Wall clock time and date at job start Tue Mar 31 2020 16:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47141 * 2 1 4 4 N 1.46894 * 109.47587 * 120.00302 * 2 1 3 5 5 C 1.46849 * 110.99996 * 50.78506 * 4 2 1 6 6 C 1.53039 * 109.52261 * 185.84320 * 5 4 2 7 7 C 1.53125 * 109.30863 * 300.84171 * 6 5 4 8 8 C 1.53116 * 109.15790 * 57.59749 * 7 6 5 9 9 H 1.09000 * 109.50481 * 62.36899 * 8 7 6 10 10 N 1.46506 * 109.50135 * 182.44169 * 8 7 6 11 11 S 1.65595 * 120.00048 * 264.92150 * 10 8 7 12 12 O 1.42099 * 104.27624 * 308.92864 * 11 10 8 13 13 O 1.42104 * 104.27805 * 181.07310 * 11 10 8 14 14 C 1.81398 * 104.45258 * 65.00103 * 11 10 8 15 15 C 1.52997 * 109.47445 * 179.97438 * 14 11 10 16 16 C 1.52996 * 109.47117 * 300.00311 * 15 14 11 17 17 C 1.53002 * 109.46865 * 60.00272 * 15 14 11 18 18 C 1.50700 * 109.46956 * 180.02562 * 15 14 11 19 19 H 1.08002 * 120.00530 * 357.69026 * 18 15 14 20 20 C 1.37880 * 119.99671 * 177.69571 * 18 15 14 21 21 N 1.31517 * 120.00213 * 6.58233 * 20 18 15 22 22 Si 1.86799 * 119.99845 * 186.57651 * 20 18 15 23 23 H 1.48506 * 109.46901 * 84.99648 * 22 20 18 24 24 H 1.48503 * 109.47250 * 204.99609 * 22 20 18 25 25 H 1.48499 * 109.47570 * 324.99911 * 22 20 18 26 26 C 1.46849 * 111.00255 * 175.00032 * 4 2 1 27 27 H 1.09002 * 109.46742 * 299.99802 * 1 2 3 28 28 H 1.08997 * 109.47884 * 59.99391 * 1 2 3 29 29 H 1.08997 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46742 * 240.00198 * 2 1 3 31 31 H 1.08997 * 109.47441 * 60.00085 * 3 2 1 32 32 H 1.09006 * 109.47412 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47445 * 300.00365 * 3 2 1 34 34 H 1.08997 * 109.46502 * 305.85834 * 5 4 2 35 35 H 1.08996 * 109.46112 * 65.82909 * 5 4 2 36 36 H 1.08996 * 109.50751 * 60.76503 * 6 5 4 37 37 H 1.09001 * 109.50213 * 180.88692 * 6 5 4 38 38 H 1.09000 * 109.49396 * 297.71253 * 7 6 5 39 39 H 1.08996 * 109.55491 * 177.52266 * 7 6 5 40 40 H 0.96999 * 119.99612 * 84.92795 * 10 8 7 41 41 H 1.09003 * 109.46774 * 300.00446 * 14 11 10 42 42 H 1.08998 * 109.46951 * 59.99827 * 14 11 10 43 43 H 1.08998 * 109.47299 * 66.66796 * 16 15 14 44 44 H 1.09000 * 109.47060 * 186.67240 * 16 15 14 45 45 H 1.09001 * 109.47215 * 306.66550 * 16 15 14 46 46 H 1.08994 * 109.47206 * 60.00131 * 17 15 14 47 47 H 1.08995 * 109.46795 * 180.02562 * 17 15 14 48 48 H 1.08998 * 109.46808 * 299.99631 * 17 15 14 49 49 H 0.97003 * 120.00240 * 180.02562 * 21 20 18 50 50 H 1.08998 * 109.46468 * 54.14346 * 26 4 2 51 51 H 1.08999 * 109.45631 * 294.17318 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.3780 -2.0050 1.3481 6 6 1.8004 -2.6329 2.6783 7 6 3.3241 -2.7827 2.7062 8 6 3.9679 -1.4089 2.4999 9 1 3.6855 -0.7479 3.3193 10 7 5.4256 -1.5519 2.4671 11 16 6.3117 -1.3187 3.8465 12 8 5.8691 -0.0614 4.3388 13 8 7.6581 -1.5114 3.4349 14 6 5.7868 -2.6564 4.9534 15 6 6.5443 -2.5489 6.2784 16 6 8.0474 -2.6634 6.0171 17 6 6.2414 -1.1986 6.9309 18 6 6.1086 -3.6607 7.1977 19 1 5.3389 -4.3504 6.8841 20 6 6.6925 -3.7973 8.4392 21 7 7.5343 -2.8852 8.8740 22 14 6.2878 -5.2779 9.5039 23 1 7.1641 -6.4151 9.1240 24 1 6.5108 -4.9366 10.9319 25 1 4.8668 -5.6592 9.3022 26 6 3.4828 -0.8164 1.1750 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 0.2949 -1.8837 1.3315 35 1 1.6833 -2.6536 0.5271 36 1 1.4832 -1.9916 3.5005 37 1 1.3364 -3.6138 2.7812 38 1 3.6381 -3.4557 1.9083 39 1 3.6331 -3.1890 3.6693 40 1 5.8716 -1.7832 1.6374 41 1 4.7157 -2.5751 5.1391 42 1 6.0029 -3.6184 4.4888 43 1 8.3849 -1.7955 5.4506 44 1 8.5792 -2.7060 6.9677 45 1 8.2492 -3.5703 5.4471 46 1 5.1705 -1.1171 7.1170 47 1 6.7814 -1.1219 7.8746 48 1 6.5569 -0.3948 6.2658 49 1 7.9454 -2.9815 9.7473 50 1 3.9283 0.1681 1.0326 51 1 3.7781 -1.4707 0.3547 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331347369.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:32 Heat of formation + Delta-G solvation = -101.081695 kcal Electronic energy + Delta-G solvation = -28837.743653 eV Core-core repulsion = 25090.921123 eV Total energy + Delta-G solvation = -3746.822530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.50070 -38.13208 -38.11620 -37.07470 -36.87814 -34.38311 -33.63115 -31.63713 -30.16972 -28.37930 -27.81320 -27.69217 -27.23427 -25.14660 -23.51158 -21.44799 -21.34523 -20.92019 -20.09326 -18.82403 -17.86046 -17.76423 -17.01682 -16.88943 -16.62305 -15.92498 -15.80650 -15.74674 -15.04833 -14.82958 -14.82027 -14.68162 -14.45078 -14.36138 -13.93698 -13.77771 -13.54411 -13.19194 -13.05795 -13.00053 -12.86292 -12.79501 -12.71082 -12.58687 -12.51918 -12.42649 -12.33468 -12.20653 -12.13278 -12.01617 -11.95466 -11.64598 -11.57207 -11.46054 -11.38978 -11.15954 -10.66843 -10.38707 -10.30701 -9.22920 -8.02593 -6.20542 -0.61010 1.45293 1.46912 1.54875 1.84858 2.45119 2.84549 2.92928 3.19498 3.33479 3.70321 3.81083 3.93670 4.02861 4.06912 4.13233 4.18201 4.26627 4.38704 4.44734 4.46132 4.56932 4.61982 4.72459 4.74771 4.82467 4.85471 4.86946 4.92318 4.97520 4.98455 5.00747 5.04295 5.07174 5.09419 5.18506 5.29680 5.37252 5.39422 5.42611 5.49459 5.49847 5.65568 5.97410 6.07363 6.12375 6.20333 6.23584 6.35318 6.84074 7.47460 8.97263 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018343 B = 0.003319 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.121239 B = 8433.168435 C = 9315.857322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 C -0.147 4.147 4 N -0.544 5.544 5 C 0.049 3.951 6 C -0.115 4.115 7 C -0.150 4.150 8 C 0.147 3.853 9 H 0.082 0.918 10 N -1.108 6.108 11 S 2.612 3.388 12 O -0.992 6.992 13 O -0.993 6.993 14 C -0.583 4.583 15 C 0.071 3.929 16 C -0.158 4.158 17 C -0.160 4.160 18 C -0.517 4.517 19 H 0.065 0.935 20 C 0.018 3.982 21 N -0.907 5.907 22 Si 0.954 3.046 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.267 1.267 26 C 0.057 3.943 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.423 0.577 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.027 0.973 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.039 0.961 47 H 0.073 0.927 48 H 0.030 0.970 49 H 0.261 0.739 50 H 0.079 0.921 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.275 1.357 -19.272 24.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.205 4.205 4 N -0.271 5.271 5 C -0.078 4.078 6 C -0.154 4.154 7 C -0.189 4.189 8 C 0.040 3.960 9 H 0.100 0.900 10 N -0.867 5.867 11 S 2.710 3.290 12 O -0.981 6.981 13 O -0.984 6.984 14 C -0.716 4.716 15 C 0.069 3.931 16 C -0.216 4.216 17 C -0.218 4.218 18 C -0.556 4.556 19 H 0.083 0.917 20 C -0.182 4.182 21 N -0.546 5.546 22 Si 0.780 3.220 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.191 1.191 26 C -0.072 4.072 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.258 0.742 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.046 0.954 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.091 0.909 48 H 0.048 0.952 49 H 0.071 0.929 50 H 0.097 0.903 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.745 2.473 -18.449 23.139 hybrid contribution 0.359 -1.643 0.088 1.684 sum -13.387 0.830 -18.361 22.738 Atomic orbital electron populations 1.21937 0.93149 1.02570 1.02642 1.21668 0.96464 0.94936 0.90127 1.21894 1.00796 0.95343 1.02431 1.61888 1.04469 1.20831 1.39905 1.22285 1.00315 0.88358 0.96816 1.21582 0.94187 1.01695 0.97914 1.22319 0.96721 0.96381 1.03464 1.20884 0.77656 0.97472 1.00016 0.89968 1.55407 1.16385 1.88477 1.26471 1.04745 0.73206 0.76637 0.74460 1.93508 1.82592 1.41113 1.80934 1.93512 1.35754 1.87704 1.81398 1.30547 1.11420 1.17888 1.11727 1.17903 0.91139 0.95064 0.88977 1.22159 0.98963 0.98794 1.01717 1.22237 1.00521 0.95919 1.03100 1.21287 1.21467 1.12718 1.00090 0.91693 1.25677 0.95207 0.98445 0.98828 1.69957 1.30736 1.34361 1.19554 0.85640 0.78811 0.79958 0.77625 1.20272 1.21464 1.19103 1.22222 0.88653 1.01121 0.95249 0.92321 0.90985 0.91665 0.93846 0.92608 0.93224 0.90809 0.88715 0.94185 0.91607 0.89321 0.89974 0.91213 0.74153 0.84614 0.84260 0.95426 0.91102 0.93805 0.94230 0.90853 0.95167 0.92934 0.90286 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.65 71.98 0.62 -1.06 16 2 C 0.08 1.11 2.69 44.91 0.12 1.23 16 3 C -0.15 -2.21 9.10 71.98 0.66 -1.56 16 4 N -0.54 -9.76 4.52 -871.15 -3.94 -13.70 16 5 C 0.05 0.74 5.01 86.33 0.43 1.17 16 6 C -0.12 -1.94 6.09 30.65 0.19 -1.76 16 7 C -0.15 -2.97 5.56 30.68 0.17 -2.80 16 8 C 0.15 3.45 2.85 45.04 0.13 3.57 16 9 H 0.08 2.28 7.48 -2.39 -0.02 2.26 16 10 N -1.11 -28.54 5.36 -169.16 -0.91 -29.45 16 11 S 2.61 95.43 4.47 -56.49 -0.25 95.18 16 12 O -0.99 -42.17 15.01 -127.65 -1.92 -44.09 16 13 O -0.99 -41.44 15.84 -127.65 -2.02 -43.46 16 14 C -0.58 -21.89 4.23 71.98 0.30 -21.58 16 15 C 0.07 3.43 0.52 -52.93 -0.03 3.40 16 16 C -0.16 -7.89 7.58 71.98 0.55 -7.35 16 17 C -0.16 -8.04 7.80 71.98 0.56 -7.47 16 18 C -0.52 -26.68 8.01 25.60 0.20 -26.48 16 19 H 0.06 3.20 7.75 -2.91 -0.02 3.17 16 20 C 0.02 0.94 5.09 84.65 0.43 1.37 16 21 N -0.91 -50.34 9.39 21.45 0.20 -50.13 16 22 Si 0.95 41.90 29.54 68.60 2.03 43.93 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 C 0.06 1.12 4.82 86.33 0.42 1.54 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.66 6.19 -2.39 -0.01 0.65 16 30 H 0.04 0.60 8.13 -2.39 -0.02 0.59 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.81 6.41 -2.38 -0.02 0.80 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 34 H 0.09 1.20 5.83 -2.39 -0.01 1.18 16 35 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.51 5.85 -2.39 -0.01 1.50 16 40 H 0.42 8.81 8.80 -96.75 -0.85 7.96 16 41 H 0.14 4.58 6.74 -2.39 -0.02 4.56 16 42 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 43 H 0.03 1.32 5.96 -2.39 -0.01 1.30 16 44 H 0.07 3.85 5.99 -2.39 -0.01 3.83 16 45 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.07 4.03 6.01 -2.39 -0.01 4.01 16 48 H 0.03 1.45 5.47 -2.39 -0.01 1.44 16 49 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 50 H 0.08 1.65 6.18 -2.39 -0.01 1.64 16 51 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -66.44 382.24 -2.00 -68.44 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.06 Total: 31.04 kcal Atomic # 6 Polarization: -62.51 SS G_CDS: 4.75 Total: -57.76 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -4.65 Total: -93.28 kcal Atomic # 8 Polarization: -83.61 SS G_CDS: -3.94 Total: -87.54 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 95.43 SS G_CDS: -0.25 Total: 95.18 kcal Total: -66.44 -2.00 -68.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331347369.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.646 kcal (2) G-P(sol) polarization free energy of solvation -66.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds