Wall clock time and date at job start Tue Mar 31 2020 16:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47141 * 2 1 4 4 N 1.46894 * 109.47587 * 120.00302 * 2 1 3 5 5 C 1.46849 * 110.99996 * 50.78506 * 4 2 1 6 6 C 1.53039 * 109.52261 * 185.84320 * 5 4 2 7 7 C 1.53125 * 109.30863 * 300.84171 * 6 5 4 8 8 C 1.53116 * 109.15790 * 57.59749 * 7 6 5 9 9 H 1.09000 * 109.50481 * 62.36899 * 8 7 6 10 10 N 1.46506 * 109.50135 * 182.44169 * 8 7 6 11 11 S 1.65595 * 120.00048 * 264.92150 * 10 8 7 12 12 O 1.42099 * 104.27624 * 308.92864 * 11 10 8 13 13 O 1.42104 * 104.27805 * 181.07310 * 11 10 8 14 14 C 1.81398 * 104.45258 * 65.00103 * 11 10 8 15 15 C 1.52997 * 109.47445 * 179.97438 * 14 11 10 16 16 C 1.52996 * 109.47117 * 300.00311 * 15 14 11 17 17 C 1.53002 * 109.46865 * 60.00272 * 15 14 11 18 18 C 1.50700 * 109.46956 * 180.02562 * 15 14 11 19 19 H 1.08002 * 120.00530 * 357.69026 * 18 15 14 20 20 C 1.37880 * 119.99671 * 177.69571 * 18 15 14 21 21 N 1.31517 * 120.00213 * 6.58233 * 20 18 15 22 22 Si 1.86799 * 119.99845 * 186.57651 * 20 18 15 23 23 H 1.48506 * 109.46901 * 84.99648 * 22 20 18 24 24 H 1.48503 * 109.47250 * 204.99609 * 22 20 18 25 25 H 1.48499 * 109.47570 * 324.99911 * 22 20 18 26 26 C 1.46849 * 111.00255 * 175.00032 * 4 2 1 27 27 H 1.09002 * 109.46742 * 299.99802 * 1 2 3 28 28 H 1.08997 * 109.47884 * 59.99391 * 1 2 3 29 29 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46742 * 240.00198 * 2 1 3 31 31 H 1.08997 * 109.47441 * 60.00085 * 3 2 1 32 32 H 1.09006 * 109.47412 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47445 * 300.00365 * 3 2 1 34 34 H 1.08997 * 109.46502 * 305.85834 * 5 4 2 35 35 H 1.08996 * 109.46112 * 65.82909 * 5 4 2 36 36 H 1.08996 * 109.50751 * 60.76503 * 6 5 4 37 37 H 1.09001 * 109.50213 * 180.88692 * 6 5 4 38 38 H 1.09000 * 109.49396 * 297.71253 * 7 6 5 39 39 H 1.08996 * 109.55491 * 177.52266 * 7 6 5 40 40 H 0.96999 * 119.99612 * 84.92795 * 10 8 7 41 41 H 1.09003 * 109.46774 * 300.00446 * 14 11 10 42 42 H 1.08998 * 109.46951 * 59.99827 * 14 11 10 43 43 H 1.08998 * 109.47299 * 66.66796 * 16 15 14 44 44 H 1.09000 * 109.47060 * 186.67240 * 16 15 14 45 45 H 1.09001 * 109.47215 * 306.66550 * 16 15 14 46 46 H 1.08994 * 109.47206 * 60.00131 * 17 15 14 47 47 H 1.08995 * 109.46795 * 180.02562 * 17 15 14 48 48 H 1.08998 * 109.46808 * 299.99631 * 17 15 14 49 49 H 0.97003 * 120.00240 * 180.02562 * 21 20 18 50 50 H 1.08998 * 109.46468 * 54.14346 * 26 4 2 51 51 H 1.08999 * 109.45631 * 294.17318 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.3780 -2.0050 1.3481 6 6 1.8004 -2.6329 2.6783 7 6 3.3241 -2.7827 2.7062 8 6 3.9679 -1.4089 2.4999 9 1 3.6855 -0.7479 3.3193 10 7 5.4256 -1.5519 2.4671 11 16 6.3117 -1.3187 3.8465 12 8 5.8691 -0.0614 4.3388 13 8 7.6581 -1.5114 3.4349 14 6 5.7868 -2.6564 4.9534 15 6 6.5443 -2.5489 6.2784 16 6 8.0474 -2.6634 6.0171 17 6 6.2414 -1.1986 6.9309 18 6 6.1086 -3.6607 7.1977 19 1 5.3389 -4.3504 6.8841 20 6 6.6925 -3.7973 8.4392 21 7 7.5343 -2.8852 8.8740 22 14 6.2878 -5.2779 9.5039 23 1 7.1641 -6.4151 9.1240 24 1 6.5108 -4.9366 10.9319 25 1 4.8668 -5.6592 9.3022 26 6 3.4828 -0.8164 1.1750 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 0.2949 -1.8837 1.3315 35 1 1.6833 -2.6536 0.5271 36 1 1.4832 -1.9916 3.5005 37 1 1.3364 -3.6138 2.7812 38 1 3.6381 -3.4557 1.9083 39 1 3.6331 -3.1890 3.6693 40 1 5.8716 -1.7832 1.6374 41 1 4.7157 -2.5751 5.1391 42 1 6.0029 -3.6184 4.4888 43 1 8.3849 -1.7955 5.4506 44 1 8.5792 -2.7060 6.9677 45 1 8.2492 -3.5703 5.4471 46 1 5.1705 -1.1171 7.1170 47 1 6.7814 -1.1219 7.8746 48 1 6.5569 -0.3948 6.2658 49 1 7.9454 -2.9815 9.7473 50 1 3.9283 0.1681 1.0326 51 1 3.7781 -1.4707 0.3547 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331347369.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:32 Heat of formation + Delta-G solvation = -79.740273 kcal Electronic energy + Delta-G solvation = -28836.818219 eV Core-core repulsion = 25090.921123 eV Total energy + Delta-G solvation = -3745.897096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.71467 -36.57941 -36.26733 -36.11933 -35.27493 -33.50055 -31.67721 -30.90340 -29.29673 -27.15153 -26.69627 -25.70543 -25.21851 -24.35531 -22.66604 -20.62164 -20.15520 -19.52941 -18.68258 -17.36398 -16.88571 -16.03680 -15.78510 -15.33513 -15.09773 -15.00489 -14.69280 -14.58208 -14.04524 -13.98770 -13.66110 -13.27628 -13.07590 -12.97466 -12.58022 -12.49789 -12.36775 -12.01898 -11.98536 -11.73678 -11.70253 -11.52465 -11.39706 -11.30849 -11.14581 -11.03111 -10.96722 -10.85940 -10.74847 -10.65704 -10.48281 -10.35471 -10.27906 -10.04025 -9.65024 -9.60559 -9.21165 -8.69711 -8.52137 -8.37257 -6.03374 -4.14810 0.89098 3.13816 3.26430 3.33509 3.34866 3.68276 4.31402 4.39721 4.54198 4.59292 4.67963 4.78064 4.82543 4.88778 5.05297 5.07377 5.17613 5.21380 5.26604 5.34144 5.39522 5.49382 5.51451 5.56337 5.63698 5.66036 5.70337 5.75981 5.77307 5.83759 5.94551 5.99039 6.03422 6.16343 6.30068 6.41995 6.70220 6.79988 6.87009 6.91245 6.92729 7.04553 7.16518 7.32726 7.50131 7.68310 7.98701 8.10979 8.34446 8.83467 9.50259 10.97744 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018343 B = 0.003319 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.121239 B = 8433.168435 C = 9315.857322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 C -0.148 4.148 4 N -0.531 5.531 5 C 0.049 3.951 6 C -0.116 4.116 7 C -0.149 4.149 8 C 0.153 3.847 9 H 0.102 0.898 10 N -1.126 6.126 11 S 2.593 3.407 12 O -0.962 6.962 13 O -0.967 6.967 14 C -0.582 4.582 15 C 0.083 3.917 16 C -0.161 4.161 17 C -0.164 4.164 18 C -0.502 4.502 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.882 5.882 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.053 3.947 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.409 0.591 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.026 0.974 44 H 0.094 0.906 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.097 0.903 48 H 0.027 0.973 49 H 0.262 0.738 50 H 0.086 0.914 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.473 2.669 -17.465 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 C -0.205 4.205 4 N -0.257 5.257 5 C -0.079 4.079 6 C -0.155 4.155 7 C -0.189 4.189 8 C 0.045 3.955 9 H 0.120 0.880 10 N -0.881 5.881 11 S 2.691 3.309 12 O -0.952 6.952 13 O -0.957 6.957 14 C -0.716 4.716 15 C 0.081 3.919 16 C -0.219 4.219 17 C -0.222 4.222 18 C -0.541 4.541 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.722 3.278 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.076 4.076 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.242 0.758 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.045 0.955 44 H 0.112 0.888 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.116 0.884 48 H 0.045 0.955 49 H 0.073 0.927 50 H 0.104 0.896 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.940 3.791 -16.632 20.822 hybrid contribution -0.168 -2.100 -0.423 2.149 sum -12.108 1.691 -17.055 20.984 Atomic orbital electron populations 1.21966 0.94304 1.02033 1.02414 1.21590 0.95563 0.95254 0.90625 1.21892 1.01302 0.95088 1.02232 1.61891 1.05077 1.19964 1.38805 1.22250 0.99669 0.88839 0.97140 1.21565 0.95259 1.00903 0.97737 1.22312 0.95745 0.97371 1.03437 1.20728 0.78807 0.96531 0.99478 0.87974 1.55919 1.15832 1.88780 1.27578 1.05610 0.73768 0.77458 0.74038 1.93547 1.82209 1.39610 1.79853 1.93555 1.33738 1.87547 1.80872 1.30627 1.10980 1.16301 1.13670 1.17919 0.91078 0.96132 0.86810 1.22215 0.98394 0.98366 1.02926 1.22306 1.00822 0.94951 1.04085 1.20933 1.21425 1.12179 0.99611 0.92293 1.24936 0.95139 0.96181 0.97456 1.69814 1.29885 1.32953 1.19355 0.86572 0.78717 0.82983 0.79483 1.20584 1.21210 1.20002 1.22318 0.87835 1.01338 0.96103 0.91493 0.92251 0.92377 0.94377 0.91452 0.92439 0.92359 0.89949 0.95021 0.90477 0.90962 0.91460 0.90295 0.75831 0.86319 0.86298 0.95541 0.88753 0.94608 0.94477 0.88445 0.95456 0.92722 0.89611 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.65 37.16 0.32 -0.72 16 2 C 0.08 0.65 2.69 -67.72 -0.18 0.47 16 3 C -0.15 -1.21 9.10 37.16 0.34 -0.87 16 4 N -0.53 -5.26 4.52 -226.70 -1.03 -6.29 16 5 C 0.05 0.43 5.01 -3.83 -0.02 0.41 16 6 C -0.12 -1.11 6.09 -26.65 -0.16 -1.27 16 7 C -0.15 -1.65 5.56 -26.61 -0.15 -1.80 16 8 C 0.15 1.90 2.85 -67.85 -0.19 1.70 16 9 H 0.10 1.44 7.48 -51.93 -0.39 1.05 16 10 N -1.13 -15.33 5.36 -4.82 -0.03 -15.35 16 11 S 2.59 48.15 4.47 -107.50 -0.48 47.67 16 12 O -0.96 -20.40 15.01 -57.54 -0.86 -21.26 16 13 O -0.97 -20.41 15.84 -57.54 -0.91 -21.32 16 14 C -0.58 -11.25 4.23 37.16 0.16 -11.09 16 15 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 16 C -0.16 -3.98 7.58 37.16 0.28 -3.70 16 17 C -0.16 -4.05 7.80 37.16 0.29 -3.76 16 18 C -0.50 -13.10 8.01 -34.44 -0.28 -13.37 16 19 H 0.06 1.49 7.75 -52.49 -0.41 1.08 16 20 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 21 N -0.88 -24.07 9.39 55.43 0.52 -23.55 16 22 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.05 0.57 4.82 -3.83 -0.02 0.55 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.38 6.19 -51.93 -0.32 0.06 16 30 H 0.04 0.32 8.13 -51.93 -0.42 -0.10 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.50 6.41 -51.93 -0.33 0.16 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.64 5.83 -51.93 -0.30 0.34 16 35 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.94 5.85 -51.93 -0.30 0.63 16 40 H 0.41 4.67 8.80 -34.47 -0.30 4.37 16 41 H 0.12 2.08 6.74 -51.92 -0.35 1.73 16 42 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 43 H 0.03 0.62 5.96 -51.93 -0.31 0.31 16 44 H 0.09 2.50 5.99 -51.93 -0.31 2.19 16 45 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.10 2.60 6.01 -51.93 -0.31 2.29 16 48 H 0.03 0.64 5.47 -51.93 -0.28 0.36 16 49 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 50 H 0.09 0.94 6.18 -51.93 -0.32 0.62 16 51 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -31.16 382.24 -10.71 -41.87 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -8.88 Total: 6.83 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 0.22 Total: -29.90 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.53 Total: -45.19 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.78 Total: -42.58 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 48.15 SS G_CDS: -0.48 Total: 47.67 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.16 -10.71 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331347369.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.869 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds