 25 C -0.076 4.076 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.050 0.950 33 H 0.113 0.887 34 H 0.053 0.947 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.260 0.740 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.052 0.948 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.098 0.902 50 H 0.049 0.951 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.904 -3.259 15.696 23.296 hybrid contribution -0.064 1.500 -1.473 2.104 sum -16.968 -1.759 14.223 22.210 Atomic orbital electron populations 1.21715 0.94688 1.02173 1.02067 1.21687 0.96460 0.96039 1.02412 1.22210 0.86214 0.97698 1.01128 1.62073 1.08002 1.07228 1.49673 1.22131 0.94564 0.90168 1.00525 1.21903 0.94617 0.99299 0.99772 1.21013 0.78171 0.96745 1.00356 1.55462 1.16194 1.91417 1.23548 1.04751 0.72773 0.77311 0.74189 1.93504 1.39146 1.88061 1.77773 1.93505 1.79587 1.48817 1.75809 1.30466 1.10136 1.19818 1.11506 1.17902 0.90358 0.95728 0.89175 1.22216 0.99925 0.98675 1.01059 1.22201 1.00636 0.96077 1.02803 1.21269 1.25524 1.03361 1.05566 0.91852 1.25683 0.94833 0.99106 0.98590 1.69933 1.27854 1.34465 1.22440 0.85677 0.78122 0.80192 0.78016 1.19699 1.21368 1.19641 1.22116 0.95104 0.96941 1.03222 1.22181 0.94148 0.97917 0.93364 0.92836 0.92163 0.92074 0.92030 0.91341 0.89843 0.94977 0.88664 0.94717 0.89374 0.89562 0.90530 0.74032 0.84835 0.84447 0.94935 0.91053 0.94120 0.94185 0.91126 0.94800 0.92915 0.91737 0.90210 0.95141 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.13 -1.64 5.18 30.60 0.16 -1.48 16 3 C 0.05 0.76 5.27 86.30 0.46 1.22 16 4 N -0.54 -9.12 4.81 -896.34 -4.31 -13.43 16 5 C 0.05 0.85 5.43 86.33 0.47 1.31 16 6 C -0.12 -1.92 5.63 30.65 0.17 -1.74 16 7 C 0.14 3.20 2.62 45.07 0.12 3.32 16 8 N -1.11 -27.74 5.37 -169.05 -0.91 -28.65 16 9 S 2.61 93.38 4.41 -56.49 -0.25 93.13 16 10 O -0.99 -41.16 15.70 -127.65 -2.00 -43.17 16 11 O -0.99 -40.34 14.82 -127.65 -1.89 -42.23 16 12 C -0.59 -21.87 4.90 71.98 0.35 -21.52 16 13 C 0.07 3.38 0.52 -52.93 -0.03 3.36 16 14 C -0.16 -8.03 7.78 71.98 0.56 -7.47 16 15 C -0.16 -7.91 7.77 71.98 0.56 -7.35 16 16 C -0.52 -26.83 8.01 25.60 0.21 -26.62 16 17 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 18 C 0.02 0.91 5.15 84.66 0.44 1.35 16 19 N -0.91 -50.38 9.35 21.45 0.20 -50.18 16 20 Si 0.95 41.92 29.54 68.60 2.03 43.95 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 C -0.13 -3.00 5.70 30.65 0.17 -2.83 16 25 C 0.05 1.00 4.85 86.33 0.42 1.41 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.85 6.21 -2.39 -0.01 0.84 16 30 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.03 0.46 8.08 -2.39 -0.02 0.44 16 33 H 0.10 1.18 8.12 -2.39 -0.02 1.16 16 34 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.77 7.16 -2.39 -0.02 1.75 16 38 H 0.42 8.73 8.80 -96.74 -0.85 7.88 16 39 H 0.13 4.41 7.45 -2.39 -0.02 4.39 16 40 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 41 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 42 H 0.07 3.89 6.07 -2.39 -0.01 3.87 16 43 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 46 H 0.03 1.60 5.46 -2.39 -0.01 1.59 16 47 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 48 H 0.06 1.73 7.51 -2.39 -0.02 1.71 16 49 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 51 H 0.09 1.60 5.81 -2.39 -0.01 1.59 16 Total: -1.00 -65.80 388.14 -2.32 -68.12 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.05 Total: 30.34 kcal Atomic # 6 Polarization: -62.65 SS G_CDS: 4.77 Total: -57.89 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -5.01 Total: -92.26 kcal Atomic # 8 Polarization: -81.50 SS G_CDS: -3.90 Total: -85.39 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 93.38 SS G_CDS: -0.25 Total: 93.13 kcal Total: -65.80 -2.32 -68.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331315070.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.624 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds