Wall clock time and date at job start Tue Mar 31 2020 16:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47085 * 2 1 4 4 N 1.46898 * 109.47172 * 119.99892 * 2 1 3 5 5 C 1.46845 * 111.00154 * 298.95318 * 4 2 1 6 6 C 1.53038 * 109.52510 * 174.16098 * 5 4 2 7 7 C 1.53119 * 109.27748 * 59.17953 * 6 5 4 8 8 C 1.53114 * 109.16346 * 302.34730 * 7 6 5 9 9 H 1.08998 * 109.50324 * 297.67574 * 8 7 6 10 10 N 1.46498 * 109.50427 * 177.59307 * 8 7 6 11 11 S 1.65604 * 119.99524 * 94.99970 * 10 8 7 12 12 O 1.42096 * 104.28142 * 308.92954 * 11 10 8 13 13 O 1.42104 * 104.27550 * 181.06858 * 11 10 8 14 14 C 1.81405 * 104.45102 * 65.00399 * 11 10 8 15 15 C 1.52997 * 109.47297 * 179.97438 * 14 11 10 16 16 C 1.52998 * 109.46976 * 299.99663 * 15 14 11 17 17 C 1.53002 * 109.47156 * 59.99355 * 15 14 11 18 18 C 1.50698 * 109.47353 * 179.97438 * 15 14 11 19 19 H 1.08008 * 119.99422 * 0.82809 * 18 15 14 20 20 C 1.37874 * 120.00212 * 180.83434 * 18 15 14 21 21 N 1.31519 * 120.00000 * 194.57306 * 20 18 15 22 22 Si 1.86795 * 119.99820 * 14.57806 * 20 18 15 23 23 H 1.48501 * 109.47606 * 84.45444 * 22 20 18 24 24 H 1.48507 * 109.46723 * 204.45439 * 22 20 18 25 25 H 1.48503 * 109.47162 * 324.45122 * 22 20 18 26 26 C 1.46848 * 110.99961 * 174.74681 * 4 2 1 27 27 H 1.09004 * 109.47372 * 300.00295 * 1 2 3 28 28 H 1.09001 * 109.47189 * 60.00132 * 1 2 3 29 29 H 1.09000 * 109.47142 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47409 * 240.00457 * 2 1 3 31 31 H 1.08998 * 109.46803 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46999 * 299.99984 * 3 2 1 33 33 H 1.09000 * 109.46624 * 59.99976 * 3 2 1 34 34 H 1.09005 * 109.46161 * 54.14184 * 5 4 2 35 35 H 1.08999 * 109.46753 * 294.17978 * 5 4 2 36 36 H 1.09003 * 109.50105 * 299.24112 * 6 5 4 37 37 H 1.09001 * 109.50218 * 179.12178 * 6 5 4 38 38 H 1.09005 * 109.51963 * 182.43912 * 7 6 5 39 39 H 1.09001 * 109.57004 * 62.28855 * 7 6 5 40 40 H 0.96998 * 120.00143 * 275.00123 * 10 8 7 41 41 H 1.09002 * 109.46536 * 299.99724 * 14 11 10 42 42 H 1.09002 * 109.47079 * 59.99412 * 14 11 10 43 43 H 1.09009 * 109.47278 * 70.23184 * 16 15 14 44 44 H 1.08998 * 109.47453 * 190.23604 * 16 15 14 45 45 H 1.09003 * 109.47063 * 310.23752 * 16 15 14 46 46 H 1.09001 * 109.46930 * 60.00536 * 17 15 14 47 47 H 1.09002 * 109.46830 * 179.97438 * 17 15 14 48 48 H 1.08994 * 109.47175 * 300.00420 * 17 15 14 49 49 H 0.96998 * 119.99946 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.46863 * 65.82458 * 26 4 2 51 51 H 1.09000 * 109.46314 * 305.85352 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5694 -0.0123 2.4205 6 6 1.9727 -0.8380 3.6443 7 6 3.4947 -1.0048 3.6622 8 6 3.9427 -1.6716 2.3588 9 1 3.5012 -2.6656 2.2881 10 7 5.4033 -1.7827 2.3431 11 16 6.1326 -3.1818 2.8463 12 8 5.5505 -3.4435 4.1159 13 8 7.5231 -2.9178 2.7182 14 6 5.6071 -4.4268 1.6362 15 6 6.2235 -5.7801 1.9962 16 6 7.7492 -5.6658 1.9805 17 6 5.7577 -6.1974 3.3926 18 6 5.7865 -6.8145 0.9913 19 1 5.1450 -6.5318 0.1696 20 6 6.2053 -8.1217 1.1209 21 7 6.0731 -8.9575 0.1140 22 14 6.9603 -8.7057 2.7265 23 1 5.8806 -9.0958 3.6684 24 1 7.8358 -9.8763 2.4649 25 1 7.7651 -7.6092 3.3228 26 6 3.4822 -0.8217 1.1722 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.4850 0.0963 2.3969 35 1 2.0316 0.9731 2.4789 36 1 1.4997 -1.8187 3.5935 37 1 1.6521 -0.3251 4.5511 38 1 3.7827 -1.6287 4.5084 39 1 3.9681 -0.0271 3.7528 40 1 5.9433 -1.0369 2.0380 41 1 4.5202 -4.5079 1.6471 42 1 5.9394 -4.1297 0.6415 43 1 8.0768 -5.0585 2.8244 44 1 8.1888 -6.6603 2.0562 45 1 8.0689 -5.1971 1.0498 46 1 4.6708 -6.2788 3.4037 47 1 6.1965 -7.1617 3.6488 48 1 6.0735 -5.4493 4.1196 49 1 6.3681 -9.8770 0.2051 50 1 3.9355 0.1674 1.2364 51 1 3.7872 -1.3011 0.2421 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331347370.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:35 Heat of formation + Delta-G solvation = -60.910970 kcal Electronic energy + Delta-G solvation = -28933.825283 eV Core-core repulsion = 25188.744686 eV Total energy + Delta-G solvation = -3745.080597 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.87481 -36.76518 -36.71264 -36.20879 -35.43930 -33.42813 -31.93219 -30.89548 -28.91927 -27.47369 -27.40732 -26.36466 -25.00646 -24.52883 -23.07502 -20.93586 -20.10172 -19.42703 -18.70287 -17.48525 -16.84701 -16.15402 -15.90561 -15.54766 -15.23614 -15.12827 -14.82728 -14.65627 -14.40710 -14.18697 -13.64726 -13.41252 -13.16295 -13.08874 -12.89544 -12.76850 -12.44771 -12.37870 -12.22979 -12.12887 -11.77275 -11.68180 -11.57119 -11.54728 -11.48597 -11.15035 -11.07296 -10.99833 -10.92705 -10.82862 -10.72902 -10.47656 -10.15037 -10.04706 -9.98266 -9.40267 -8.98998 -8.73119 -8.51086 -8.45603 -6.17840 -4.14992 0.71695 2.98628 3.26749 3.35983 3.40013 3.68010 4.16227 4.35600 4.53101 4.55916 4.59146 4.71976 4.74698 4.86344 5.00081 5.02366 5.08029 5.11894 5.21275 5.29164 5.33287 5.40087 5.42880 5.46916 5.51863 5.58334 5.62603 5.66681 5.72011 5.79175 5.89973 5.96711 5.99008 6.01380 6.19527 6.22832 6.28247 6.34042 6.45605 6.50177 6.71223 6.83407 6.88619 6.89084 7.06205 7.14813 7.32751 7.64069 8.40543 8.85264 9.46265 10.94711 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016976 B = 0.003499 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.014243 B = 7999.372869 C = 8663.864751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 C -0.188 4.188 4 N -0.528 5.528 5 C 0.047 3.953 6 C -0.117 4.117 7 C -0.140 4.140 8 C 0.157 3.843 9 H 0.095 0.905 10 N -1.123 6.123 11 S 2.591 3.409 12 O -0.961 6.961 13 O -0.965 6.965 14 C -0.575 4.575 15 C 0.055 3.945 16 C -0.170 4.170 17 C -0.181 4.181 18 C -0.507 4.507 19 H 0.078 0.922 20 C 0.077 3.923 21 N -0.889 5.889 22 Si 0.873 3.127 23 H -0.281 1.281 24 H -0.301 1.301 25 H -0.246 1.246 26 C 0.049 3.951 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.411 0.589 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.036 0.964 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.266 0.734 50 H 0.042 0.958 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.205 20.755 2.108 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.247 4.247 4 N -0.253 5.253 5 C -0.081 4.081 6 C -0.155 4.155 7 C -0.179 4.179 8 C 0.049 3.951 9 H 0.112 0.888 10 N -0.879 5.879 11 S 2.688 3.312 12 O -0.951 6.951 13 O -0.956 6.956 14 C -0.708 4.708 15 C 0.052 3.948 16 C -0.228 4.228 17 C -0.238 4.238 18 C -0.546 4.546 19 H 0.096 0.904 20 C -0.126 4.126 21 N -0.525 5.525 22 Si 0.705 3.295 23 H -0.208 1.208 24 H -0.230 1.230 25 H -0.172 1.172 26 C -0.081 4.081 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.244 0.756 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.055 0.945 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.076 0.924 50 H 0.060 0.940 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.927 19.892 2.871 21.992 hybrid contribution 0.562 0.535 -0.007 0.776 sum -8.365 20.427 2.864 22.259 Atomic orbital electron populations 1.21879 0.94150 1.02720 1.01552 1.21714 0.95906 0.92291 0.93327 1.22500 1.01576 0.98260 1.02361 1.62075 1.10157 1.51073 1.01990 1.22239 1.00641 0.95480 0.89704 1.21583 0.95697 1.01368 0.96890 1.22144 0.95715 1.01488 0.98551 1.20690 0.78892 1.00845 0.94625 0.88751 1.55870 1.14254 1.32907 1.84883 1.05669 0.74080 0.74534 0.76890 1.93544 1.78738 1.84454 1.38385 1.93567 1.30765 1.83684 1.87554 1.30378 1.11410 1.13088 1.15894 1.18224 0.91890 0.90218 0.94479 1.22682 0.97324 1.02236 1.00549 1.22815 1.02405 1.01153 0.97416 1.20653 1.32229 0.91551 1.10130 0.90372 1.24961 0.94718 0.96800 0.96119 1.69938 1.47005 1.05742 1.29858 0.87448 0.79759 0.77609 0.84667 1.20800 1.22955 1.17204 1.22371 0.87773 0.98926 0.99021 0.92565 0.92295 0.91539 0.89674 0.92475 0.92053 0.92348 0.90244 0.94618 0.90565 0.91181 0.89746 0.91961 0.75646 0.85700 0.85480 0.94481 0.91450 0.92364 0.91759 0.93060 0.93183 0.92442 0.93991 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.00 37.16 0.33 -0.68 16 2 C 0.08 0.60 2.96 -67.71 -0.20 0.40 16 3 C -0.19 -1.31 8.50 37.16 0.32 -0.99 16 4 N -0.53 -4.92 4.64 -226.69 -1.05 -5.97 16 5 C 0.05 0.39 4.63 -3.83 -0.02 0.38 16 6 C -0.12 -1.07 6.09 -26.65 -0.16 -1.24 16 7 C -0.14 -1.53 5.61 -26.61 -0.15 -1.68 16 8 C 0.16 1.81 2.72 -67.85 -0.18 1.62 16 9 H 0.09 1.15 7.15 -51.93 -0.37 0.78 16 10 N -1.12 -13.96 5.37 -4.82 -0.03 -13.98 16 11 S 2.59 43.97 4.42 -107.50 -0.48 43.50 16 12 O -0.96 -18.29 14.78 -57.54 -0.85 -19.14 16 13 O -0.97 -18.75 15.92 -57.54 -0.92 -19.66 16 14 C -0.57 -10.47 4.88 37.16 0.18 -10.29 16 15 C 0.05 1.25 0.52 -155.66 -0.08 1.17 16 16 C -0.17 -3.86 6.95 37.16 0.26 -3.60 16 17 C -0.18 -4.06 7.22 37.16 0.27 -3.80 16 18 C -0.51 -13.63 8.62 -34.44 -0.30 -13.93 16 19 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 20 C 0.08 2.17 5.31 -17.82 -0.09 2.07 16 21 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 22 Si 0.87 21.60 22.79 -169.99 -3.87 17.72 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.25 -5.71 4.67 56.52 0.26 -5.45 16 26 C 0.05 0.47 4.56 -3.83 -0.02 0.45 16 27 H 0.06 0.37 6.30 -51.93 -0.33 0.04 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 31 H 0.06 0.42 6.66 -51.93 -0.35 0.07 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.40 6.52 -51.93 -0.34 0.07 16 34 H 0.08 0.60 6.04 -51.93 -0.31 0.29 16 35 H 0.04 0.29 6.62 -51.93 -0.34 -0.05 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 1.08 7.48 -51.93 -0.39 0.69 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.41 4.24 8.80 -34.48 -0.30 3.93 16 41 H 0.12 2.07 7.44 -51.92 -0.39 1.68 16 42 H 0.13 2.12 8.14 -51.92 -0.42 1.70 16 43 H 0.04 0.79 6.21 -51.92 -0.32 0.46 16 44 H 0.07 1.57 4.32 -51.93 -0.22 1.35 16 45 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 46 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.05 1.19 2.28 -51.93 -0.12 1.07 16 48 H 0.05 1.05 5.46 -51.93 -0.28 0.77 16 49 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 50 H 0.04 0.37 6.74 -51.93 -0.35 0.02 16 51 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 LS Contribution 372.03 15.07 5.61 5.61 Total: -1.00 -32.44 372.03 -9.41 -41.85 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -8.75 Total: 5.90 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 0.15 Total: -30.11 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.30 Total: -45.66 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -1.77 Total: -38.81 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -3.87 Total: 17.72 kcal Atomic # 16 Polarization: 43.97 SS G_CDS: -0.48 Total: 43.50 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.44 -9.41 -41.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331347370.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.059 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds